RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 SLC4A11Q8NBS3 891 aa15.14■□□□□ 0.01
COL17A1-201ENST00000353479 CATSPER1Q8NEC5 780 aa15.14■□□□□ 0.01
COL17A1-201ENST00000353479 STXBP5LQ9Y2K9 1186 aa15.14■□□□□ 0.01
COL17A1-201ENST00000353479 RAD54BQ9Y620 910 aa15.14■□□□□ 0.01
COL17A1-201ENST00000353479 BANF1O75531 89 aa15.14■□□□□ 0.01
COL17A1-201ENST00000353479 ACRP10323 421 aa15.14■□□□□ 0.01
COL17A1-201ENST00000353479 CDK16Q00536 496 aa15.14■□□□□ 0.01
COL17A1-201ENST00000353479 CNGA3Q16281 694 aa15.14■□□□□ 0.01
COL17A1-201ENST00000353479 TTC7BQ86TV6 843 aa15.14■□□□□ 0.01
COL17A1-201ENST00000353479 TMPRSS4Q9NRS4 437 aa15.14■□□□□ 0.01
COL17A1-201ENST00000353479 GNRH1P01148 92 aa15.14■□□□□ 0.01
COL17A1-201ENST00000353479 PIRTP0C851 137 aa15.14■□□□□ 0.01
COL17A1-201ENST00000353479 SLC1A6P48664 564 aa15.14■□□□□ 0.01
COL17A1-201ENST00000353479 POLE2P56282 527 aa15.14■□□□□ 0.01
COL17A1-201ENST00000353479 SKOR1P84550 965 aa15.14■□□□□ 0.01
COL17A1-201ENST00000353479 NR6A1Q15406 480 aa15.14■□□□□ 0.01
COL17A1-201ENST00000353479 PMF1Q6P1K2 205 aa15.14■□□□□ 0.01
COL17A1-201ENST00000353479 CXorf40AQ8TE69 158 aa15.14■□□□□ 0.01
COL17A1-201ENST00000353479 HPS4Q9NQG7 708 aa15.14■□□□□ 0.01
COL17A1-201ENST00000353479 SLCO1B7G3V0H7 640 aa15.14■□□□□ 0.01
COL17A1-201ENST00000353479 DHX15O43143 795 aaKnown RBP15.14■□□□□ 0.01
COL17A1-201ENST00000353479 RFX3P48380 749 aa15.14■□□□□ 0.01
COL17A1-201ENST00000353479 ACBD5Q5T8D3 534 aaPredicted RBP15.14■□□□□ 0.01
COL17A1-201ENST00000353479 ZNF662Q6ZS27 426 aa15.14■□□□□ 0.01
COL17A1-201ENST00000353479 STRADAQ7RTN6 431 aa15.14■□□□□ 0.01
COL17A1-201ENST00000353479 LRRC49Q8IUZ0 686 aa15.14■□□□□ 0.01
COL17A1-201ENST00000353479 MCOLN3Q8TDD5 553 aa15.14■□□□□ 0.01
COL17A1-201ENST00000353479 PCED1BQ96HM7 432 aa15.14■□□□□ 0.01
COL17A1-201ENST00000353479 NTPCRQ9BSD7 190 aaKnown RBP15.14■□□□□ 0.01
COL17A1-201ENST00000353479 ASB8Q9H765 288 aa15.14■□□□□ 0.01
COL17A1-201ENST00000353479 PLK2Q9NYY3 685 aa15.14■□□□□ 0.01
COL17A1-201ENST00000353479 DNAJC8O75937 253 aaPredicted RBP15.14■□□□□ 0.01
COL17A1-201ENST00000353479 THRAP10827 490 aa15.14■□□□□ 0.01
COL17A1-201ENST00000353479 CCND3P30281 292 aaPredicted RBP15.14■□□□□ 0.01
COL17A1-201ENST00000353479 PLK1P53350 603 aa15.14■□□□□ 0.01
COL17A1-201ENST00000353479 KCTD19Q17RG1 926 aaPredicted RBP15.14■□□□□ 0.01
COL17A1-201ENST00000353479 RASAL3Q86YV0 1011 aa15.14■□□□□ 0.01
COL17A1-201ENST00000353479 ALG3Q92685 438 aa15.14■□□□□ 0.01
COL17A1-201ENST00000353479 CEP19Q96LK0 163 aa15.14■□□□□ 0.01
COL17A1-201ENST00000353479 CCDC3Q9BQI4 270 aa15.14■□□□□ 0.01
COL17A1-201ENST00000353479 GTF2IRD1Q9UHL9 959 aa15.14■□□□□ 0.01
COL17A1-201ENST00000353479 ANKRD6Q9Y2G4 727 aa15.14■□□□□ 0.01
COL17A1-201ENST00000353479 NR5A2O00482 541 aa15.13■□□□□ 0.01
COL17A1-201ENST00000353479 MTA2O94776 668 aa15.13■□□□□ 0.01
COL17A1-201ENST00000353479 PFKPQ01813 784 aa15.13■□□□□ 0.01
COL17A1-201ENST00000353479 GRB14Q14449 540 aa15.13■□□□□ 0.01
COL17A1-201ENST00000353479 ZNF618Q5T7W0 954 aa15.13■□□□□ 0.01
COL17A1-201ENST00000353479 HGSNATQ68CP4 663 aa15.13■□□□□ 0.01
COL17A1-201ENST00000353479 KIAA1324Q6UXG2 1013 aaKnown RBP15.13■□□□□ 0.01
COL17A1-201ENST00000353479 SLC44A2Q8IWA5 706 aaPredicted RBP15.13■□□□□ 0.01
COL17A1-201ENST00000353479 TNIP2Q8NFZ5 429 aa15.13■□□□□ 0.01
COL17A1-201ENST00000353479 C1QTNF7Q9BXJ2 289 aa15.13■□□□□ 0.01
COL17A1-201ENST00000353479 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP15.13■□□□□ 0.01
COL17A1-201ENST00000353479 KCND1Q9NSA2 647 aa15.13■□□□□ 0.01
COL17A1-201ENST00000353479 NEDD8-MDP1E9PL57 170 aa15.13■□□□□ 0.01
COL17A1-201ENST00000353479 TRIM13O60858 407 aa15.13■□□□□ 0.01
COL17A1-201ENST00000353479 PTPN3P26045 913 aa15.13■□□□□ 0.01
COL17A1-201ENST00000353479 MAPK8P45983 427 aa15.13■□□□□ 0.01
COL17A1-201ENST00000353479 NAB1Q13506 487 aa15.13■□□□□ 0.01
COL17A1-201ENST00000353479 FLOT2Q14254 428 aa15.13■□□□□ 0.01
COL17A1-201ENST00000353479 PLEKHA7Q6IQ23 1121 aa15.13■□□□□ 0.01
COL17A1-201ENST00000353479 MARK2Q7KZI7 788 aaKnown RBP15.13■□□□□ 0.01
COL17A1-201ENST00000353479 DAW1Q8N136 415 aa15.13■□□□□ 0.01
COL17A1-201ENST00000353479 ZNF513Q8N8E2 541 aaPredicted RBP15.13■□□□□ 0.01
COL17A1-201ENST00000353479 TEPSINQ96N21 525 aa15.13■□□□□ 0.01
COL17A1-201ENST00000353479 KLHL5Q96PQ7 755 aa15.13■□□□□ 0.01
COL17A1-201ENST00000353479 ACBD6Q9BR61 282 aa15.13■□□□□ 0.01
COL17A1-201ENST00000353479 RMND5AQ9H871 391 aa15.13■□□□□ 0.01
COL17A1-201ENST00000353479 APOBEC3GQ9HC16 384 aaKnown RBP15.13■□□□□ 0.01
COL17A1-201ENST00000353479 HAO1Q9UJM8 370 aa15.13■□□□□ 0.01
COL17A1-201ENST00000353479 DTNAQ9Y4J8 743 aa15.13■□□□□ 0.01
COL17A1-201ENST00000353479 CPSF4O95639 269 aaKnown RBP15.13■□□□□ 0.01
COL17A1-201ENST00000353479 EOMESO95936 686 aa15.13■□□□□ 0.01
COL17A1-201ENST00000353479 IL1BP01584 269 aa15.13■□□□□ 0.01
COL17A1-201ENST00000353479 DET1Q7L5Y6 550 aa15.13■□□□□ 0.01
COL17A1-201ENST00000353479 MTDHQ86UE4 582 aaKnown RBP15.13■□□□□ 0.01
COL17A1-201ENST00000353479 HORMAD1Q86X24 394 aa15.13■□□□□ 0.01
COL17A1-201ENST00000353479 PPP1R10Q96QC0 940 aaKnown RBP15.13■□□□□ 0.01
COL17A1-201ENST00000353479 FBXO6Q9NRD1 293 aaPredicted RBP15.13■□□□□ 0.01
COL17A1-201ENST00000353479 AGO1Q9UL18 857 aaKnown RBP15.13■□□□□ 0.01
COL17A1-201ENST00000353479 ADRA1BP35368 520 aa15.13■□□□□ 0.01
COL17A1-201ENST00000353479 CHI3L1P36222 383 aaPredicted RBP15.13■□□□□ 0.01
COL17A1-201ENST00000353479 OLFML2BQ68BL8 750 aa15.13■□□□□ 0.01
COL17A1-201ENST00000353479 TSEN2Q8NCE0 465 aaKnown RBP15.13■□□□□ 0.01
COL17A1-201ENST00000353479 ZNF556Q9HAH1 456 aa15.13■□□□□ 0.01
COL17A1-201ENST00000353479 MID1IP1Q9NPA3 183 aa15.13■□□□□ 0.01
COL17A1-201ENST00000353479 PCDHA11Q9Y5I1 949 aa15.13■□□□□ 0.01
COL17A1-201ENST00000353479 KDM3BQ7LBC6 1761 aa15.13■□□□□ 0.01
COL17A1-201ENST00000353479 SCN11AQ9UI33 1791 aa15.13■□□□□ 0.01
COL17A1-201ENST00000353479 FSCN2O14926 492 aa15.12■□□□□ 0.01
COL17A1-201ENST00000353479 SERPINE1P05121 402 aa15.12■□□□□ 0.01
COL17A1-201ENST00000353479 HSPA1AP0DMV8 641 aaKnown RBP15.12■□□□□ 0.01
COL17A1-201ENST00000353479 HSPA1BP0DMV9 641 aaKnown RBP15.12■□□□□ 0.01
COL17A1-201ENST00000353479 SLC2A4P14672 509 aa15.12■□□□□ 0.01
COL17A1-201ENST00000353479 AIF1P55008 147 aa15.12■□□□□ 0.01
COL17A1-201ENST00000353479 CNTN1Q12860 1018 aa15.12■□□□□ 0.01
COL17A1-201ENST00000353479 GALNT3Q14435 633 aa15.12■□□□□ 0.01
COL17A1-201ENST00000353479 VARS2Q5ST30 1063 aaKnown RBP15.12■□□□□ 0.01
COL17A1-201ENST00000353479 MON1BQ7L1V2 547 aa15.12■□□□□ 0.01
COL17A1-201ENST00000353479 STK40Q8N2I9 435 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms