RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 NUGGCQ68CJ6 796 aa16.84■□□□□ 0.29
USP4-201ENST00000265560 TAX1BP1Q86VP1 789 aa16.84■□□□□ 0.29
USP4-201ENST00000265560 RNF135Q8IUD6 432 aa16.84■□□□□ 0.29
USP4-201ENST00000265560 KREMEN2Q8NCW0 462 aa16.84■□□□□ 0.29
USP4-201ENST00000265560 MYRFLQ96LU7 910 aa16.84■□□□□ 0.29
USP4-201ENST00000265560 IL21Q9HBE4 155 aa16.84■□□□□ 0.29
USP4-201ENST00000265560 PLK2Q9NYY3 685 aa16.84■□□□□ 0.29
USP4-201ENST00000265560 GRM6O15303 877 aa16.84■□□□□ 0.29
USP4-201ENST00000265560 ABHD2P08910 425 aa16.84■□□□□ 0.29
USP4-201ENST00000265560 BMPR1AP36894 532 aa16.84■□□□□ 0.29
USP4-201ENST00000265560 POLD3Q15054 466 aaPredicted RBP16.84■□□□□ 0.29
USP4-201ENST00000265560 FOXR1Q6PIV2 292 aa16.84■□□□□ 0.29
USP4-201ENST00000265560 CEP128Q6ZU80 1094 aa16.84■□□□□ 0.29
USP4-201ENST00000265560 IGSF9Q9P2J2 1179 aa16.84■□□□□ 0.29
USP4-201ENST00000265560 AGO1Q9UL18 857 aaKnown RBP16.84■□□□□ 0.29
USP4-201ENST00000265560 LINC01553A4QN01 128 aa16.83■□□□□ 0.29
USP4-201ENST00000265560 LRG1P02750 347 aa16.83■□□□□ 0.29
USP4-201ENST00000265560 CKMP06732 381 aa16.83■□□□□ 0.29
USP4-201ENST00000265560 IVLP07476 585 aa16.83■□□□□ 0.29
USP4-201ENST00000265560 BRAFP15056 766 aa16.83■□□□□ 0.29
USP4-201ENST00000265560 PHBP35232 272 aa16.83■□□□□ 0.29
USP4-201ENST00000265560 MAGEA6P43360 314 aa16.83■□□□□ 0.29
USP4-201ENST00000265560 CHRNA4P43681 627 aa16.83■□□□□ 0.29
USP4-201ENST00000265560 MCUQ8NE86 351 aa16.83■□□□□ 0.29
USP4-201ENST00000265560 PRICKLE1Q96MT3 831 aaPredicted RBP16.83■□□□□ 0.29
USP4-201ENST00000265560 EBNA1BP2Q99848 306 aaKnown RBP16.83■□□□□ 0.29
USP4-201ENST00000265560 GBA3Q9H227 469 aa16.83■□□□□ 0.29
USP4-201ENST00000265560 PRDM16Q9HAZ2 1276 aa16.83■□□□□ 0.29
USP4-201ENST00000265560 TMEM120BA0PK00 339 aa16.83■□□□□ 0.28
USP4-201ENST00000265560 OAS1P00973 400 aaKnown RBP16.83■□□□□ 0.28
USP4-201ENST00000265560 F11P03951 625 aa16.83■□□□□ 0.28
USP4-201ENST00000265560 CCNCP24863 283 aa16.83■□□□□ 0.28
USP4-201ENST00000265560 GEMIN4P57678 1058 aaKnown RBP16.83■□□□□ 0.28
USP4-201ENST00000265560 GDAP1Q8TB36 358 aa16.83■□□□□ 0.28
USP4-201ENST00000265560 ARNTL2Q8WYA1 636 aa16.83■□□□□ 0.28
USP4-201ENST00000265560 MAML1Q92585 1016 aa16.83■□□□□ 0.28
USP4-201ENST00000265560 ZNF778Q96MU6 729 aa16.83■□□□□ 0.28
USP4-201ENST00000265560 ACSS3Q9H6R3 686 aa16.83■□□□□ 0.28
USP4-201ENST00000265560 SP110Q9HB58 689 aa16.83■□□□□ 0.28
USP4-201ENST00000265560 TMEM248Q9NWD8 314 aa16.83■□□□□ 0.28
USP4-201ENST00000265560 CPQQ9Y646 472 aa16.83■□□□□ 0.28
USP4-201ENST00000265560 NDC80O14777 642 aa16.83■□□□□ 0.28
USP4-201ENST00000265560 MATN3O15232 486 aa16.83■□□□□ 0.28
USP4-201ENST00000265560 RAMP2O60895 175 aa16.83■□□□□ 0.28
USP4-201ENST00000265560 MSH2P43246 934 aa16.83■□□□□ 0.28
USP4-201ENST00000265560 MAGEA3P43357 314 aa16.83■□□□□ 0.28
USP4-201ENST00000265560 ZNF135P52742 658 aaPredicted RBP16.83■□□□□ 0.28
USP4-201ENST00000265560 COG7P83436 770 aa16.83■□□□□ 0.28
USP4-201ENST00000265560 FAM43BQ6ZT52 329 aaPredicted RBP16.83■□□□□ 0.28
USP4-201ENST00000265560 PDZD8Q8NEN9 1154 aa16.83■□□□□ 0.28
USP4-201ENST00000265560 ATP2A3Q93084 1043 aa16.83■□□□□ 0.28
USP4-201ENST00000265560 STAMBPL1Q96FJ0 436 aa16.83■□□□□ 0.28
USP4-201ENST00000265560 BRD8Q9H0E9 1235 aa16.83■□□□□ 0.28
USP4-201ENST00000265560 EIF3HO15372 352 aaKnown RBP eCLIP16.82■□□□□ 0.283e-7■■■■□ 20.2
USP4-201ENST00000265560 CA3P07451 260 aa16.82■□□□□ 0.28
USP4-201ENST00000265560 LSP1P33241 339 aa16.82■□□□□ 0.28
USP4-201ENST00000265560 CCR2P41597 374 aa16.82■□□□□ 0.28
USP4-201ENST00000265560 SLC11A2P49281 568 aa16.82■□□□□ 0.28
USP4-201ENST00000265560 SKOR1P84550 965 aa16.82■□□□□ 0.28
USP4-201ENST00000265560 RING1Q06587 406 aa16.82■□□□□ 0.28
USP4-201ENST00000265560 BMPR2Q13873 1038 aa16.82■□□□□ 0.28
USP4-201ENST00000265560 IHHQ14623 411 aa16.82■□□□□ 0.28
USP4-201ENST00000265560 PSRC1Q6PGN9 363 aaPredicted RBP16.82■□□□□ 0.28
USP4-201ENST00000265560 LZTR1Q8N653 840 aa16.82■□□□□ 0.28
USP4-201ENST00000265560 SPPL3Q8TCT6 385 aa16.82■□□□□ 0.28
USP4-201ENST00000265560 TCEAL4Q96EI5 215 aa16.82■□□□□ 0.28
USP4-201ENST00000265560 EXOC2Q96KP1 924 aa16.82■□□□□ 0.28
USP4-201ENST00000265560 PAIP2Q9BPZ3 127 aaKnown RBP16.82■□□□□ 0.28
USP4-201ENST00000265560 EURLQ9NYK6 297 aa16.82■□□□□ 0.28
USP4-201ENST00000265560 ZNF212Q9UDV6 495 aa16.82■□□□□ 0.28
USP4-201ENST00000265560 HBS1LQ9Y450 684 aaKnown RBP16.82■□□□□ 0.28
USP4-201ENST00000265560 IGLV3-10A0A075B6K4 115 aa16.82■□□□□ 0.28
USP4-201ENST00000265560 ABCG1P45844 678 aa16.82■□□□□ 0.28
USP4-201ENST00000265560 CAMK1Q14012 370 aa16.82■□□□□ 0.28
USP4-201ENST00000265560 TNFAIP8L3Q5GJ75 292 aa16.82■□□□□ 0.28
USP4-201ENST00000265560 SLC25A41Q8N5S1 370 aa16.82■□□□□ 0.28
USP4-201ENST00000265560 LBHD1Q9BQE6 289 aaPredicted RBP16.82■□□□□ 0.28
USP4-201ENST00000265560 RXFP1Q9HBX9 757 aa16.82■□□□□ 0.28
USP4-201ENST00000265560 XAB2Q9HCS7 855 aaKnown RBP16.82■□□□□ 0.28
USP4-201ENST00000265560 CHRAC1Q9NRG0 131 aa16.82■□□□□ 0.28
USP4-201ENST00000265560 C2orf71A6NGG8 1288 aa16.81■□□□□ 0.28
USP4-201ENST00000265560 SDR42E2A6NKP2 422 aa16.81■□□□□ 0.28
USP4-201ENST00000265560 SMAPO00193 183 aa16.81■□□□□ 0.28
USP4-201ENST00000265560 AP2A1O95782 977 aa16.81■□□□□ 0.28
USP4-201ENST00000265560 ADH1AP07327 375 aa16.81■□□□□ 0.28
USP4-201ENST00000265560 MMP13P45452 471 aa16.81■□□□□ 0.28
USP4-201ENST00000265560 NTHL1P78549 312 aa16.81■□□□□ 0.28
USP4-201ENST00000265560 SARNPP82979 210 aaKnown RBP16.81■□□□□ 0.28
USP4-201ENST00000265560 IL31Q6EBC2 164 aa16.81■□□□□ 0.28
USP4-201ENST00000265560 LRRC8BQ6P9F7 803 aa16.81■□□□□ 0.28
USP4-201ENST00000265560 C4orf22Q6V702 233 aa16.81■□□□□ 0.28
USP4-201ENST00000265560 UMODL1-AS1Q8N2C9 162 aa16.81■□□□□ 0.28
USP4-201ENST00000265560 PNPLA1Q8N8W4 532 aa16.81■□□□□ 0.28
USP4-201ENST00000265560 MFSD3Q96ES6 412 aa16.81■□□□□ 0.28
USP4-201ENST00000265560 FCRL3Q96P31 734 aaPredicted RBP16.81■□□□□ 0.28
USP4-201ENST00000265560 KLF16Q9BXK1 252 aaPredicted RBP16.81■□□□□ 0.28
USP4-201ENST00000265560 COMMD8Q9NX08 183 aa16.81■□□□□ 0.28
USP4-201ENST00000265560 FNIP2Q9P278 1114 aa16.81■□□□□ 0.28
USP4-201ENST00000265560 RAD54BQ9Y620 910 aa16.81■□□□□ 0.28
USP4-201ENST00000265560 PEX11BO96011 259 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms