RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 SIGLEC16A6NMB1 481 aa19.83■□□□□ 0.77
CCDC88B-202ENST00000356786 GPC1P35052 558 aa19.83■□□□□ 0.77
CCDC88B-202ENST00000356786 CAP2P40123 477 aa19.83■□□□□ 0.77
CCDC88B-202ENST00000356786 HALP42357 657 aa19.83■□□□□ 0.77
CCDC88B-202ENST00000356786 TAS2R40P59535 323 aa19.83■□□□□ 0.77
CCDC88B-202ENST00000356786 EML3Q32P44 896 aa19.83■□□□□ 0.77
CCDC88B-202ENST00000356786 TIMM50Q3ZCQ8 353 aa19.83■□□□□ 0.77
CCDC88B-202ENST00000356786 HPS6Q86YV9 775 aa19.83■□□□□ 0.77
CCDC88B-202ENST00000356786 OR56A4Q8NGH8 313 aa19.83■□□□□ 0.77
CCDC88B-202ENST00000356786 BHMTQ93088 406 aa19.83■□□□□ 0.77
CCDC88B-202ENST00000356786 EPB41L1Q9H4G0 881 aa19.83■□□□□ 0.77
CCDC88B-202ENST00000356786 PNPOQ9NVS9 261 aa19.83■□□□□ 0.77
CCDC88B-202ENST00000356786 ITM2BQ9Y287 266 aa19.83■□□□□ 0.77
CCDC88B-202ENST00000356786 DPYSL4O14531 572 aa19.83■□□□□ 0.77
CCDC88B-202ENST00000356786 LTFP02788 710 aa19.83■□□□□ 0.77
CCDC88B-202ENST00000356786 PAEPP09466 180 aa19.83■□□□□ 0.77
CCDC88B-202ENST00000356786 PURAQ00577 322 aaKnown RBP19.83■□□□□ 0.77
CCDC88B-202ENST00000356786 ASZ1Q8WWH4 475 aa19.83■□□□□ 0.77
CCDC88B-202ENST00000356786 EDEM1Q92611 657 aa19.83■□□□□ 0.77
CCDC88B-202ENST00000356786 CPB2Q96IY4 423 aa19.83■□□□□ 0.77
CCDC88B-202ENST00000356786 ELP3Q9H9T3 547 aa19.83■□□□□ 0.77
CCDC88B-202ENST00000356786 TAS2R13Q9NYV9 303 aa19.83■□□□□ 0.77
CCDC88B-202ENST00000356786 RAP2CQ9Y3L5 183 aa19.83■□□□□ 0.77
CCDC88B-202ENST00000356786 SEC22BO75396 215 aa19.83■□□□□ 0.76
CCDC88B-202ENST00000356786 IDH2P48735 452 aaKnown RBP19.83■□□□□ 0.76
CCDC88B-202ENST00000356786 NEPROQ6NW34 567 aa19.83■□□□□ 0.76
CCDC88B-202ENST00000356786 ZNF605Q86T29 641 aa19.83■□□□□ 0.76
CCDC88B-202ENST00000356786 CYP4Z1Q86W10 505 aa19.83■□□□□ 0.76
CCDC88B-202ENST00000356786 NAT14Q8WUY8 206 aa19.83■□□□□ 0.76
CCDC88B-202ENST00000356786 SPATA16Q9BXB7 569 aa19.83■□□□□ 0.76
CCDC88B-202ENST00000356786 hCG_1818297A0A087WSY0 165 aa19.83■□□□□ 0.76
CCDC88B-202ENST00000356786 A0A0A0MRY4 1105 aa19.83■□□□□ 0.76
CCDC88B-202ENST00000356786 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP19.83■□□□□ 0.76
CCDC88B-202ENST00000356786 SPTLC1O15269 473 aa19.83■□□□□ 0.76
CCDC88B-202ENST00000356786 ADRB2P07550 413 aa19.83■□□□□ 0.76
CCDC88B-202ENST00000356786 ZNF177Q13360 481 aaPredicted RBP19.83■□□□□ 0.76
CCDC88B-202ENST00000356786 KLHL23Q8NBE8 558 aa19.83■□□□□ 0.76
CCDC88B-202ENST00000356786 SPATA13Q96N96 652 aa19.83■□□□□ 0.76
CCDC88B-202ENST00000356786 EBNA1BP2Q99848 306 aaKnown RBP19.83■□□□□ 0.76
CCDC88B-202ENST00000356786 TIMMDC1Q9NPL8 285 aa19.83■□□□□ 0.76
CCDC88B-202ENST00000356786 DOLKQ9UPQ8 538 aa19.83■□□□□ 0.76
CCDC88B-202ENST00000356786 INVSQ9Y283 1065 aa19.83■□□□□ 0.76
CCDC88B-202ENST00000356786 FAM220BPB1ANY3 271 aa19.82■□□□□ 0.76
CCDC88B-202ENST00000356786 VPS4BO75351 444 aa19.82■□□□□ 0.76
CCDC88B-202ENST00000356786 DBTP11182 482 aaKnown RBP19.82■□□□□ 0.76
CCDC88B-202ENST00000356786 EPB42P16452 691 aa19.82■□□□□ 0.76
CCDC88B-202ENST00000356786 SHMT1P34896 483 aa19.82■□□□□ 0.76
CCDC88B-202ENST00000356786 TOP3AQ13472 1001 aaPredicted RBP19.82■□□□□ 0.76
CCDC88B-202ENST00000356786 DEFB106AQ8N104 65 aa19.82■□□□□ 0.76
CCDC88B-202ENST00000356786 ADCY4Q8NFM4 1077 aa19.82■□□□□ 0.76
CCDC88B-202ENST00000356786 WDR36Q8NI36 951 aaKnown RBP19.82■□□□□ 0.76
CCDC88B-202ENST00000356786 C3orf18Q9UK00 162 aa19.82■□□□□ 0.76
CCDC88B-202ENST00000356786 MTF2Q9Y483 593 aaPredicted RBP19.82■□□□□ 0.76
CCDC88B-202ENST00000356786 TMEM191CA6NGB0 347 aa19.82■□□□□ 0.76
CCDC88B-202ENST00000356786 DDX3YO15523 660 aaKnown RBP19.82■□□□□ 0.76
CCDC88B-202ENST00000356786 PSMB4P28070 264 aa19.82■□□□□ 0.76
CCDC88B-202ENST00000356786 TNK2Q07912 1038 aa19.82■□□□□ 0.76
CCDC88B-202ENST00000356786 ADIGQ0VDE8 80 aa19.82■□□□□ 0.76
CCDC88B-202ENST00000356786 LAMTOR4Q0VGL1 99 aa19.82■□□□□ 0.76
CCDC88B-202ENST00000356786 MICALL2Q8IY33 904 aa19.82■□□□□ 0.76
CCDC88B-202ENST00000356786 ASB2Q96Q27 587 aa19.82■□□□□ 0.76
CCDC88B-202ENST00000356786 PXMP2Q9NR77 195 aa19.82■□□□□ 0.76
CCDC88B-202ENST00000356786 DHRS12A0PJE2 317 aa19.82■□□□□ 0.76
CCDC88B-202ENST00000356786 CD3EAPO15446 510 aaKnown RBP19.82■□□□□ 0.76
CCDC88B-202ENST00000356786 ENDOD1O94919 500 aa19.82■□□□□ 0.76
CCDC88B-202ENST00000356786 ITGA2BP08514 1039 aa19.82■□□□□ 0.76
CCDC88B-202ENST00000356786 SLC6A3Q01959 620 aa19.82■□□□□ 0.76
CCDC88B-202ENST00000356786 MAD2L1Q13257 205 aaPredicted RBP19.82■□□□□ 0.76
CCDC88B-202ENST00000356786 ACVR2BQ13705 512 aa19.82■□□□□ 0.76
CCDC88B-202ENST00000356786 SCARA3Q6AZY7 606 aa19.82■□□□□ 0.76
CCDC88B-202ENST00000356786 GLB1LQ6UWU2 654 aa19.82■□□□□ 0.76
CCDC88B-202ENST00000356786 CENPIQ92674 756 aaPredicted RBP19.82■□□□□ 0.76
CCDC88B-202ENST00000356786 PRMT6Q96LA8 375 aaPredicted RBP19.82■□□□□ 0.76
CCDC88B-202ENST00000356786 KCNMB3Q9NPA1 279 aa19.82■□□□□ 0.76
CCDC88B-202ENST00000356786 AVILO75366 819 aa19.81■□□□□ 0.76
CCDC88B-202ENST00000356786 ITGALP20701 1170 aa19.81■□□□□ 0.76
CCDC88B-202ENST00000356786 TKTP29401 623 aaKnown RBP19.81■□□□□ 0.76
CCDC88B-202ENST00000356786 GABRB2P47870 512 aa19.81■□□□□ 0.76
CCDC88B-202ENST00000356786 COX10Q12887 443 aa19.81■□□□□ 0.76
CCDC88B-202ENST00000356786 SQLEQ14534 574 aa19.81■□□□□ 0.76
CCDC88B-202ENST00000356786 HOMEZQ8IX15 550 aa19.81■□□□□ 0.76
CCDC88B-202ENST00000356786 ZHX1-C8orf76Q96EF9 292 aa19.81■□□□□ 0.76
CCDC88B-202ENST00000356786 C19orf60Q96EN9 201 aa19.81■□□□□ 0.76
CCDC88B-202ENST00000356786 SH3BP4Q9P0V3 963 aa19.81■□□□□ 0.76
CCDC88B-202ENST00000356786 DSEQ9UL01 958 aa19.81■□□□□ 0.76
CCDC88B-202ENST00000356786 CLCA2Q9UQC9 943 aa19.81■□□□□ 0.76
CCDC88B-202ENST00000356786 RECQL5O94762 991 aaPredicted RBP19.81■□□□□ 0.76
CCDC88B-202ENST00000356786 RPS6KA3P51812 740 aa19.81■□□□□ 0.76
CCDC88B-202ENST00000356786 USP46P62068 366 aa19.81■□□□□ 0.76
CCDC88B-202ENST00000356786 TAB1Q15750 504 aa19.81■□□□□ 0.76
CCDC88B-202ENST00000356786 FBXO47Q5MNV8 452 aa19.81■□□□□ 0.76
CCDC88B-202ENST00000356786 ARHGAP36Q6ZRI8 547 aa19.81■□□□□ 0.76
CCDC88B-202ENST00000356786 ZDHHC17Q8IUH5 632 aa19.81■□□□□ 0.76
CCDC88B-202ENST00000356786 C10orf107Q8IVU9 208 aa19.81■□□□□ 0.76
CCDC88B-202ENST00000356786 ARL10Q8N8L6 244 aa19.81■□□□□ 0.76
CCDC88B-202ENST00000356786 ADAM32Q8TC27 787 aa19.81■□□□□ 0.76
CCDC88B-202ENST00000356786 OMDQ99983 421 aa19.81■□□□□ 0.76
CCDC88B-202ENST00000356786 TMEM109Q9BVC6 243 aa19.81■□□□□ 0.76
CCDC88B-202ENST00000356786 HSD3B7Q9H2F3 369 aa19.81■□□□□ 0.76
CCDC88B-202ENST00000356786 A0A087WZ62 844 aa19.81■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms