RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 VANGL2Q9ULK5 521 aa22.55■■□□□ 1.2
PNKP-220ENST00000627232 SLC27A5Q9Y2P5 690 aa22.55■■□□□ 1.2
PNKP-220ENST00000627232 ARL2BPQ9Y2Y0 163 aa22.55■■□□□ 1.2
PNKP-220ENST00000627232 AAR2Q9Y312 384 aaKnown RBP22.55■■□□□ 1.2
PNKP-220ENST00000627232 COPEO14579 308 aa22.54■■□□□ 1.2
PNKP-220ENST00000627232 ZDHHC11BP0C7U3 371 aa22.54■■□□□ 1.2
PNKP-220ENST00000627232 RHOQP17081 205 aa22.54■■□□□ 1.2
PNKP-220ENST00000627232 MAGEA9P43362 315 aa22.54■■□□□ 1.2
PNKP-220ENST00000627232 MGAT5Q09328 741 aa22.54■■□□□ 1.2
PNKP-220ENST00000627232 C1orf53Q5VUE5 145 aa22.54■■□□□ 1.2
PNKP-220ENST00000627232 TMEM173Q86WV6 379 aaPredicted RBP22.54■■□□□ 1.2
PNKP-220ENST00000627232 CHSY1Q86X52 802 aa22.54■■□□□ 1.2
PNKP-220ENST00000627232 UMODL1-AS1Q8N2C9 162 aa22.54■■□□□ 1.2
PNKP-220ENST00000627232 ZNF276Q8N554 614 aa22.54■■□□□ 1.2
PNKP-220ENST00000627232 CNTD1Q8N815 330 aa22.54■■□□□ 1.2
PNKP-220ENST00000627232 ZNF75CPQ92670 426 aaPredicted RBP22.54■■□□□ 1.2
PNKP-220ENST00000627232 FATE1Q969F0 183 aa22.54■■□□□ 1.2
PNKP-220ENST00000627232 BTN2A3PQ96KV6 586 aa22.54■■□□□ 1.2
PNKP-220ENST00000627232 FCRL5Q96RD9 977 aa22.54■■□□□ 1.2
PNKP-220ENST00000627232 TTLL2Q9BWV7 592 aa22.54■■□□□ 1.2
PNKP-220ENST00000627232 PPP1R12CQ9BZL4 782 aa22.54■■□□□ 1.2
PNKP-220ENST00000627232 CRISPLD1Q9H336 500 aa22.54■■□□□ 1.2
PNKP-220ENST00000627232 SLC17A7Q9P2U7 560 aa22.54■■□□□ 1.2
PNKP-220ENST00000627232 MTRRQ9UBK8 725 aa22.54■■□□□ 1.2
PNKP-220ENST00000627232 BACE2Q9Y5Z0 518 aa22.54■■□□□ 1.2
PNKP-220ENST00000627232 IGLV3-10A0A075B6K4 115 aa22.53■■□□□ 1.2
PNKP-220ENST00000627232 RFPL1O75677 317 aa22.53■■□□□ 1.2
PNKP-220ENST00000627232 ANXA9O76027 345 aa22.53■■□□□ 1.2
PNKP-220ENST00000627232 MYCP01106 439 aaPredicted RBP22.53■■□□□ 1.2
PNKP-220ENST00000627232 IGLV3-27P01718 113 aa22.53■■□□□ 1.2
PNKP-220ENST00000627232 ETV4P43268 484 aa22.53■■□□□ 1.2
PNKP-220ENST00000627232 NDST2P52849 883 aa22.53■■□□□ 1.2
PNKP-220ENST00000627232 ATN1P54259 1190 aaPredicted RBP22.53■■□□□ 1.2
PNKP-220ENST00000627232 HTRA3P83110 453 aa22.53■■□□□ 1.2
PNKP-220ENST00000627232 RING1Q06587 406 aa22.53■■□□□ 1.2
PNKP-220ENST00000627232 USP41Q3LFD5 358 aa22.53■■□□□ 1.2
PNKP-220ENST00000627232 MS4A13Q5J8X5 152 aa22.53■■□□□ 1.2
PNKP-220ENST00000627232 RASIP1Q5U651 963 aa22.53■■□□□ 1.2
PNKP-220ENST00000627232 SLC8B1Q6J4K2 584 aa22.53■■□□□ 1.2
PNKP-220ENST00000627232 CGB2Q6NT52 195 aa22.53■■□□□ 1.2
PNKP-220ENST00000627232 ARHGAP36Q6ZRI8 547 aa22.53■■□□□ 1.2
PNKP-220ENST00000627232 TAS1R1Q7RTX1 841 aa22.53■■□□□ 1.2
PNKP-220ENST00000627232 TMEM135Q86UB9 458 aa22.53■■□□□ 1.2
PNKP-220ENST00000627232 FBXO22Q8NEZ5 403 aa22.53■■□□□ 1.2
PNKP-220ENST00000627232 GPR152Q8TDT2 470 aa22.53■■□□□ 1.2
PNKP-220ENST00000627232 ZYG11BQ9C0D3 744 aa22.53■■□□□ 1.2
PNKP-220ENST00000627232 GLOD4Q9HC38 313 aa22.53■■□□□ 1.2
PNKP-220ENST00000627232 TMEM248Q9NWD8 314 aa22.53■■□□□ 1.2
PNKP-220ENST00000627232 MARCH2Q9P0N8 246 aa22.53■■□□□ 1.2
PNKP-220ENST00000627232 DNAH12Q6ZR08 3092 aa22.53■■□□□ 1.2
PNKP-220ENST00000627232 FAM237BA0A1B0GVD1 139 aa22.52■■□□□ 1.2
PNKP-220ENST00000627232 SLC38A8A6NNN8 435 aa22.52■■□□□ 1.2
PNKP-220ENST00000627232 EDF1O60869 148 aaKnown RBP22.52■■□□□ 1.2
PNKP-220ENST00000627232 SOAT2O75908 522 aa22.52■■□□□ 1.2
PNKP-220ENST00000627232 USP1O94782 785 aa22.52■■□□□ 1.2
PNKP-220ENST00000627232 FSBPO95073 299 aa22.52■■□□□ 1.2
PNKP-220ENST00000627232 ALDH7A1P49419 539 aaKnown RBP22.52■■□□□ 1.2
PNKP-220ENST00000627232 KPNA1P52294 538 aaPredicted RBP22.52■■□□□ 1.2
PNKP-220ENST00000627232 TLE2Q04725 743 aa22.52■■□□□ 1.2
PNKP-220ENST00000627232 CDH17Q12864 832 aa22.52■■□□□ 1.2
PNKP-220ENST00000627232 IKBKEQ14164 716 aa22.52■■□□□ 1.2
PNKP-220ENST00000627232 ANO4Q32M45 955 aa22.52■■□□□ 1.2
PNKP-220ENST00000627232 C10orf120Q5SQS8 335 aa22.52■■□□□ 1.2
PNKP-220ENST00000627232 CNKSR3Q6P9H4 555 aa22.52■■□□□ 1.2
PNKP-220ENST00000627232 PRSS55Q6UWB4 352 aaPredicted RBP22.52■■□□□ 1.2
PNKP-220ENST00000627232 RNF168Q8IYW5 571 aaPredicted RBP22.52■■□□□ 1.2
PNKP-220ENST00000627232 DNAAF3Q8N9W5 541 aa22.52■■□□□ 1.2
PNKP-220ENST00000627232 ACMSDQ8TDX5 336 aa22.52■■□□□ 1.2
PNKP-220ENST00000627232 CDK5RAP1Q96SZ6 601 aaKnown RBP22.52■■□□□ 1.2
PNKP-220ENST00000627232 UBE2OQ9C0C9 1292 aaKnown RBP22.52■■□□□ 1.2
PNKP-220ENST00000627232 IL22Q9GZX6 179 aa22.52■■□□□ 1.2
PNKP-220ENST00000627232 IQCGQ9H095 443 aaKnown RBP22.52■■□□□ 1.2
PNKP-220ENST00000627232 PIH1D1Q9NWS0 290 aaKnown RBP22.52■■□□□ 1.2
PNKP-220ENST00000627232 PHTF1Q9UMS5 762 aa22.52■■□□□ 1.2
PNKP-220ENST00000627232 CDY1Q9Y6F8 540 aa22.52■■□□□ 1.2
PNKP-220ENST00000627232 RPS6KL1Q9Y6S9 549 aa22.52■■□□□ 1.2
PNKP-220ENST00000627232 HMX2A2RU54 273 aa22.52■■□□□ 1.19
PNKP-220ENST00000627232 PBX3P40426 434 aa22.52■■□□□ 1.19
PNKP-220ENST00000627232 MNX1P50219 401 aaPredicted RBP22.52■■□□□ 1.19
PNKP-220ENST00000627232 DUSP4Q13115 394 aa22.52■■□□□ 1.19
PNKP-220ENST00000627232 RNF43Q68DV7 783 aa22.52■■□□□ 1.19
PNKP-220ENST00000627232 PACS1Q6VY07 963 aa22.52■■□□□ 1.19
PNKP-220ENST00000627232 TRPM8Q7Z2W7 1104 aa22.52■■□□□ 1.19
PNKP-220ENST00000627232 DEFB128Q7Z7B8 93 aa22.52■■□□□ 1.19
PNKP-220ENST00000627232 CERS2Q96G23 380 aa22.52■■□□□ 1.19
PNKP-220ENST00000627232 SRPK1Q96SB4 655 aaKnown RBP22.52■■□□□ 1.19
PNKP-220ENST00000627232 CRISPLD2Q9H0B8 497 aa22.52■■□□□ 1.19
PNKP-220ENST00000627232 CWH43Q9H720 699 aa22.52■■□□□ 1.19
PNKP-220ENST00000627232 NDFIP2Q9NV92 336 aa22.52■■□□□ 1.19
PNKP-220ENST00000627232 MPP6Q9NZW5 540 aa22.52■■□□□ 1.19
PNKP-220ENST00000627232 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP22.51■■□□□ 1.19
PNKP-220ENST00000627232 USP12O75317 370 aa22.51■■□□□ 1.19
PNKP-220ENST00000627232 TUFMP49411 452 aaKnown RBP22.51■■□□□ 1.19
PNKP-220ENST00000627232 PAPOLAP51003 745 aaKnown RBP22.51■■□□□ 1.19
PNKP-220ENST00000627232 GEMP55040 296 aa22.51■■□□□ 1.19
PNKP-220ENST00000627232 OLIG2Q13516 323 aa22.51■■□□□ 1.19
PNKP-220ENST00000627232 BMPR2Q13873 1038 aa22.51■■□□□ 1.19
PNKP-220ENST00000627232 PSMD5Q16401 504 aa22.51■■□□□ 1.19
PNKP-220ENST00000627232 TRIM60Q495X7 471 aa22.51■■□□□ 1.19
PNKP-220ENST00000627232 LIN28BQ6ZN17 250 aaKnown RBP eCLIP22.51■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms