RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 OLFML1Q6UWY5 402 aa14.01□□□□□ -0.17
TRIM28-211ENST00000597968 SETD3Q86TU7 594 aaPredicted RBP14.01□□□□□ -0.17
TRIM28-211ENST00000597968 TRIM69Q86WT6 500 aa14.01□□□□□ -0.17
TRIM28-211ENST00000597968 STK40Q8N2I9 435 aa14.01□□□□□ -0.17
TRIM28-211ENST00000597968 AADATQ8N5Z0 425 aa14.01□□□□□ -0.17
TRIM28-211ENST00000597968 MFSD2AQ8NA29 543 aa14.01□□□□□ -0.17
TRIM28-211ENST00000597968 OR14C36Q8NHC7 312 aa14.01□□□□□ -0.17
TRIM28-211ENST00000597968 FAM174AQ8TBP5 190 aa14.01□□□□□ -0.17
TRIM28-211ENST00000597968 ALG14Q96F25 216 aa14.01□□□□□ -0.17
TRIM28-211ENST00000597968 RPL10LQ96L21 214 aaKnown RBP14.01□□□□□ -0.17
TRIM28-211ENST00000597968 C1orf74Q96LT6 269 aa14.01□□□□□ -0.17
TRIM28-211ENST00000597968 FEM1AQ9BSK4 669 aa14.01□□□□□ -0.17
TRIM28-211ENST00000597968 MTG2Q9H4K7 406 aa14.01□□□□□ -0.17
TRIM28-211ENST00000597968 SCUBE2Q9NQ36 999 aa14.01□□□□□ -0.17
TRIM28-211ENST00000597968 FTSJ1Q9UET6 329 aa14.01□□□□□ -0.17
TRIM28-211ENST00000597968 HS3ST2Q9Y278 367 aa14.01□□□□□ -0.17
TRIM28-211ENST00000597968 FARP1Q9Y4F1 1045 aaPredicted RBP14.01□□□□□ -0.17
TRIM28-211ENST00000597968 TBC1D3DA0A087WVF3 549 aa14□□□□□ -0.17
TRIM28-211ENST00000597968 TBC1D3IA0A087WXS9 549 aa14□□□□□ -0.17
TRIM28-211ENST00000597968 TBC1D3EA0A087X179 549 aa14□□□□□ -0.17
TRIM28-211ENST00000597968 TBC1D3KA0A087X1G2 549 aa14□□□□□ -0.17
TRIM28-211ENST00000597968 TBC1D3FA6NER0 549 aaPredicted RBP14□□□□□ -0.17
TRIM28-211ENST00000597968 TBC1D3LB9A6J9 549 aa14□□□□□ -0.17
TRIM28-211ENST00000597968 TLR4O00206 839 aa14□□□□□ -0.17
TRIM28-211ENST00000597968 TAF4O00268 1085 aa14□□□□□ -0.17
TRIM28-211ENST00000597968 ITGAVP06756 1048 aa14□□□□□ -0.17
TRIM28-211ENST00000597968 TBC1D3HP0C7X1 549 aa14□□□□□ -0.17
TRIM28-211ENST00000597968 CDH5P33151 784 aaPredicted RBP14□□□□□ -0.17
TRIM28-211ENST00000597968 DRD3P35462 400 aa14□□□□□ -0.17
TRIM28-211ENST00000597968 USP8P40818 1118 aa14□□□□□ -0.17
TRIM28-211ENST00000597968 GABRB2P47870 512 aa14□□□□□ -0.17
TRIM28-211ENST00000597968 PSMD8P48556 350 aa14□□□□□ -0.17
TRIM28-211ENST00000597968 CLCN6P51797 869 aa14□□□□□ -0.17
TRIM28-211ENST00000597968 KCNJ12Q14500 433 aa14□□□□□ -0.17
TRIM28-211ENST00000597968 TBC1D3GQ6DHY5 549 aa14□□□□□ -0.17
TRIM28-211ENST00000597968 TBC1D3CQ6IPX1 549 aa14□□□□□ -0.17
TRIM28-211ENST00000597968 ARCQ7LC44 396 aa14□□□□□ -0.17
TRIM28-211ENST00000597968 IRF2BP1Q8IU81 584 aa14□□□□□ -0.17
TRIM28-211ENST00000597968 TBC1D3Q8IZP1 549 aaPredicted RBP14□□□□□ -0.17
TRIM28-211ENST00000597968 CACTIN-AS1Q8N1I8 211 aa14□□□□□ -0.17
TRIM28-211ENST00000597968 PDCD7Q8N8D1 485 aaKnown RBP14□□□□□ -0.17
TRIM28-211ENST00000597968 SAP25Q8TEE9 199 aa14□□□□□ -0.17
TRIM28-211ENST00000597968 NT5C3BQ969T7 300 aa14□□□□□ -0.17
TRIM28-211ENST00000597968 SERAC1Q96JX3 654 aa14□□□□□ -0.17
TRIM28-211ENST00000597968 SLC6A18Q96N87 628 aa14□□□□□ -0.17
TRIM28-211ENST00000597968 CRACR2AQ9BSW2 395 aa14□□□□□ -0.17
TRIM28-211ENST00000597968 C2orf49Q9BVC5 232 aaPredicted RBP14□□□□□ -0.17
TRIM28-211ENST00000597968 RETREG1Q9H6L5 497 aa14□□□□□ -0.17
TRIM28-211ENST00000597968 SYNCQ9H7C4 482 aa14□□□□□ -0.17
TRIM28-211ENST00000597968 PREBQ9HCU5 417 aa14□□□□□ -0.17
TRIM28-211ENST00000597968 AASDHPPTQ9NRN7 309 aa14□□□□□ -0.17
TRIM28-211ENST00000597968 ARHGEF38Q9NXL2 777 aa14□□□□□ -0.17
TRIM28-211ENST00000597968 DACH1Q9UI36 760 aa14□□□□□ -0.17
TRIM28-211ENST00000597968 PPM1HQ9ULR3 514 aa14□□□□□ -0.17
TRIM28-211ENST00000597968 LHX6Q9UPM6 363 aa14□□□□□ -0.17
TRIM28-211ENST00000597968 BTBD3Q9Y2F9 522 aa14□□□□□ -0.17
TRIM28-211ENST00000597968 GPSM3Q9Y4H4 160 aa14□□□□□ -0.17
TRIM28-211ENST00000597968 ERCC5P28715 1186 aaPredicted RBP13.99□□□□□ -0.17
TRIM28-211ENST00000597968 HNF1BP35680 557 aa13.99□□□□□ -0.17
TRIM28-211ENST00000597968 MTIF2P46199 727 aaKnown RBP13.99□□□□□ -0.17
TRIM28-211ENST00000597968 CXCR3P49682 368 aa13.99□□□□□ -0.17
TRIM28-211ENST00000597968 NXPH1P58417 271 aa13.99□□□□□ -0.17
TRIM28-211ENST00000597968 PITX1P78337 314 aaPredicted RBP13.99□□□□□ -0.17
TRIM28-211ENST00000597968 TAF5Q15542 800 aa13.99□□□□□ -0.17
TRIM28-211ENST00000597968 TPD52L1Q16890 204 aaPredicted RBP13.99□□□□□ -0.17
TRIM28-211ENST00000597968 SETMARQ53H47 684 aaPredicted RBP13.99□□□□□ -0.17
TRIM28-211ENST00000597968 KCNT1Q5JUK3 1230 aa13.99□□□□□ -0.17
TRIM28-211ENST00000597968 OR6B2Q6IFH4 312 aa13.99□□□□□ -0.17
TRIM28-211ENST00000597968 ZNF783Q6ZMS7 281 aa13.99□□□□□ -0.17
TRIM28-211ENST00000597968 FAM183BPQ6ZVS7 135 aa13.99□□□□□ -0.17
TRIM28-211ENST00000597968 ZSCAN30Q86W11 494 aa13.99□□□□□ -0.17
TRIM28-211ENST00000597968 FAM71AQ8IYT1 594 aa13.99□□□□□ -0.17
TRIM28-211ENST00000597968 SH2D3CQ8N5H7 860 aa13.99□□□□□ -0.17
TRIM28-211ENST00000597968 TMEM35BQ8NCS4 154 aa13.99□□□□□ -0.17
TRIM28-211ENST00000597968 MSANTD4Q8NCY6 345 aa13.99□□□□□ -0.17
TRIM28-211ENST00000597968 NPY6RQ99463 290 aa13.99□□□□□ -0.17
TRIM28-211ENST00000597968 WDCPQ9H6R7 721 aa13.99□□□□□ -0.17
TRIM28-211ENST00000597968 EBF2Q9HAK2 575 aa13.99□□□□□ -0.17
TRIM28-211ENST00000597968 ACP6Q9NPH0 428 aa13.99□□□□□ -0.17
TRIM28-211ENST00000597968 ARHGAP20Q9P2F6 1191 aa13.99□□□□□ -0.17
TRIM28-211ENST00000597968 VPS28Q9UK41 221 aa13.99□□□□□ -0.17
TRIM28-211ENST00000597968 DNAJC12Q9UKB3 198 aa13.99□□□□□ -0.17
TRIM28-211ENST00000597968 OR51B4Q9Y5P0 310 aa13.99□□□□□ -0.17
TRIM28-211ENST00000597968 HS3ST4Q9Y661 456 aa13.99□□□□□ -0.17
TRIM28-211ENST00000597968 PRAMEF26H0Y7S4 382 aa13.98□□□□□ -0.17
TRIM28-211ENST00000597968 M0QYT0 321 aa13.98□□□□□ -0.17
TRIM28-211ENST00000597968 PAGE1O75459 146 aa13.98□□□□□ -0.17
TRIM28-211ENST00000597968 LDOC1O95751 146 aaPredicted RBP13.98□□□□□ -0.17
TRIM28-211ENST00000597968 LSM8O95777 96 aaKnown RBP13.98□□□□□ -0.17
TRIM28-211ENST00000597968 WNT1P04628 370 aa13.98□□□□□ -0.17
TRIM28-211ENST00000597968 EPHA8P29322 1005 aaPredicted RBP13.98□□□□□ -0.17
TRIM28-211ENST00000597968 CLCN1P35523 988 aa13.98□□□□□ -0.17
TRIM28-211ENST00000597968 STK19P49842 368 aaPredicted RBP13.98□□□□□ -0.17
TRIM28-211ENST00000597968 CAMK2BQ13554 666 aa13.98□□□□□ -0.17
TRIM28-211ENST00000597968 STAT4Q14765 748 aa13.98□□□□□ -0.17
TRIM28-211ENST00000597968 DLG2Q15700 870 aa13.98□□□□□ -0.17
TRIM28-211ENST00000597968 C6orf118Q5T5N4 469 aa13.98□□□□□ -0.17
TRIM28-211ENST00000597968 GJB7Q6PEY0 223 aa13.98□□□□□ -0.17
TRIM28-211ENST00000597968 LRRC31Q6UY01 552 aa13.98□□□□□ -0.17
TRIM28-211ENST00000597968 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms