RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 SNAP91O60641 907 aa10.58□□□□□ -0.72
SCN1A-222ENST00000642141 RTN2O75298 545 aa10.58□□□□□ -0.72
SCN1A-222ENST00000642141 ENDOD1O94919 500 aa10.58□□□□□ -0.72
SCN1A-222ENST00000642141 TBC1D3HP0C7X1 549 aa10.58□□□□□ -0.72
SCN1A-222ENST00000642141 GOT1P17174 413 aa10.58□□□□□ -0.72
SCN1A-222ENST00000642141 CHRNB2P17787 502 aa10.58□□□□□ -0.72
SCN1A-222ENST00000642141 CD27P26842 260 aa10.58□□□□□ -0.72
SCN1A-222ENST00000642141 MAT2AP31153 395 aaKnown RBP10.58□□□□□ -0.72
SCN1A-222ENST00000642141 GABRB2P47870 512 aa10.58□□□□□ -0.72
SCN1A-222ENST00000642141 ATP11AP98196 1134 aa10.58□□□□□ -0.72
SCN1A-222ENST00000642141 SYCP1Q15431 976 aa10.58□□□□□ -0.72
SCN1A-222ENST00000642141 TEAD4Q15561 434 aa10.58□□□□□ -0.72
SCN1A-222ENST00000642141 DLG2Q15700 870 aa10.58□□□□□ -0.72
SCN1A-222ENST00000642141 CDO1Q16878 200 aa10.58□□□□□ -0.72
SCN1A-222ENST00000642141 SLC25A52Q3SY17 297 aa10.58□□□□□ -0.72
SCN1A-222ENST00000642141 CCDC157Q569K6 752 aa10.58□□□□□ -0.72
SCN1A-222ENST00000642141 TTC39BQ5VTQ0 682 aaPredicted RBP10.58□□□□□ -0.72
SCN1A-222ENST00000642141 CDKAL1Q5VV42 579 aa10.58□□□□□ -0.72
SCN1A-222ENST00000642141 TBC1D3GQ6DHY5 549 aa10.58□□□□□ -0.72
SCN1A-222ENST00000642141 TBC1D3CQ6IPX1 549 aa10.58□□□□□ -0.72
SCN1A-222ENST00000642141 SASS6Q6UVJ0 657 aa10.58□□□□□ -0.72
SCN1A-222ENST00000642141 CLEC17AQ6ZS10 378 aa10.58□□□□□ -0.72
SCN1A-222ENST00000642141 Q6ZVU0 165 aa10.58□□□□□ -0.72
SCN1A-222ENST00000642141 USP30Q70CQ3 517 aa10.58□□□□□ -0.72
SCN1A-222ENST00000642141 FAM131BQ86XD5 332 aa10.58□□□□□ -0.72
SCN1A-222ENST00000642141 TBC1D3Q8IZP1 549 aaPredicted RBP10.58□□□□□ -0.72
SCN1A-222ENST00000642141 ZNF397Q8NF99 534 aaPredicted RBP10.58□□□□□ -0.72
SCN1A-222ENST00000642141 FRS2Q8WU20 508 aa10.58□□□□□ -0.72
SCN1A-222ENST00000642141 ALG14Q96F25 216 aa10.58□□□□□ -0.72
SCN1A-222ENST00000642141 GBP4Q96PP9 640 aa10.58□□□□□ -0.72
SCN1A-222ENST00000642141 ORAI3Q9BRQ5 295 aa10.58□□□□□ -0.72
SCN1A-222ENST00000642141 PCED1AQ9H1Q7 454 aa10.58□□□□□ -0.72
SCN1A-222ENST00000642141 AASDHPPTQ9NRN7 309 aa10.58□□□□□ -0.72
SCN1A-222ENST00000642141 SLC25A13Q9UJS0 675 aa10.58□□□□□ -0.72
SCN1A-222ENST00000642141 STAP1Q9ULZ2 295 aa10.58□□□□□ -0.72
SCN1A-222ENST00000642141 BTBD3Q9Y2F9 522 aa10.58□□□□□ -0.72
SCN1A-222ENST00000642141 OR51B4Q9Y5P0 310 aa10.58□□□□□ -0.72
SCN1A-222ENST00000642141 ASPMQ8IZT6 3477 aa10.57□□□□□ -0.72
SCN1A-222ENST00000642141 CACNA1EQ15878 2313 aa10.57□□□□□ -0.72
SCN1A-222ENST00000642141 MAP1BP46821 2468 aaKnown RBP10.57□□□□□ -0.72
SCN1A-222ENST00000642141 A0A0D9SEW6 157 aa10.57□□□□□ -0.72
SCN1A-222ENST00000642141 LRRC72A6NJI9 287 aa10.57□□□□□ -0.72
SCN1A-222ENST00000642141 H0Y8X5 98 aa10.57□□□□□ -0.72
SCN1A-222ENST00000642141 CLDN11O75508 207 aa10.57□□□□□ -0.72
SCN1A-222ENST00000642141 CER1O95813 267 aa10.57□□□□□ -0.72
SCN1A-222ENST00000642141 TPM2P07951 284 aa10.57□□□□□ -0.72
SCN1A-222ENST00000642141 RHOCP08134 193 aa10.57□□□□□ -0.72
SCN1A-222ENST00000642141 GLDCP23378 1020 aa10.57□□□□□ -0.72
SCN1A-222ENST00000642141 RRM1P23921 792 aa10.57□□□□□ -0.72
SCN1A-222ENST00000642141 CDH5P33151 784 aaPredicted RBP10.57□□□□□ -0.72
SCN1A-222ENST00000642141 SOX5P35711 763 aa10.57□□□□□ -0.72
SCN1A-222ENST00000642141 PLK1P53350 603 aa10.57□□□□□ -0.72
SCN1A-222ENST00000642141 COPB1P53618 953 aaKnown RBP10.57□□□□□ -0.72
SCN1A-222ENST00000642141 ADPRHP54922 357 aa10.57□□□□□ -0.72
SCN1A-222ENST00000642141 NOMO3P69849 1222 aa10.57□□□□□ -0.72
SCN1A-222ENST00000642141 SULT2A1Q06520 285 aa10.57□□□□□ -0.72
SCN1A-222ENST00000642141 SLC14A1Q13336 389 aa10.57□□□□□ -0.72
SCN1A-222ENST00000642141 SLC12A1Q13621 1099 aa10.57□□□□□ -0.72
SCN1A-222ENST00000642141 ARID5BQ14865 1188 aa10.57□□□□□ -0.72
SCN1A-222ENST00000642141 C15orf59Q2T9L4 293 aaPredicted RBP10.57□□□□□ -0.72
SCN1A-222ENST00000642141 FKBP15Q5T1M5 1219 aa10.57□□□□□ -0.72
SCN1A-222ENST00000642141 UNQ6494/PRO21346Q6UXR6 183 aa10.57□□□□□ -0.72
SCN1A-222ENST00000642141 SLCO6A1Q86UG4 719 aa10.57□□□□□ -0.72
SCN1A-222ENST00000642141 ZDHHC17Q8IUH5 632 aa10.57□□□□□ -0.72
SCN1A-222ENST00000642141 ZNF683Q8IZ20 524 aa10.57□□□□□ -0.72
SCN1A-222ENST00000642141 ATP11CQ8NB49 1132 aa10.57□□□□□ -0.72
SCN1A-222ENST00000642141 KDM1BQ8NB78 822 aa10.57□□□□□ -0.72
SCN1A-222ENST00000642141 OR7D4Q8NG98 312 aa10.57□□□□□ -0.72
SCN1A-222ENST00000642141 OR2T34Q8NGX1 318 aa10.57□□□□□ -0.72
SCN1A-222ENST00000642141 RHBDD1Q8TEB9 315 aa10.57□□□□□ -0.72
SCN1A-222ENST00000642141 NT5C3BQ969T7 300 aa10.57□□□□□ -0.72
SCN1A-222ENST00000642141 PCDHB18PQ96TA0 734 aa10.57□□□□□ -0.72
SCN1A-222ENST00000642141 SPON2Q9BUD6 331 aa10.57□□□□□ -0.72
SCN1A-222ENST00000642141 MAGEB5Q9BZ81 275 aa10.57□□□□□ -0.72
SCN1A-222ENST00000642141 TNKS2Q9H2K2 1166 aa10.57□□□□□ -0.72
SCN1A-222ENST00000642141 METTL5Q9NRN9 209 aaKnown RBP10.57□□□□□ -0.72
SCN1A-222ENST00000642141 SEPT11Q9NVA2 429 aaKnown RBP10.57□□□□□ -0.72
SCN1A-222ENST00000642141 ARHGEF38Q9NXL2 777 aa10.57□□□□□ -0.72
SCN1A-222ENST00000642141 TMEM59LQ9UK28 342 aa10.57□□□□□ -0.72
SCN1A-222ENST00000642141 NOCTQ9UK39 431 aaKnown RBP10.57□□□□□ -0.72
SCN1A-222ENST00000642141 RALYQ9UKM9 306 aaKnown RBP10.57□□□□□ -0.72
SCN1A-222ENST00000642141 SCML1Q9UN30 329 aa10.57□□□□□ -0.72
SCN1A-222ENST00000642141 ITIH6Q6UXX5 1313 aa10.57□□□□□ -0.72
SCN1A-222ENST00000642141 KMT2BQ9UMN6 2715 aaPredicted RBP10.56□□□□□ -0.72
SCN1A-222ENST00000642141 E9PAM4 449 aa10.56□□□□□ -0.72
SCN1A-222ENST00000642141 RNF103O00237 685 aa10.56□□□□□ -0.72
SCN1A-222ENST00000642141 SMAD6O43541 496 aaKnown RBP10.56□□□□□ -0.72
SCN1A-222ENST00000642141 LSM8O95777 96 aaKnown RBP10.56□□□□□ -0.72
SCN1A-222ENST00000642141 ADH1BP00325 375 aa10.56□□□□□ -0.72
SCN1A-222ENST00000642141 F9P00740 461 aa10.56□□□□□ -0.72
SCN1A-222ENST00000642141 PROS1P07225 676 aa10.56□□□□□ -0.72
SCN1A-222ENST00000642141 FTH1P19P0C7X4 201 aa10.56□□□□□ -0.72
SCN1A-222ENST00000642141 CDK11BP21127 795 aaKnown RBP10.56□□□□□ -0.72
SCN1A-222ENST00000642141 C5AR1P21730 350 aa10.56□□□□□ -0.72
SCN1A-222ENST00000642141 OR1E1P30953 314 aa10.56□□□□□ -0.72
SCN1A-222ENST00000642141 DRD3P35462 400 aa10.56□□□□□ -0.72
SCN1A-222ENST00000642141 CDH4P55283 916 aa10.56□□□□□ -0.72
SCN1A-222ENST00000642141 OXCT1P55809 520 aa10.56□□□□□ -0.72
SCN1A-222ENST00000642141 C21orf59P57076 290 aa10.56□□□□□ -0.72
SCN1A-222ENST00000642141 PPP2CBP62714 309 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms