RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 TSPAN1O60635 241 aa16.69■□□□□ 0.26
SDC4-201ENST00000372733 TMCC1O94876 653 aa16.69■□□□□ 0.26
SDC4-201ENST00000372733 MPOP05164 745 aa16.69■□□□□ 0.26
SDC4-201ENST00000372733 RPS12P25398 132 aaKnown RBP16.69■□□□□ 0.26
SDC4-201ENST00000372733 GRIA4P48058 902 aa16.69■□□□□ 0.26
SDC4-201ENST00000372733 MPP3Q13368 585 aa16.69■□□□□ 0.26
SDC4-201ENST00000372733 PPP2R5DQ14738 602 aa16.69■□□□□ 0.26
SDC4-201ENST00000372733 GJC2Q5T442 439 aaPredicted RBP16.69■□□□□ 0.26
SDC4-201ENST00000372733 CERCAMQ5T4B2 595 aa16.69■□□□□ 0.26
SDC4-201ENST00000372733 ZFP1Q6P2D0 407 aa16.69■□□□□ 0.26
SDC4-201ENST00000372733 LCA5Q86VQ0 697 aa16.69■□□□□ 0.26
SDC4-201ENST00000372733 RP9Q8TA86 221 aaKnown RBP16.69■□□□□ 0.26
SDC4-201ENST00000372733 C18orf25Q96B23 403 aaPredicted RBP16.69■□□□□ 0.26
SDC4-201ENST00000372733 VPS39Q96JC1 886 aa16.69■□□□□ 0.26
SDC4-201ENST00000372733 IGSF9Q9P2J2 1179 aa16.69■□□□□ 0.26
SDC4-201ENST00000372733 WDR90Q96KV7 1748 aa16.69■□□□□ 0.26
SDC4-201ENST00000372733 hCG_2014768A0A024R1R8 64 aa16.69■□□□□ 0.26
SDC4-201ENST00000372733 PRSS51A0A1B0GVH4 220 aa16.69■□□□□ 0.26
SDC4-201ENST00000372733 PHGDHO43175 533 aaKnown RBP16.69■□□□□ 0.26
SDC4-201ENST00000372733 TRPA1O75762 1119 aa16.69■□□□□ 0.26
SDC4-201ENST00000372733 RPL14P50914 215 aaKnown RBP16.69■□□□□ 0.26
SDC4-201ENST00000372733 BCAT1P54687 386 aa16.69■□□□□ 0.26
SDC4-201ENST00000372733 OLFML2BQ68BL8 750 aa16.69■□□□□ 0.26
SDC4-201ENST00000372733 STRADAQ7RTN6 431 aa16.69■□□□□ 0.26
SDC4-201ENST00000372733 PGAM4Q8N0Y7 254 aa16.69■□□□□ 0.26
SDC4-201ENST00000372733 ADCY4Q8NFM4 1077 aa16.69■□□□□ 0.26
SDC4-201ENST00000372733 ZFRQ96KR1 1074 aaKnown RBP16.69■□□□□ 0.26
SDC4-201ENST00000372733 ZNF385DQ9H6B1 395 aa16.69■□□□□ 0.26
SDC4-201ENST00000372733 PDGFCQ9NRA1 345 aa16.69■□□□□ 0.26
SDC4-201ENST00000372733 IARS2Q9NSE4 1012 aaKnown RBP16.69■□□□□ 0.26
SDC4-201ENST00000372733 ZDHHC2Q9UIJ5 367 aa16.69■□□□□ 0.26
SDC4-201ENST00000372733 NAGLUP54802 743 aa16.68■□□□□ 0.26
SDC4-201ENST00000372733 APOFQ13790 326 aa16.68■□□□□ 0.26
SDC4-201ENST00000372733 ARHGAP17Q68EM7 881 aa16.68■□□□□ 0.26
SDC4-201ENST00000372733 AMIGO2Q86SJ2 522 aa16.68■□□□□ 0.26
SDC4-201ENST00000372733 TMEM135Q86UB9 458 aa16.68■□□□□ 0.26
SDC4-201ENST00000372733 KCNMB4Q86W47 210 aa16.68■□□□□ 0.26
SDC4-201ENST00000372733 CATSPER1Q8NEC5 780 aa16.68■□□□□ 0.26
SDC4-201ENST00000372733 NLRP7Q8WX94 980 aa16.68■□□□□ 0.26
SDC4-201ENST00000372733 TMA16Q96EY4 203 aaKnown RBP16.68■□□□□ 0.26
SDC4-201ENST00000372733 NPAS2Q99743 824 aa16.68■□□□□ 0.26
SDC4-201ENST00000372733 MRPL1Q9BYD6 325 aaKnown RBP16.68■□□□□ 0.26
SDC4-201ENST00000372733 SENP6Q9GZR1 1112 aaPredicted RBP16.68■□□□□ 0.26
SDC4-201ENST00000372733 DRC3Q9H069 523 aa16.68■□□□□ 0.26
SDC4-201ENST00000372733 C20orf96Q9NUD7 363 aaPredicted RBP16.68■□□□□ 0.26
SDC4-201ENST00000372733 H2AFYO75367 372 aaKnown RBP16.68■□□□□ 0.26
SDC4-201ENST00000372733 SBK3P0C264 359 aa16.68■□□□□ 0.26
SDC4-201ENST00000372733 FAM58BPP0C7Q3 252 aa16.68■□□□□ 0.26
SDC4-201ENST00000372733 PTPN1P18031 435 aaKnown RBP16.68■□□□□ 0.26
SDC4-201ENST00000372733 LMO2P25791 158 aa16.68■□□□□ 0.26
SDC4-201ENST00000372733 PCSK6P29122 969 aa16.68■□□□□ 0.26
SDC4-201ENST00000372733 AVPR1AP37288 418 aa16.68■□□□□ 0.26
SDC4-201ENST00000372733 SLC26A2P50443 739 aa16.68■□□□□ 0.26
SDC4-201ENST00000372733 NSUN2Q08J23 767 aaKnown RBP eCLIP16.68■□□□□ 0.26
SDC4-201ENST00000372733 DCAF6Q58WW2 860 aa16.68■□□□□ 0.26
SDC4-201ENST00000372733 ZYG11AQ6WRX3 759 aa16.68■□□□□ 0.26
SDC4-201ENST00000372733 ANKRD52Q8NB46 1076 aa16.68■□□□□ 0.26
SDC4-201ENST00000372733 SLC7A14Q8TBB6 771 aa16.68■□□□□ 0.26
SDC4-201ENST00000372733 FAM124BQ9H5Z6 455 aaPredicted RBP16.68■□□□□ 0.26
SDC4-201ENST00000372733 BFARQ9NZS9 450 aa16.68■□□□□ 0.26
SDC4-201ENST00000372733 RCOR3Q9P2K3 495 aaPredicted RBP16.68■□□□□ 0.26
SDC4-201ENST00000372733 DMTF1Q9Y222 760 aa16.68■□□□□ 0.26
SDC4-201ENST00000372733 MCM3APO60318 1980 aa16.68■□□□□ 0.26
SDC4-201ENST00000372733 TMEM233B4DJY2 109 aa16.67■□□□□ 0.26
SDC4-201ENST00000372733 AP2A1O95782 977 aa16.67■□□□□ 0.26
SDC4-201ENST00000372733 TXNP10599 105 aaKnown RBP16.67■□□□□ 0.26
SDC4-201ENST00000372733 TFEBP19484 476 aa16.67■□□□□ 0.26
SDC4-201ENST00000372733 ME2P23368 584 aa16.67■□□□□ 0.26
SDC4-201ENST00000372733 PTPN3P26045 913 aa16.67■□□□□ 0.26
SDC4-201ENST00000372733 MATKP42679 507 aa16.67■□□□□ 0.26
SDC4-201ENST00000372733 GRM3Q14832 879 aa16.67■□□□□ 0.26
SDC4-201ENST00000372733 SH3D19Q5HYK7 790 aa16.67■□□□□ 0.26
SDC4-201ENST00000372733 LIPMQ5VYY2 423 aa16.67■□□□□ 0.26
SDC4-201ENST00000372733 PTAR1Q7Z6K3 402 aaPredicted RBP16.67■□□□□ 0.26
SDC4-201ENST00000372733 ZSCAN18Q8TBC5 510 aaPredicted RBP16.67■□□□□ 0.26
SDC4-201ENST00000372733 SLC2A14Q8TDB8 520 aa16.67■□□□□ 0.26
SDC4-201ENST00000372733 PDCD6IPQ8WUM4 868 aaKnown RBP16.67■□□□□ 0.26
SDC4-201ENST00000372733 SCYL1Q96KG9 808 aa16.67■□□□□ 0.26
SDC4-201ENST00000372733 GALNT8Q9NY28 637 aa16.67■□□□□ 0.26
SDC4-201ENST00000372733 PLK2Q9NYY3 685 aa16.67■□□□□ 0.26
SDC4-201ENST00000372733 CDYLQ9Y232 598 aa16.67■□□□□ 0.26
SDC4-201ENST00000372733 RNASEH2AO75792 299 aaKnown RBP16.67■□□□□ 0.26
SDC4-201ENST00000372733 BCAS2O75934 225 aaPredicted RBP16.67■□□□□ 0.26
SDC4-201ENST00000372733 VAPBO95292 243 aa16.67■□□□□ 0.26
SDC4-201ENST00000372733 TPH1P17752 444 aa16.67■□□□□ 0.26
SDC4-201ENST00000372733 ADIGQ0VDE8 80 aa16.67■□□□□ 0.26
SDC4-201ENST00000372733 ART3Q13508 389 aa16.67■□□□□ 0.26
SDC4-201ENST00000372733 KIZQ2M2Z5 673 aa16.67■□□□□ 0.26
SDC4-201ENST00000372733 Q3C1V9 767 aa16.67■□□□□ 0.26
SDC4-201ENST00000372733 PSTKQ8IV42 348 aaKnown RBP16.67■□□□□ 0.26
SDC4-201ENST00000372733 KCTD4Q8WVF5 259 aa16.67■□□□□ 0.26
SDC4-201ENST00000372733 CHRAC1Q9NRG0 131 aa16.67■□□□□ 0.26
SDC4-201ENST00000372733 ERAP1Q9NZ08 941 aa16.67■□□□□ 0.26
SDC4-201ENST00000372733 VPS28Q9UK41 221 aa16.67■□□□□ 0.26
SDC4-201ENST00000372733 GJD2Q9UKL4 321 aa16.67■□□□□ 0.26
SDC4-201ENST00000372733 NFKBIEO00221 500 aa16.66■□□□□ 0.26
SDC4-201ENST00000372733 TIMM44O43615 452 aa16.66■□□□□ 0.26
SDC4-201ENST00000372733 CYP2C8P10632 490 aa16.66■□□□□ 0.26
SDC4-201ENST00000372733 HPCAP84074 193 aa16.66■□□□□ 0.26
SDC4-201ENST00000372733 NME3Q13232 169 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms