RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 KLHL11Q9NVR0 708 aa16.9■□□□□ 0.3
CLN3-264ENST00000637985 CYTH4Q9UIA0 394 aa16.9■□□□□ 0.3
CLN3-264ENST00000637985 INTS6Q9UL03 887 aaKnown RBP16.9■□□□□ 0.3
CLN3-264ENST00000637985 HBS1LQ9Y450 684 aaKnown RBP16.9■□□□□ 0.3
CLN3-264ENST00000637985 ENTPD2Q9Y5L3 495 aa16.9■□□□□ 0.3
CLN3-264ENST00000637985 PMS2P1A4D2B8 440 aa16.89■□□□□ 0.29
CLN3-264ENST00000637985 CLEC18AA5D8T8 446 aa16.89■□□□□ 0.29
CLN3-264ENST00000637985 ADH1BP00325 375 aa16.89■□□□□ 0.29
CLN3-264ENST00000637985 SFTPCP11686 197 aa16.89■□□□□ 0.29
CLN3-264ENST00000637985 TGM2P21980 687 aa16.89■□□□□ 0.29
CLN3-264ENST00000637985 MAT2AP31153 395 aaKnown RBP16.89■□□□□ 0.29
CLN3-264ENST00000637985 CSKP41240 450 aa16.89■□□□□ 0.29
CLN3-264ENST00000637985 MLLT3P42568 568 aaPredicted RBP16.89■□□□□ 0.29
CLN3-264ENST00000637985 INHBCP55103 352 aa16.89■□□□□ 0.29
CLN3-264ENST00000637985 FKBP3Q00688 224 aaKnown RBP16.89■□□□□ 0.29
CLN3-264ENST00000637985 TLE1Q04724 770 aa16.89■□□□□ 0.29
CLN3-264ENST00000637985 CLEC18BQ6UXF7 455 aa16.89■□□□□ 0.29
CLN3-264ENST00000637985 TTC39CQ8N584 583 aa16.89■□□□□ 0.29
CLN3-264ENST00000637985 CLEC18CQ8NCF0 446 aa16.89■□□□□ 0.29
CLN3-264ENST00000637985 EXTL1Q92935 676 aa16.89■□□□□ 0.29
CLN3-264ENST00000637985 KLHDC7BQ96G42 594 aa16.89■□□□□ 0.29
CLN3-264ENST00000637985 ARHGAP9Q9BRR9 750 aa16.89■□□□□ 0.29
CLN3-264ENST00000637985 IRX2Q9BZI1 471 aaPredicted RBP16.89■□□□□ 0.29
CLN3-264ENST00000637985 KDM4CQ9H3R0 1056 aa16.89■□□□□ 0.29
CLN3-264ENST00000637985 NLGN3Q9NZ94 848 aa16.89■□□□□ 0.29
CLN3-264ENST00000637985 EDDM13A0A1B0GTR0 161 aa16.88■□□□□ 0.29
CLN3-264ENST00000637985 TTC34A8MYJ7 566 aa16.88■□□□□ 0.29
CLN3-264ENST00000637985 PRAMEF26H0Y7S4 382 aa16.88■□□□□ 0.29
CLN3-264ENST00000637985 SLC16A3O15427 465 aaKnown RBP16.88■□□□□ 0.29
CLN3-264ENST00000637985 TBL1XO60907 577 aa16.88■□□□□ 0.29
CLN3-264ENST00000637985 PIAS2O75928 621 aa16.88■□□□□ 0.29
CLN3-264ENST00000637985 FAM87AP0C7U9 286 aa16.88■□□□□ 0.29
CLN3-264ENST00000637985 DRD3P35462 400 aa16.88■□□□□ 0.29
CLN3-264ENST00000637985 MXI1P50539 228 aa16.88■□□□□ 0.29
CLN3-264ENST00000637985 DUSP3P51452 185 aaPredicted RBP16.88■□□□□ 0.29
CLN3-264ENST00000637985 LRRC63Q05C16 580 aa16.88■□□□□ 0.29
CLN3-264ENST00000637985 RAB41Q5JT25 222 aa16.88■□□□□ 0.29
CLN3-264ENST00000637985 PPP1R26Q5T8A7 1209 aaPredicted RBP16.88■□□□□ 0.29
CLN3-264ENST00000637985 PIK3R6Q5UE93 754 aa16.88■□□□□ 0.29
CLN3-264ENST00000637985 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP16.88■□□□□ 0.29
CLN3-264ENST00000637985 TRIM69Q86WT6 500 aa16.88■□□□□ 0.29
CLN3-264ENST00000637985 ARL14Q8N4G2 192 aa16.88■□□□□ 0.29
CLN3-264ENST00000637985 ZNF557Q8N988 423 aaPredicted RBP16.88■□□□□ 0.29
CLN3-264ENST00000637985 FBXL13Q8NEE6 735 aa16.88■□□□□ 0.29
CLN3-264ENST00000637985 FIBINQ8TAL6 211 aa16.88■□□□□ 0.29
CLN3-264ENST00000637985 IFI44Q8TCB0 444 aa16.88■□□□□ 0.29
CLN3-264ENST00000637985 SGF29Q96ES7 293 aa16.88■□□□□ 0.29
CLN3-264ENST00000637985 UBXN6Q9BZV1 441 aa16.88■□□□□ 0.29
CLN3-264ENST00000637985 CAAP1Q9H8G2 361 aa16.88■□□□□ 0.29
CLN3-264ENST00000637985 RAB20Q9NX57 234 aa16.88■□□□□ 0.29
CLN3-264ENST00000637985 ERVW-1Q9UQF0 538 aa16.88■□□□□ 0.29
CLN3-264ENST00000637985 CA5BQ9Y2D0 317 aa16.88■□□□□ 0.29
CLN3-264ENST00000637985 ITIH6Q6UXX5 1313 aa16.88■□□□□ 0.29
CLN3-264ENST00000637985 UTP20O75691 2785 aaKnown RBP16.88■□□□□ 0.29
CLN3-264ENST00000637985 NBASA2RRP1 2371 aa16.87■□□□□ 0.29
CLN3-264ENST00000637985 CREBBPQ92793 2442 aa16.87■□□□□ 0.29
CLN3-264ENST00000637985 NYNRINQ9P2P1 1898 aaKnown RBP16.87■□□□□ 0.29
CLN3-264ENST00000637985 GJB6O95452 261 aa16.87■□□□□ 0.29
CLN3-264ENST00000637985 SRPRAP08240 638 aaKnown RBP16.87■□□□□ 0.29
CLN3-264ENST00000637985 ALPPL2P10696 532 aa16.87■□□□□ 0.29
CLN3-264ENST00000637985 KCNMA1Q12791 1236 aa16.87■□□□□ 0.29
CLN3-264ENST00000637985 C4orf17Q53FE4 359 aa16.87■□□□□ 0.29
CLN3-264ENST00000637985 ANKRD40Q6AI12 368 aa16.87■□□□□ 0.29
CLN3-264ENST00000637985 PM20D1Q6GTS8 502 aa16.87■□□□□ 0.29
CLN3-264ENST00000637985 RFWD3Q6PCD5 774 aa16.87■□□□□ 0.29
CLN3-264ENST00000637985 USP53Q70EK8 1073 aa16.87■□□□□ 0.29
CLN3-264ENST00000637985 BHLHA9Q7RTU4 235 aa16.87■□□□□ 0.29
CLN3-264ENST00000637985 STK40Q8N2I9 435 aa16.87■□□□□ 0.29
CLN3-264ENST00000637985 TMEM145Q8NBT3 493 aa16.87■□□□□ 0.29
CLN3-264ENST00000637985 EEF2KMTQ96G04 330 aa16.87■□□□□ 0.29
CLN3-264ENST00000637985 OLA1Q9NTK5 396 aaKnown RBP16.87■□□□□ 0.29
CLN3-264ENST00000637985 EVA1BQ9NVM1 165 aa16.87■□□□□ 0.29
CLN3-264ENST00000637985 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.87■□□□□ 0.29
CLN3-264ENST00000637985 SFMBT1Q9UHJ3 866 aa16.87■□□□□ 0.29
CLN3-264ENST00000637985 SLC7A4O43246 635 aa16.86■□□□□ 0.29
CLN3-264ENST00000637985 PLRG1O43660 514 aaKnown RBP16.86■□□□□ 0.29
CLN3-264ENST00000637985 RTN2O75298 545 aa16.86■□□□□ 0.29
CLN3-264ENST00000637985 TNFSF15O95150 251 aa16.86■□□□□ 0.29
CLN3-264ENST00000637985 IL1BP01584 269 aa16.86■□□□□ 0.29
CLN3-264ENST00000637985 THEGLP0DJG4 465 aa16.86■□□□□ 0.29
CLN3-264ENST00000637985 CD58P19256 250 aa16.86■□□□□ 0.29
CLN3-264ENST00000637985 MZF1P28698 734 aaPredicted RBP16.86■□□□□ 0.29
CLN3-264ENST00000637985 PPP1R2P41236 205 aa16.86■□□□□ 0.29
CLN3-264ENST00000637985 CTSOP43234 321 aaPredicted RBP16.86■□□□□ 0.29
CLN3-264ENST00000637985 METAP1P53582 386 aa16.86■□□□□ 0.29
CLN3-264ENST00000637985 STIM1Q13586 685 aa16.86■□□□□ 0.29
CLN3-264ENST00000637985 SETMARQ53H47 684 aaPredicted RBP16.86■□□□□ 0.29
CLN3-264ENST00000637985 PIGZQ86VD9 579 aa16.86■□□□□ 0.29
CLN3-264ENST00000637985 MFN1Q8IWA4 741 aa16.86■□□□□ 0.29
CLN3-264ENST00000637985 WDR36Q8NI36 951 aaKnown RBP16.86■□□□□ 0.29
CLN3-264ENST00000637985 SEMA4DQ92854 862 aa16.86■□□□□ 0.29
CLN3-264ENST00000637985 PTPRN2Q92932 1015 aa16.86■□□□□ 0.29
CLN3-264ENST00000637985 PSMG3-AS1Q96PY0 264 aa16.86■□□□□ 0.29
CLN3-264ENST00000637985 SLCO3A1Q9UIG8 710 aa16.86■□□□□ 0.29
CLN3-264ENST00000637985 NEMP2A6NFY4 417 aa16.85■□□□□ 0.29
CLN3-264ENST00000637985 K7ESM1 405 aa16.85■□□□□ 0.29
CLN3-264ENST00000637985 PSMA7O14818 248 aa16.85■□□□□ 0.29
CLN3-264ENST00000637985 SCAMP1O15126 338 aa16.85■□□□□ 0.29
CLN3-264ENST00000637985 IRAK2O43187 625 aa16.85■□□□□ 0.29
CLN3-264ENST00000637985 RNGTTO60942 597 aaKnown RBP16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms