RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 TBC1D30Q9Y2I9 924 aa10.34□□□□□ -0.75
USP54-201ENST00000339859 MRPL42Q9Y6G3 142 aaKnown RBP10.34□□□□□ -0.75
USP54-201ENST00000339859 PYGMP11217 842 aa10.34□□□□□ -0.75
USP54-201ENST00000339859 LRPAP1P30533 357 aa10.34□□□□□ -0.75
USP54-201ENST00000339859 YBEYP58557 167 aaPredicted RBP10.34□□□□□ -0.75
USP54-201ENST00000339859 STRA8Q7Z7C7 330 aa10.34□□□□□ -0.75
USP54-201ENST00000339859 KCTD13Q8WZ19 329 aa10.34□□□□□ -0.75
USP54-201ENST00000339859 ACDQ96AP0 544 aa10.34□□□□□ -0.75
USP54-201ENST00000339859 CPXM1Q96SM3 734 aa10.34□□□□□ -0.75
USP54-201ENST00000339859 MPP6Q9NZW5 540 aa10.34□□□□□ -0.75
USP54-201ENST00000339859 SCML2Q9UQR0 700 aa10.34□□□□□ -0.75
USP54-201ENST00000339859 MPOP05164 745 aa10.33□□□□□ -0.76
USP54-201ENST00000339859 CD151P48509 253 aa10.33□□□□□ -0.76
USP54-201ENST00000339859 POM121L1PQ3SYA9 428 aa10.33□□□□□ -0.76
USP54-201ENST00000339859 TRAPPC5Q8IUR0 188 aa10.33□□□□□ -0.76
USP54-201ENST00000339859 SMG8Q8ND04 991 aaKnown RBP10.33□□□□□ -0.76
USP54-201ENST00000339859 BPIFB1Q8TDL5 484 aa10.33□□□□□ -0.76
USP54-201ENST00000339859 MCCC1Q96RQ3 725 aaPredicted RBP10.33□□□□□ -0.76
USP54-201ENST00000339859 EFHD1Q9BUP0 239 aa10.33□□□□□ -0.76
USP54-201ENST00000339859 MAGEH1Q9H213 219 aa10.33□□□□□ -0.76
USP54-201ENST00000339859 APOBEC3GQ9HC16 384 aaKnown RBP10.33□□□□□ -0.76
USP54-201ENST00000339859 MRGBPQ9NV56 204 aa10.33□□□□□ -0.76
USP54-201ENST00000339859 A0A0G2JND7 137 aa10.33□□□□□ -0.76
USP54-201ENST00000339859 KCNK1O00180 336 aa10.33□□□□□ -0.76
USP54-201ENST00000339859 DIAPH2O60879 1101 aa10.33□□□□□ -0.76
USP54-201ENST00000339859 GLRA3O75311 464 aa10.33□□□□□ -0.76
USP54-201ENST00000339859 RBP1P09455 135 aa10.33□□□□□ -0.76
USP54-201ENST00000339859 RBL1P28749 1068 aa10.33□□□□□ -0.76
USP54-201ENST00000339859 NDST2P52849 883 aa10.33□□□□□ -0.76
USP54-201ENST00000339859 PCID2Q5JVF3 399 aa10.33□□□□□ -0.76
USP54-201ENST00000339859 PMF1Q6P1K2 205 aa10.33□□□□□ -0.76
USP54-201ENST00000339859 OTOAQ7RTW8 1153 aa10.33□□□□□ -0.76
USP54-201ENST00000339859 GRASPQ7Z6J2 395 aaPredicted RBP10.33□□□□□ -0.76
USP54-201ENST00000339859 BCAS4Q8TDM0 211 aa10.33□□□□□ -0.76
USP54-201ENST00000339859 IRF7Q92985 503 aa10.33□□□□□ -0.76
USP54-201ENST00000339859 ATP6V1G3Q96LB4 118 aa10.33□□□□□ -0.76
USP54-201ENST00000339859 PSD3Q9NYI0 1048 aa10.33□□□□□ -0.76
USP54-201ENST00000339859 TDRKHQ9Y2W6 561 aaKnown RBP10.33□□□□□ -0.76
USP54-201ENST00000339859 STYXL1Q9Y6J8 313 aa10.33□□□□□ -0.76
USP54-201ENST00000339859 FTH1P02794 183 aa10.33□□□□□ -0.76
USP54-201ENST00000339859 GNSP15586 552 aa10.33□□□□□ -0.76
USP54-201ENST00000339859 ADRA1BP35368 520 aa10.33□□□□□ -0.76
USP54-201ENST00000339859 CAPRIN1Q14444 709 aaKnown RBP10.33□□□□□ -0.76
USP54-201ENST00000339859 TEAD2Q15562 447 aa10.33□□□□□ -0.76
USP54-201ENST00000339859 TAC4Q86UU9 113 aa10.33□□□□□ -0.76
USP54-201ENST00000339859 KCNMB4Q86W47 210 aa10.33□□□□□ -0.76
USP54-201ENST00000339859 ETNK2Q9NVF9 386 aa10.33□□□□□ -0.76
USP54-201ENST00000339859 FGFR1OP2Q9NVK5 253 aa10.33□□□□□ -0.76
USP54-201ENST00000339859 RUVBL2Q9Y230 463 aaKnown RBP10.33□□□□□ -0.76
USP54-201ENST00000339859 A8MX80 341 aa10.33□□□□□ -0.76
USP54-201ENST00000339859 SLC2A4P14672 509 aa10.33□□□□□ -0.76
USP54-201ENST00000339859 ERCC2P18074 760 aa10.33□□□□□ -0.76
USP54-201ENST00000339859 MMP8P22894 467 aa10.33□□□□□ -0.76
USP54-201ENST00000339859 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.33□□□□□ -0.76
USP54-201ENST00000339859 IFNLR1Q8IU57 520 aaPredicted RBP10.33□□□□□ -0.76
USP54-201ENST00000339859 CRYBG2Q8N1P7 616 aa10.33□□□□□ -0.76
USP54-201ENST00000339859 PRPF18Q99633 342 aaKnown RBP10.33□□□□□ -0.76
USP54-201ENST00000339859 SEMA3CQ99985 751 aa10.33□□□□□ -0.76
USP54-201ENST00000339859 IL22Q9GZX6 179 aa10.33□□□□□ -0.76
USP54-201ENST00000339859 KCTD5Q9NXV2 234 aa10.33□□□□□ -0.76
USP54-201ENST00000339859 APPL1Q9UKG1 709 aa10.33□□□□□ -0.76
USP54-201ENST00000339859 OGDHLQ9ULD0 1010 aa10.33□□□□□ -0.76
USP54-201ENST00000339859 PCDHA11Q9Y5I1 949 aa10.33□□□□□ -0.76
USP54-201ENST00000339859 LAMB1P07942 1786 aa10.33□□□□□ -0.76
USP54-201ENST00000339859 IGKV6-21A0A0C4DH24 114 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 MAPK1P28482 360 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 GGCXP38435 758 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 WDR5P61964 334 aaKnown RBP10.32□□□□□ -0.76
USP54-201ENST00000339859 SKP1P63208 163 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 GABPB1Q06547 395 aaPredicted RBP10.32□□□□□ -0.76
USP54-201ENST00000339859 PLEKHG4Q58EX7 1191 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 CHRDL2Q6WN34 429 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 MON1BQ7L1V2 547 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 MRPL10Q7Z7H8 261 aaKnown RBP10.32□□□□□ -0.76
USP54-201ENST00000339859 ZNF655Q8N720 491 aaPredicted RBP10.32□□□□□ -0.76
USP54-201ENST00000339859 FNIP1Q8TF40 1166 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 CXorf40BQ96DE9 158 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 FAM84AQ96KN4 292 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 NDE1Q9NXR1 346 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 RREB1Q92766 1687 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 MTMR11A4FU01 709 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 DNALI1O14645 258 aaPredicted RBP10.32□□□□□ -0.76
USP54-201ENST00000339859 CHADO15335 359 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 RNASEH2AO75792 299 aaKnown RBP10.32□□□□□ -0.76
USP54-201ENST00000339859 TPH1P17752 444 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 MGAT1P26572 445 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 JAM2P57087 298 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 MROH9Q5TGP6 573 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 CLEC20AQ6ZU45 233 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 CPNE1Q99829 537 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 SLC39A8Q9C0K1 460 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 ZNHIT2Q9UHR6 403 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 VPS51Q9UID3 782 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 WDR27A2RRH5 827 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 MBLAC1A4D2B0 266 aaPredicted RBP10.32□□□□□ -0.76
USP54-201ENST00000339859 RNF19BQ6ZMZ0 732 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 PDCD7Q8N8D1 485 aaKnown RBP10.32□□□□□ -0.76
USP54-201ENST00000339859 CASKIN2Q8WXE0 1202 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 WBP1LQ9NX94 342 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 PPARGC1AQ9UBK2 798 aaKnown RBP10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms