RNA–Protein interactions for RNA: ENST00000269318.9

CCDC40-201, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2 BASIC

Gene CCDC40, Length 1,970 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-201ENST00000269318 ACBD5Q5T8D3 534 aaPredicted RBP16.96■□□□□ 0.31
CCDC40-201ENST00000269318 SNX30Q5VWJ9 437 aa16.96■□□□□ 0.31
CCDC40-201ENST00000269318 RAP1GAP2Q684P5 730 aa16.96■□□□□ 0.31
CCDC40-201ENST00000269318 NAPEPLDQ6IQ20 393 aa16.96■□□□□ 0.31
CCDC40-201ENST00000269318 CES3Q6UWW8 571 aa16.96■□□□□ 0.31
CCDC40-201ENST00000269318 TIFABQ6ZNK6 161 aa16.96■□□□□ 0.31
CCDC40-201ENST00000269318 CDHR3Q6ZTQ4 885 aa16.96■□□□□ 0.31
CCDC40-201ENST00000269318 TFAP2DQ7Z6R9 452 aa16.96■□□□□ 0.31
CCDC40-201ENST00000269318 SPATA22Q8NHS9 363 aa16.96■□□□□ 0.31
CCDC40-201ENST00000269318 CDKL2Q92772 493 aa16.96■□□□□ 0.31
CCDC40-201ENST00000269318 FATE1Q969F0 183 aa16.96■□□□□ 0.31
CCDC40-201ENST00000269318 APOL2Q9BQE5 337 aa16.96■□□□□ 0.31
CCDC40-201ENST00000269318 VPS11Q9H270 941 aa16.96■□□□□ 0.31
CCDC40-201ENST00000269318 AFF4Q9UHB7 1163 aaKnown RBP16.96■□□□□ 0.31
CCDC40-201ENST00000269318 IPO11Q9UI26 975 aaKnown RBP16.96■□□□□ 0.31
CCDC40-201ENST00000269318 MAGED2Q9UNF1 606 aaPredicted RBP16.96■□□□□ 0.31
CCDC40-201ENST00000269318 AAR2Q9Y312 384 aaKnown RBP16.96■□□□□ 0.31
CCDC40-201ENST00000269318 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.95■□□□□ 0.3
CCDC40-201ENST00000269318 ZCWPW2A0A1B0GU75 182 aa16.95■□□□□ 0.3
CCDC40-201ENST00000269318 ABLIM3O94929 683 aa16.95■□□□□ 0.3
CCDC40-201ENST00000269318 SEC24AO95486 1093 aa16.95■□□□□ 0.3
CCDC40-201ENST00000269318 SOD2P04179 222 aa16.95■□□□□ 0.3
CCDC40-201ENST00000269318 HMBSP08397 361 aa16.95■□□□□ 0.3
CCDC40-201ENST00000269318 PACS1Q6VY07 963 aa16.95■□□□□ 0.3
CCDC40-201ENST00000269318 SPATA21Q7Z572 469 aa16.95■□□□□ 0.3
CCDC40-201ENST00000269318 SLC39A11Q8N1S5 342 aa16.95■□□□□ 0.3
CCDC40-201ENST00000269318 OTUD6BQ8N6M0 293 aa16.95■□□□□ 0.3
CCDC40-201ENST00000269318 CCT6BQ92526 530 aa16.95■□□□□ 0.3
CCDC40-201ENST00000269318 CERS2Q96G23 380 aa16.95■□□□□ 0.3
CCDC40-201ENST00000269318 PITPNM3Q9BZ71 974 aa16.95■□□□□ 0.3
CCDC40-201ENST00000269318 IL22Q9GZX6 179 aa16.95■□□□□ 0.3
CCDC40-201ENST00000269318 HSFX1Q9UBD0 423 aa16.95■□□□□ 0.3
CCDC40-201ENST00000269318 PRKAG3Q9UGI9 489 aa16.95■□□□□ 0.3
CCDC40-201ENST00000269318 PSAT1Q9Y617 370 aa16.95■□□□□ 0.3
CCDC40-201ENST00000269318 FAM237BA0A1B0GVD1 139 aa16.95■□□□□ 0.3
CCDC40-201ENST00000269318 ABHD14A-ACY1A0A1B0GW23 586 aa16.95■□□□□ 0.3
CCDC40-201ENST00000269318 MAGEB16A2A368 324 aa16.95■□□□□ 0.3
CCDC40-201ENST00000269318 AP3B1O00203 1094 aa16.95■□□□□ 0.3
CCDC40-201ENST00000269318 C2CD2LO14523 706 aa16.95■□□□□ 0.3
CCDC40-201ENST00000269318 ANXA9O76027 345 aa16.95■□□□□ 0.3
CCDC40-201ENST00000269318 MT-CYBP00156 380 aaPredicted RBP16.95■□□□□ 0.3
CCDC40-201ENST00000269318 KPNA1P52294 538 aaPredicted RBP16.95■□□□□ 0.3
CCDC40-201ENST00000269318 DSG1Q02413 1049 aa16.95■□□□□ 0.3
CCDC40-201ENST00000269318 CDH17Q12864 832 aa16.95■□□□□ 0.3
CCDC40-201ENST00000269318 SEPT7Q16181 437 aaKnown RBP16.95■□□□□ 0.3
CCDC40-201ENST00000269318 MROH9Q5TGP6 573 aa16.95■□□□□ 0.3
CCDC40-201ENST00000269318 NADSYN1Q6IA69 706 aa16.95■□□□□ 0.3
CCDC40-201ENST00000269318 KIAA1841Q6NSI8 718 aa16.95■□□□□ 0.3
CCDC40-201ENST00000269318 FAM47EQ6ZV65 393 aa16.95■□□□□ 0.3
CCDC40-201ENST00000269318 TMCO2Q7Z6W1 182 aaPredicted RBP16.95■□□□□ 0.3
CCDC40-201ENST00000269318 LINC00523Q86TU6 105 aa16.95■□□□□ 0.3
CCDC40-201ENST00000269318 ZNF461Q8TAF7 563 aa16.95■□□□□ 0.3
CCDC40-201ENST00000269318 LRRC8CQ8TDW0 803 aa16.95■□□□□ 0.3
CCDC40-201ENST00000269318 OVCA2Q8WZ82 227 aa16.95■□□□□ 0.3
CCDC40-201ENST00000269318 ZNF75CPQ92670 426 aaPredicted RBP16.95■□□□□ 0.3
CCDC40-201ENST00000269318 GRAMD1AQ96CP6 724 aa16.95■□□□□ 0.3
CCDC40-201ENST00000269318 HMCESQ96FZ2 354 aa16.95■□□□□ 0.3
CCDC40-201ENST00000269318 SRPK1Q96SB4 655 aaKnown RBP16.95■□□□□ 0.3
CCDC40-201ENST00000269318 SLCO1B3Q9NPD5 702 aa16.95■□□□□ 0.3
CCDC40-201ENST00000269318 RBM22Q9NW64 420 aaKnown RBP eCLIP16.95■□□□□ 0.3
CCDC40-201ENST00000269318 WBP1LQ9NX94 342 aa16.95■□□□□ 0.3
CCDC40-201ENST00000269318 DONSONQ9NYP3 566 aa16.95■□□□□ 0.3
CCDC40-201ENST00000269318 HBS1LQ9Y450 684 aaKnown RBP16.95■□□□□ 0.3
CCDC40-201ENST00000269318 CCT8L1PA6NM43 557 aa16.94■□□□□ 0.3
CCDC40-201ENST00000269318 COPEO14579 308 aa16.94■□□□□ 0.3
CCDC40-201ENST00000269318 ERVK-10P10266 1014 aa16.94■□□□□ 0.3
CCDC40-201ENST00000269318 HMGA1P17096 107 aaKnown RBP16.94■□□□□ 0.3
CCDC40-201ENST00000269318 DNAJB2P25686 324 aa16.94■□□□□ 0.3
CCDC40-201ENST00000269318 ITGB8P26012 769 aa16.94■□□□□ 0.3
CCDC40-201ENST00000269318 DEFB103AP81534 67 aa16.94■□□□□ 0.3
CCDC40-201ENST00000269318 ANO4Q32M45 955 aa16.94■□□□□ 0.3
CCDC40-201ENST00000269318 ANKRD20A4Q4UJ75 823 aa16.94■□□□□ 0.3
CCDC40-201ENST00000269318 CHSY1Q86X52 802 aa16.94■□□□□ 0.3
CCDC40-201ENST00000269318 SERBP1Q8NC51 408 aaKnown RBP eCLIP16.94■□□□□ 0.3
CCDC40-201ENST00000269318 ZNF669Q96BR6 464 aaPredicted RBP16.94■□□□□ 0.3
CCDC40-201ENST00000269318 MYEOVQ96EZ4 313 aa16.94■□□□□ 0.3
CCDC40-201ENST00000269318 FAM111AQ96PZ2 611 aa16.94■□□□□ 0.3
CCDC40-201ENST00000269318 CDK5RAP1Q96SZ6 601 aaKnown RBP16.94■□□□□ 0.3
CCDC40-201ENST00000269318 IL1RAPL1Q9NZN1 696 aa16.94■□□□□ 0.3
CCDC40-201ENST00000269318 SOX13Q9UN79 622 aa16.94■□□□□ 0.3
CCDC40-201ENST00000269318 STARD13Q9Y3M8 1113 aa16.94■□□□□ 0.3
CCDC40-201ENST00000269318 ATP9BO43861 1147 aa16.93■□□□□ 0.3
CCDC40-201ENST00000269318 EDF1O60869 148 aaKnown RBP16.93■□□□□ 0.3
CCDC40-201ENST00000269318 ADRA1AP35348 466 aa16.93■□□□□ 0.3
CCDC40-201ENST00000269318 KCNQ1P51787 676 aa16.93■□□□□ 0.3
CCDC40-201ENST00000269318 MTA1Q13330 715 aa16.93■□□□□ 0.3
CCDC40-201ENST00000269318 SPRED3Q2MJR0 410 aa16.93■□□□□ 0.3
CCDC40-201ENST00000269318 RNF187Q5TA31 235 aaPredicted RBP16.93■□□□□ 0.3
CCDC40-201ENST00000269318 DENND5AQ6IQ26 1287 aa16.93■□□□□ 0.3
CCDC40-201ENST00000269318 CCDC121Q6ZUS5 278 aa16.93■□□□□ 0.3
CCDC40-201ENST00000269318 RASSF3Q86WH2 238 aa16.93■□□□□ 0.3
CCDC40-201ENST00000269318 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP16.93■□□□□ 0.3
CCDC40-201ENST00000269318 PDZD8Q8NEN9 1154 aa16.93■□□□□ 0.3
CCDC40-201ENST00000269318 MFSD3Q96ES6 412 aa16.93■□□□□ 0.3
CCDC40-201ENST00000269318 ZNF558Q96NG5 402 aa16.93■□□□□ 0.3
CCDC40-201ENST00000269318 PPP1R2P1Q96PQ5 205 aa16.93■□□□□ 0.3
CCDC40-201ENST00000269318 TBL1YQ9BQ87 522 aa16.93■□□□□ 0.3
CCDC40-201ENST00000269318 HERC2P3Q9BVR0 1158 aa16.93■□□□□ 0.3
CCDC40-201ENST00000269318 ZFATQ9P243 1243 aa16.93■□□□□ 0.3
CCDC40-201ENST00000269318 PHTF1Q9UMS5 762 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms