RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 FAM47DPA6NHR8 397 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 EFCAB8A8MWE9 144 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 APOC4-APOC2K7ER74 178 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 KDELR3O43731 214 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 RNASEH2AO75792 299 aaKnown RBP9.37□□□□□ -0.91
UPF2-202ENST00000357604 APOC2P02655 101 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 ETF1P62495 437 aaKnown RBP9.37□□□□□ -0.91
UPF2-202ENST00000357604 CSTF1Q05048 431 aaKnown RBP9.37□□□□□ -0.91
UPF2-202ENST00000357604 TANGO2Q6ICL3 276 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 TRIM48Q8IWZ4 208 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 CFAP52Q8N1V2 620 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 TBC1D19Q8N5T2 526 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 LPCAT1Q8NF37 534 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 MYO19Q96H55 970 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 MYADMQ96S97 322 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 OSBPL9Q96SU4 736 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 HS3ST4Q9Y661 456 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 ZNF487B1APH4 448 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 TBX18O95935 607 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 AKT1P31749 480 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 ZNF77Q15935 545 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 ZNF662Q6ZS27 426 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 SRLQ86TD4 932 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 GPATCH11Q8N954 259 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 JOSD2Q8TAC2 188 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 GRIN3AQ8TCU5 1115 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 SKA2Q8WVK7 121 aaPredicted RBP9.37□□□□□ -0.91
UPF2-202ENST00000357604 RAB7BQ96AH8 199 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 CYP2S1Q96SQ9 504 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 NPY6RQ99463 290 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 ERI2A8K979 691 aaKnown RBP9.37□□□□□ -0.91
UPF2-202ENST00000357604 SLU7O95391 586 aaKnown RBP9.37□□□□□ -0.91
UPF2-202ENST00000357604 RARAP10276 462 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 HADHBP55084 474 aaKnown RBP9.37□□□□□ -0.91
UPF2-202ENST00000357604 SIGLEC14Q08ET2 396 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 FASTKD1Q53R41 847 aaKnown RBP9.37□□□□□ -0.91
UPF2-202ENST00000357604 LPCAT2Q7L5N7 544 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 GPRIN1Q7Z2K8 1008 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 CCNJLQ8IV13 435 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 IPMKQ8NFU5 416 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 HTR3CQ8WXA8 447 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 BTBD1Q9H0C5 482 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 TAS2R14Q9NYV8 317 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 EFR3BQ9Y2G0 817 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 TBC1D3DA0A087WVF3 549 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 TBC1D3IA0A087WXS9 549 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 TBC1D3EA0A087X179 549 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 TBC1D3KA0A087X1G2 549 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 TBC1D3FA6NER0 549 aaPredicted RBP9.37□□□□□ -0.91
UPF2-202ENST00000357604 PRR23AA6NEV1 266 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 TBC1D3LB9A6J9 549 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 EPHB6O15197 1021 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 ALOX15BO15296 676 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 LCA5LO95447 670 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 DLDP09622 509 aaKnown RBP9.37□□□□□ -0.91
UPF2-202ENST00000357604 TBC1D3HP0C7X1 549 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 FNTAP49354 379 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 KCNQ1P51787 676 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 PTP4A2Q12974 167 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 TBC1D3GQ6DHY5 549 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 TBC1D3CQ6IPX1 549 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 TBC1D3Q8IZP1 549 aaPredicted RBP9.37□□□□□ -0.91
UPF2-202ENST00000357604 AFAP1L2Q8N4X5 818 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 OR2T3Q8NH03 318 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 FIBINQ8TAL6 211 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 CLEC4CQ8WTT0 213 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 RNF157Q96PX1 679 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 TBL1YQ9BQ87 522 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 VN1R3Q9BXE9 311 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 PACSIN1Q9BY11 444 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 CDC23Q9UJX2 597 aa9.37□□□□□ -0.91
UPF2-202ENST00000357604 TMEM221A6NGB7 291 aa9.36□□□□□ -0.91
UPF2-202ENST00000357604 M0R296 226 aa9.36□□□□□ -0.91
UPF2-202ENST00000357604 QSOX1O00391 747 aa9.36□□□□□ -0.91
UPF2-202ENST00000357604 NEK3P51956 506 aa9.36□□□□□ -0.91
UPF2-202ENST00000357604 NRG1Q02297 640 aaPredicted RBP9.36□□□□□ -0.91
UPF2-202ENST00000357604 PCSK7Q16549 785 aa9.36□□□□□ -0.91
UPF2-202ENST00000357604 SKIDA1Q1XH10 827 aa9.36□□□□□ -0.91
UPF2-202ENST00000357604 TTC9BQ8N6N2 239 aa9.36□□□□□ -0.91
UPF2-202ENST00000357604 FOXP3Q9BZS1 431 aa9.36□□□□□ -0.91
UPF2-202ENST00000357604 XAB2Q9HCS7 855 aaKnown RBP9.36□□□□□ -0.91
UPF2-202ENST00000357604 ACP6Q9NPH0 428 aa9.36□□□□□ -0.91
UPF2-202ENST00000357604 CRLS1Q9UJA2 301 aa9.36□□□□□ -0.91
UPF2-202ENST00000357604 ARIH1Q9Y4X5 557 aaPredicted RBP9.36□□□□□ -0.91
UPF2-202ENST00000357604 FPGTO14772 594 aa9.36□□□□□ -0.91
UPF2-202ENST00000357604 BEST1O76090 585 aa9.36□□□□□ -0.91
UPF2-202ENST00000357604 ASGR2P07307 311 aa9.36□□□□□ -0.91
UPF2-202ENST00000357604 FLT3P36888 993 aa9.36□□□□□ -0.91
UPF2-202ENST00000357604 ARL4DP49703 201 aa9.36□□□□□ -0.91
UPF2-202ENST00000357604 ZRSR2Q15696 482 aaKnown RBP9.36□□□□□ -0.91
UPF2-202ENST00000357604 UGT3A1Q6NUS8 523 aa9.36□□□□□ -0.91
UPF2-202ENST00000357604 RAD9BQ6WBX8 426 aa9.36□□□□□ -0.91
UPF2-202ENST00000357604 RNF168Q8IYW5 571 aaPredicted RBP9.36□□□□□ -0.91
UPF2-202ENST00000357604 NUSAP1Q9BXS6 441 aaKnown RBP9.36□□□□□ -0.91
UPF2-202ENST00000357604 TTYH3Q9C0H2 523 aa9.36□□□□□ -0.91
UPF2-202ENST00000357604 ELOVL2Q9NXB9 296 aa9.36□□□□□ -0.91
UPF2-202ENST00000357604 TBX10O75333 385 aa9.36□□□□□ -0.91
UPF2-202ENST00000357604 CYP17A1P05093 508 aa9.36□□□□□ -0.91
UPF2-202ENST00000357604 MLLT6P55198 1093 aaPredicted RBP9.36□□□□□ -0.91
UPF2-202ENST00000357604 PARM1Q6UWI2 310 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms