RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 CNTD1Q8N815 330 aa16.96■□□□□ 0.31
VPS54-201ENST00000272322 FAXDC2Q96IV6 333 aa16.96■□□□□ 0.31
VPS54-201ENST00000272322 GORASP1Q9BQQ3 440 aa16.96■□□□□ 0.31
VPS54-201ENST00000272322 LRRC40Q9H9A6 602 aa16.96■□□□□ 0.31
VPS54-201ENST00000272322 DPPA5A6NC42 116 aa16.96■□□□□ 0.31
VPS54-201ENST00000272322 ETFBP38117 255 aa16.96■□□□□ 0.31
VPS54-201ENST00000272322 IDH3AP50213 366 aa16.96■□□□□ 0.31
VPS54-201ENST00000272322 CRYBB1P53674 252 aaPredicted RBP16.96■□□□□ 0.31
VPS54-201ENST00000272322 DPYSQ14117 519 aa16.96■□□□□ 0.31
VPS54-201ENST00000272322 PDPK2PQ6A1A2 396 aa16.96■□□□□ 0.31
VPS54-201ENST00000272322 URGCPQ8TCY9 931 aa16.96■□□□□ 0.31
VPS54-201ENST00000272322 VPS39Q96JC1 886 aa16.96■□□□□ 0.31
VPS54-201ENST00000272322 KLHL5Q96PQ7 755 aa16.96■□□□□ 0.31
VPS54-201ENST00000272322 GEMIN8Q9NWZ8 242 aaKnown RBP16.96■□□□□ 0.31
VPS54-201ENST00000272322 TLK1Q9UKI8 766 aa16.96■□□□□ 0.31
VPS54-201ENST00000272322 MTF2Q9Y483 593 aaPredicted RBP16.96■□□□□ 0.31
VPS54-201ENST00000272322 MBLAC1A4D2B0 266 aaPredicted RBP16.95■□□□□ 0.3
VPS54-201ENST00000272322 PRKCGP05129 697 aa16.95■□□□□ 0.3
VPS54-201ENST00000272322 USP13Q92995 863 aaPredicted RBP16.95■□□□□ 0.3
VPS54-201ENST00000272322 PABPC5Q96DU9 382 aaKnown RBP16.95■□□□□ 0.3
VPS54-201ENST00000272322 FICDQ9BVA6 458 aa16.95■□□□□ 0.3
VPS54-201ENST00000272322 ARHGAP39Q9C0H5 1083 aa16.95■□□□□ 0.3
VPS54-201ENST00000272322 PCDH10Q9P2E7 1040 aa16.95■□□□□ 0.3
VPS54-201ENST00000272322 RUVBL2Q9Y230 463 aaKnown RBP16.95■□□□□ 0.3
VPS54-201ENST00000272322 NOD1Q9Y239 953 aa16.95■□□□□ 0.3
VPS54-201ENST00000272322 TXNDC9O14530 226 aa16.95■□□□□ 0.3
VPS54-201ENST00000272322 SCAMP3O14828 347 aaKnown RBP16.95■□□□□ 0.3
VPS54-201ENST00000272322 MAP3K13O43283 966 aa16.95■□□□□ 0.3
VPS54-201ENST00000272322 TBX18O95935 607 aa16.95■□□□□ 0.3
VPS54-201ENST00000272322 SERPINE1P05121 402 aa16.95■□□□□ 0.3
VPS54-201ENST00000272322 CCNFP41002 786 aa16.95■□□□□ 0.3
VPS54-201ENST00000272322 LPCAT4Q643R3 524 aa16.95■□□□□ 0.3
VPS54-201ENST00000272322 AGMOQ6ZNB7 445 aa16.95■□□□□ 0.3
VPS54-201ENST00000272322 MIB1Q86YT6 1006 aa16.95■□□□□ 0.3
VPS54-201ENST00000272322 ZNF419Q96HQ0 510 aaPredicted RBP16.95■□□□□ 0.3
VPS54-201ENST00000272322 SORT1Q99523 831 aa16.95■□□□□ 0.3
VPS54-201ENST00000272322 EPAS1Q99814 870 aa16.95■□□□□ 0.3
VPS54-201ENST00000272322 BRD8Q9H0E9 1235 aa16.95■□□□□ 0.3
VPS54-201ENST00000272322 FBXW11Q9UKB1 542 aa16.95■□□□□ 0.3
VPS54-201ENST00000272322 TRAFD1O14545 582 aaPredicted RBP16.95■□□□□ 0.3
VPS54-201ENST00000272322 SNNO75324 88 aaPredicted RBP16.95■□□□□ 0.3
VPS54-201ENST00000272322 JUNP05412 331 aaKnown RBP16.95■□□□□ 0.3
VPS54-201ENST00000272322 SPRP35270 261 aaPredicted RBP16.95■□□□□ 0.3
VPS54-201ENST00000272322 GPR15P49685 360 aa16.95■□□□□ 0.3
VPS54-201ENST00000272322 ABCE1P61221 599 aaKnown RBP16.95■□□□□ 0.3
VPS54-201ENST00000272322 DDR2Q16832 855 aa16.95■□□□□ 0.3
VPS54-201ENST00000272322 FBXO48Q5FWF7 155 aa16.95■□□□□ 0.3
VPS54-201ENST00000272322 C6orf163Q5TEZ5 329 aa16.95■□□□□ 0.3
VPS54-201ENST00000272322 PPFIBP2Q8ND30 876 aa16.95■□□□□ 0.3
VPS54-201ENST00000272322 YY1AP1Q9H869 796 aa16.95■□□□□ 0.3
VPS54-201ENST00000272322 DCDC2Q9UHG0 476 aa16.95■□□□□ 0.3
VPS54-201ENST00000272322 ANKRD12Q6UB98 2062 aa16.94■□□□□ 0.3
VPS54-201ENST00000272322 CAPN14A8MX76 684 aa16.94■□□□□ 0.3
VPS54-201ENST00000272322 PIRTP0C851 137 aa16.94■□□□□ 0.3
VPS54-201ENST00000272322 HNRNPLP14866 589 aaKnown RBP eCLIP16.94■□□□□ 0.35e-9■■■□□ 16.9
VPS54-201ENST00000272322 KCNE1P15382 129 aa16.94■□□□□ 0.3
VPS54-201ENST00000272322 GARSP41250 739 aaKnown RBP16.94■□□□□ 0.3
VPS54-201ENST00000272322 MAGEA6P43360 314 aa16.94■□□□□ 0.3
VPS54-201ENST00000272322 SLC34A1Q06495 639 aa16.94■□□□□ 0.3
VPS54-201ENST00000272322 MARK2Q7KZI7 788 aaKnown RBP16.94■□□□□ 0.3
VPS54-201ENST00000272322 RYBPQ8N488 228 aaPredicted RBP16.94■□□□□ 0.3
VPS54-201ENST00000272322 PPP1R10Q96QC0 940 aaKnown RBP16.94■□□□□ 0.3
VPS54-201ENST00000272322 CCDC106Q9BWC9 280 aa16.94■□□□□ 0.3
VPS54-201ENST00000272322 CPT1AP50416 773 aa16.94■□□□□ 0.3
VPS54-201ENST00000272322 IZUMO2Q6UXV1 221 aa16.94■□□□□ 0.3
VPS54-201ENST00000272322 KYAT3Q6YP21 454 aaKnown RBP16.94■□□□□ 0.3
VPS54-201ENST00000272322 FRMD7Q6ZUT3 714 aa16.94■□□□□ 0.3
VPS54-201ENST00000272322 DQX1Q8TE96 717 aaKnown RBP16.94■□□□□ 0.3
VPS54-201ENST00000272322 GATA5Q9BWX5 397 aaPredicted RBP16.94■□□□□ 0.3
VPS54-201ENST00000272322 NMRAL1Q9HBL8 299 aa16.94■□□□□ 0.3
VPS54-201ENST00000272322 ZCWPW2A0A1B0GU75 182 aa16.94■□□□□ 0.3
VPS54-201ENST00000272322 ZBTB14O43829 449 aa16.94■□□□□ 0.3
VPS54-201ENST00000272322 MGEA5O60502 916 aa16.94■□□□□ 0.3
VPS54-201ENST00000272322 AP2A1O95782 977 aa16.94■□□□□ 0.3
VPS54-201ENST00000272322 CHRNA1P02708 482 aa16.94■□□□□ 0.3
VPS54-201ENST00000272322 MX2P20592 715 aa16.94■□□□□ 0.3
VPS54-201ENST00000272322 SOX11P35716 441 aa16.94■□□□□ 0.3
VPS54-201ENST00000272322 VHLP40337 213 aa16.94■□□□□ 0.3
VPS54-201ENST00000272322 PKNOX1P55347 436 aa16.94■□□□□ 0.3
VPS54-201ENST00000272322 LMNTD2Q8IXW0 634 aa16.94■□□□□ 0.3
VPS54-201ENST00000272322 TOP6BLQ8N6T0 577 aa16.94■□□□□ 0.3
VPS54-201ENST00000272322 OR10T2Q8NGX3 314 aa16.94■□□□□ 0.3
VPS54-201ENST00000272322 GJB3O75712 270 aa16.93■□□□□ 0.3
VPS54-201ENST00000272322 WARSP23381 471 aaKnown RBP16.93■□□□□ 0.3
VPS54-201ENST00000272322 GLUD2P49448 558 aa16.93■□□□□ 0.3
VPS54-201ENST00000272322 PURAQ00577 322 aaKnown RBP16.93■□□□□ 0.3
VPS54-201ENST00000272322 PDZD4Q76G19 769 aaPredicted RBP16.93■□□□□ 0.3
VPS54-201ENST00000272322 PTAR1Q7Z6K3 402 aaPredicted RBP16.93■□□□□ 0.3
VPS54-201ENST00000272322 CIR1Q86X95 450 aaPredicted RBP16.93■□□□□ 0.3
VPS54-201ENST00000272322 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP16.93■□□□□ 0.3
VPS54-201ENST00000272322 TDRD5Q8NAT2 981 aaKnown RBP16.93■□□□□ 0.3
VPS54-201ENST00000272322 FAM156AQ8NDB6 213 aa16.93■□□□□ 0.3
VPS54-201ENST00000272322 CATSPER2Q96P56 530 aa16.93■□□□□ 0.3
VPS54-201ENST00000272322 RBBP8Q99708 897 aa16.93■□□□□ 0.3
VPS54-201ENST00000272322 ADAM2Q99965 735 aa16.93■□□□□ 0.3
VPS54-201ENST00000272322 HACD1B0YJ81 288 aa16.93■□□□□ 0.3
VPS54-201ENST00000272322 COPAP53621 1224 aa16.93■□□□□ 0.3
VPS54-201ENST00000272322 RNF220Q5VTB9 566 aa16.93■□□□□ 0.3
VPS54-201ENST00000272322 ZSCAN18Q8TBC5 510 aaPredicted RBP16.93■□□□□ 0.3
VPS54-201ENST00000272322 SH3TC2Q8TF17 1288 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms