RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 DAPK3O43293 454 aa18.57■□□□□ 0.56
CLN3-239ENST00000628023 RHOQP17081 205 aa18.57■□□□□ 0.56
CLN3-239ENST00000628023 IL1R2P27930 398 aa18.57■□□□□ 0.56
CLN3-239ENST00000628023 WASP42768 502 aa18.57■□□□□ 0.56
CLN3-239ENST00000628023 VAV2P52735 878 aa18.57■□□□□ 0.56
CLN3-239ENST00000628023 SLC25A11Q02978 314 aaKnown RBP18.57■□□□□ 0.56
CLN3-239ENST00000628023 CA9Q16790 459 aa18.57■□□□□ 0.56
CLN3-239ENST00000628023 PLEKHG6Q3KR16 790 aa18.57■□□□□ 0.56
CLN3-239ENST00000628023 FNDC3BQ53EP0 1204 aaKnown RBP18.57■□□□□ 0.56
CLN3-239ENST00000628023 KCNT1Q5JUK3 1230 aa18.57■□□□□ 0.56
CLN3-239ENST00000628023 ZFYVE27Q5T4F4 411 aa18.57■□□□□ 0.56
CLN3-239ENST00000628023 RNF219Q5W0B1 726 aaPredicted RBP18.57■□□□□ 0.56
CLN3-239ENST00000628023 TMEM215Q68D42 235 aa18.57■□□□□ 0.56
CLN3-239ENST00000628023 SYT13Q7L8C5 426 aa18.57■□□□□ 0.56
CLN3-239ENST00000628023 KIAA0907Q7Z7F0 614 aaPredicted RBP18.57■□□□□ 0.56
CLN3-239ENST00000628023 SETD3Q86TU7 594 aaPredicted RBP18.57■□□□□ 0.56
CLN3-239ENST00000628023 ADIPOR2Q86V24 386 aa18.57■□□□□ 0.56
CLN3-239ENST00000628023 KCTD15Q96SI1 283 aaPredicted RBP18.57■□□□□ 0.56
CLN3-239ENST00000628023 CATSPERBQ9H7T0 1116 aa18.57■□□□□ 0.56
CLN3-239ENST00000628023 STAU2Q9NUL3 570 aaKnown RBP eCLIP18.57■□□□□ 0.56
CLN3-239ENST00000628023 CACNA2D2Q9NY47 1150 aa18.57■□□□□ 0.56
CLN3-239ENST00000628023 VPS28Q9UK41 221 aa18.57■□□□□ 0.56
CLN3-239ENST00000628023 PLA2G4CQ9UP65 541 aa18.57■□□□□ 0.56
CLN3-239ENST00000628023 NCOR2Q9Y618 2525 aa18.57■□□□□ 0.56
CLN3-239ENST00000628023 NPC1O15118 1278 aa18.56■□□□□ 0.56
CLN3-239ENST00000628023 AXIN1O15169 862 aa18.56■□□□□ 0.56
CLN3-239ENST00000628023 ASLP04424 464 aa18.56■□□□□ 0.56
CLN3-239ENST00000628023 PTMAP06454 111 aaKnown RBP18.56■□□□□ 0.56
CLN3-239ENST00000628023 DLDP09622 509 aaKnown RBP18.56■□□□□ 0.56
CLN3-239ENST00000628023 HOXB2P14652 356 aa18.56■□□□□ 0.56
CLN3-239ENST00000628023 MZF1P28698 734 aaPredicted RBP18.56■□□□□ 0.56
CLN3-239ENST00000628023 NTSR1P30989 418 aa18.56■□□□□ 0.56
CLN3-239ENST00000628023 HTR7P34969 479 aa18.56■□□□□ 0.56
CLN3-239ENST00000628023 PXNP49023 591 aaPredicted RBP18.56■□□□□ 0.56
CLN3-239ENST00000628023 MAPKAPK2P49137 400 aa18.56■□□□□ 0.56
CLN3-239ENST00000628023 ST8SIA6P61647 398 aa18.56■□□□□ 0.56
CLN3-239ENST00000628023 KRT81Q14533 505 aa18.56■□□□□ 0.56
CLN3-239ENST00000628023 GSE1Q14687 1217 aa18.56■□□□□ 0.56
CLN3-239ENST00000628023 SERPINA13PQ6UXR4 307 aa18.56■□□□□ 0.56
CLN3-239ENST00000628023 CYP4V2Q6ZWL3 525 aaPredicted RBP18.56■□□□□ 0.56
CLN3-239ENST00000628023 APCDD1Q8J025 514 aa18.56■□□□□ 0.56
CLN3-239ENST00000628023 C12orf50Q8NA57 414 aaPredicted RBP18.56■□□□□ 0.56
CLN3-239ENST00000628023 TSTD1Q8NFU3 115 aa18.56■□□□□ 0.56
CLN3-239ENST00000628023 TEKT4Q8WW24 435 aa18.56■□□□□ 0.56
CLN3-239ENST00000628023 LMLNQ96KR4 655 aa18.56■□□□□ 0.56
CLN3-239ENST00000628023 HHIPQ96QV1 700 aa18.56■□□□□ 0.56
CLN3-239ENST00000628023 POLR3BQ9NW08 1133 aaPredicted RBP18.56■□□□□ 0.56
CLN3-239ENST00000628023 TBC1D30Q9Y2I9 924 aa18.56■□□□□ 0.56
CLN3-239ENST00000628023 REXO2Q9Y3B8 237 aaKnown RBP18.56■□□□□ 0.56
CLN3-239ENST00000628023 SDK1Q7Z5N4 2213 aa18.55■□□□□ 0.56
CLN3-239ENST00000628023 SPTBN2O15020 2390 aa18.55■□□□□ 0.56
CLN3-239ENST00000628023 A0A0A6YYK5 440 aaPredicted RBP18.55■□□□□ 0.56
CLN3-239ENST00000628023 H3BRJ5 948 aa18.55■□□□□ 0.56
CLN3-239ENST00000628023 SGK1O00141 431 aa18.55■□□□□ 0.56
CLN3-239ENST00000628023 SLC30A4O14863 429 aa18.55■□□□□ 0.56
CLN3-239ENST00000628023 FGF10O15520 208 aaPredicted RBP18.55■□□□□ 0.56
CLN3-239ENST00000628023 ARHGAP6O43182 974 aa18.55■□□□□ 0.56
CLN3-239ENST00000628023 SPOPO43791 374 aa18.55■□□□□ 0.56
CLN3-239ENST00000628023 KRT7P08729 469 aa18.55■□□□□ 0.56
CLN3-239ENST00000628023 RARAP10276 462 aa18.55■□□□□ 0.56
CLN3-239ENST00000628023 HNRNPLP14866 589 aaKnown RBP eCLIP18.55■□□□□ 0.56
CLN3-239ENST00000628023 ARL4AP40617 200 aa18.55■□□□□ 0.56
CLN3-239ENST00000628023 SULT2A1Q06520 285 aa18.55■□□□□ 0.56
CLN3-239ENST00000628023 SEMA3BQ13214 749 aa18.55■□□□□ 0.56
CLN3-239ENST00000628023 ZNF234Q14588 700 aa18.55■□□□□ 0.56
CLN3-239ENST00000628023 STARD3Q14849 445 aa18.55■□□□□ 0.56
CLN3-239ENST00000628023 TCEAL1Q15170 157 aa18.55■□□□□ 0.56
CLN3-239ENST00000628023 ZNF354CQ86Y25 554 aa18.55■□□□□ 0.56
CLN3-239ENST00000628023 CPNE8Q86YQ8 564 aa18.55■□□□□ 0.56
CLN3-239ENST00000628023 LRRC8AQ8IWT6 810 aa18.55■□□□□ 0.56
CLN3-239ENST00000628023 ACOX2Q99424 681 aa18.55■□□□□ 0.56
CLN3-239ENST00000628023 FEM1AQ9BSK4 669 aa18.55■□□□□ 0.56
CLN3-239ENST00000628023 RETREG1Q9H6L5 497 aa18.55■□□□□ 0.56
CLN3-239ENST00000628023 POLMQ9NP87 494 aaPredicted RBP18.55■□□□□ 0.56
CLN3-239ENST00000628023 TMEM248Q9NWD8 314 aa18.55■□□□□ 0.56
CLN3-239ENST00000628023 DONSONQ9NYP3 566 aa18.55■□□□□ 0.56
CLN3-239ENST00000628023 THAP10Q9P2Z0 257 aaPredicted RBP18.55■□□□□ 0.56
CLN3-239ENST00000628023 DNAI1Q9UI46 699 aa18.55■□□□□ 0.56
CLN3-239ENST00000628023 INTS6Q9UL03 887 aaKnown RBP18.55■□□□□ 0.56
CLN3-239ENST00000628023 NEU3Q9UQ49 428 aa18.55■□□□□ 0.56
CLN3-239ENST00000628023 STON1Q9Y6Q2 735 aa18.55■□□□□ 0.56
CLN3-239ENST00000628023 MYO18AQ92614 2054 aaKnown RBP18.54■□□□□ 0.56
CLN3-239ENST00000628023 SPAG17Q6Q759 2223 aa18.54■□□□□ 0.56
CLN3-239ENST00000628023 ILVBLA1L0T0 632 aa18.54■□□□□ 0.56
CLN3-239ENST00000628023 RCCD1A6NED2 376 aa18.54■□□□□ 0.56
CLN3-239ENST00000628023 ADAM23O75077 832 aa18.54■□□□□ 0.56
CLN3-239ENST00000628023 APBB3O95704 486 aa18.54■□□□□ 0.56
CLN3-239ENST00000628023 CHRM1P11229 460 aaPredicted RBP18.54■□□□□ 0.56
CLN3-239ENST00000628023 GOT1P17174 413 aa18.54■□□□□ 0.56
CLN3-239ENST00000628023 HOXC13P31276 330 aa18.54■□□□□ 0.56
CLN3-239ENST00000628023 IL12RB1P42701 662 aa18.54■□□□□ 0.56
CLN3-239ENST00000628023 DGKEP52429 567 aa18.54■□□□□ 0.56
CLN3-239ENST00000628023 ZNF135P52742 658 aaPredicted RBP18.54■□□□□ 0.56
CLN3-239ENST00000628023 TAS2R40P59535 323 aa18.54■□□□□ 0.56
CLN3-239ENST00000628023 ECT2LQ008S8 904 aa18.54■□□□□ 0.56
CLN3-239ENST00000628023 KIF5AQ12840 1032 aa18.54■□□□□ 0.56
CLN3-239ENST00000628023 DPYSL2Q16555 572 aa18.54■□□□□ 0.56
CLN3-239ENST00000628023 AASDHQ4L235 1098 aaPredicted RBP18.54■□□□□ 0.56
CLN3-239ENST00000628023 TXNRD3NBQ6F5E7 133 aa18.54■□□□□ 0.56
CLN3-239ENST00000628023 ZNF783Q6ZMS7 281 aa18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms