RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 JCHAINP01591 159 aa11.51□□□□□ -0.57
LIG3-204ENST00000585740 RHOQP17081 205 aa11.51□□□□□ -0.57
LIG3-204ENST00000585740 NFKB1P19838 968 aa11.51□□□□□ -0.57
LIG3-204ENST00000585740 RFC2P35250 354 aa11.51□□□□□ -0.57
LIG3-204ENST00000585740 GRIA1P42261 906 aa11.51□□□□□ -0.57
LIG3-204ENST00000585740 TUBP50607 506 aa11.51□□□□□ -0.57
LIG3-204ENST00000585740 GEMP55040 296 aa11.51□□□□□ -0.57
LIG3-204ENST00000585740 RING1Q06587 406 aa11.51□□□□□ -0.57
LIG3-204ENST00000585740 NIPAL4Q0D2K0 466 aa11.51□□□□□ -0.57
LIG3-204ENST00000585740 CDH17Q12864 832 aa11.51□□□□□ -0.57
LIG3-204ENST00000585740 ZBTB17Q13105 803 aa11.51□□□□□ -0.57
LIG3-204ENST00000585740 CRYMQ14894 314 aa11.51□□□□□ -0.57
LIG3-204ENST00000585740 DBN1Q16643 649 aa11.51□□□□□ -0.57
LIG3-204ENST00000585740 LRIT3Q3SXY7 679 aa11.51□□□□□ -0.57
LIG3-204ENST00000585740 MGAT5BQ3V5L5 792 aa11.51□□□□□ -0.57
LIG3-204ENST00000585740 AFMIDQ63HM1 303 aa11.51□□□□□ -0.57
LIG3-204ENST00000585740 RNF43Q68DV7 783 aa11.51□□□□□ -0.57
LIG3-204ENST00000585740 SH2D5Q6ZV89 423 aa11.51□□□□□ -0.57
LIG3-204ENST00000585740 CCDC117Q8IWD4 279 aaPredicted RBP11.51□□□□□ -0.57
LIG3-204ENST00000585740 ARHGAP12Q8IWW6 846 aa11.51□□□□□ -0.57
LIG3-204ENST00000585740 TP53INP2Q8IXH6 220 aa11.51□□□□□ -0.57
LIG3-204ENST00000585740 CRIPAKQ8N1N5 446 aa11.51□□□□□ -0.57
LIG3-204ENST00000585740 DNAAF3Q8N9W5 541 aa11.51□□□□□ -0.57
LIG3-204ENST00000585740 NETO2Q8NC67 525 aa11.51□□□□□ -0.57
LIG3-204ENST00000585740 ZNF398Q8TD17 642 aa11.51□□□□□ -0.57
LIG3-204ENST00000585740 ARNTL2Q8WYA1 636 aa11.51□□□□□ -0.57
LIG3-204ENST00000585740 OVCA2Q8WZ82 227 aa11.51□□□□□ -0.57
LIG3-204ENST00000585740 CCT6BQ92526 530 aa11.51□□□□□ -0.57
LIG3-204ENST00000585740 SERAC1Q96JX3 654 aa11.51□□□□□ -0.57
LIG3-204ENST00000585740 BTN2A3PQ96KV6 586 aa11.51□□□□□ -0.57
LIG3-204ENST00000585740 AGAP3Q96P47 875 aa11.51□□□□□ -0.57
LIG3-204ENST00000585740 FCRL5Q96RD9 977 aa11.51□□□□□ -0.57
LIG3-204ENST00000585740 IL12RB2Q99665 862 aa11.51□□□□□ -0.57
LIG3-204ENST00000585740 CEP41Q9BYV8 373 aa11.51□□□□□ -0.57
LIG3-204ENST00000585740 IL22Q9GZX6 179 aa11.51□□□□□ -0.57
LIG3-204ENST00000585740 PLAC1Q9HBJ0 212 aa11.51□□□□□ -0.57
LIG3-204ENST00000585740 MTPAPQ9NVV4 582 aaKnown RBP eCLIP11.51□□□□□ -0.57
LIG3-204ENST00000585740 HAUS2Q9NVX0 235 aa11.51□□□□□ -0.57
LIG3-204ENST00000585740 SYBUQ9NX95 663 aa11.51□□□□□ -0.57
LIG3-204ENST00000585740 VANGL2Q9ULK5 521 aa11.51□□□□□ -0.57
LIG3-204ENST00000585740 BACE2Q9Y5Z0 518 aa11.51□□□□□ -0.57
LIG3-204ENST00000585740 VCANP13611 3396 aa11.5□□□□□ -0.57
LIG3-204ENST00000585740 FAM237BA0A1B0GVD1 139 aa11.5□□□□□ -0.57
LIG3-204ENST00000585740 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.5□□□□□ -0.57
LIG3-204ENST00000585740 MSI1O43347 362 aaKnown RBP11.5□□□□□ -0.57
LIG3-204ENST00000585740 EDF1O60869 148 aaKnown RBP11.5□□□□□ -0.57
LIG3-204ENST00000585740 NEBLO76041 1014 aa11.5□□□□□ -0.57
LIG3-204ENST00000585740 MOCS2O96007 188 aaPredicted RBP11.5□□□□□ -0.57
LIG3-204ENST00000585740 IL1BP01584 269 aa11.5□□□□□ -0.57
LIG3-204ENST00000585740 DHRS4L1P0CG22 281 aa11.5□□□□□ -0.57
LIG3-204ENST00000585740 CSH1P0DML2 217 aa11.5□□□□□ -0.57
LIG3-204ENST00000585740 CSH2P0DML3 217 aa11.5□□□□□ -0.57
LIG3-204ENST00000585740 PYGBP11216 843 aa11.5□□□□□ -0.57
LIG3-204ENST00000585740 CCNB1P14635 433 aa11.5□□□□□ -0.57
LIG3-204ENST00000585740 CD68P34810 354 aaPredicted RBP11.5□□□□□ -0.57
LIG3-204ENST00000585740 TUFMP49411 452 aaKnown RBP11.5□□□□□ -0.57
LIG3-204ENST00000585740 GPR15P49685 360 aa11.5□□□□□ -0.57
LIG3-204ENST00000585740 ARPP19P56211 112 aa11.5□□□□□ -0.57
LIG3-204ENST00000585740 EFEMP1Q12805 493 aa11.5□□□□□ -0.57
LIG3-204ENST00000585740 ZKSCAN8Q15776 578 aaPredicted RBP11.5□□□□□ -0.57
LIG3-204ENST00000585740 USP41Q3LFD5 358 aa11.5□□□□□ -0.57
LIG3-204ENST00000585740 STXBP5Q5T5C0 1151 aa11.5□□□□□ -0.57
LIG3-204ENST00000585740 GRTP1Q5TC63 336 aa11.5□□□□□ -0.57
LIG3-204ENST00000585740 C1orf53Q5VUE5 145 aa11.5□□□□□ -0.57
LIG3-204ENST00000585740 SDHAF4Q5VUM1 108 aa11.5□□□□□ -0.57
LIG3-204ENST00000585740 FYB2Q5VWT5 728 aa11.5□□□□□ -0.57
LIG3-204ENST00000585740 CNKSR3Q6P9H4 555 aa11.5□□□□□ -0.57
LIG3-204ENST00000585740 TRMT10BQ6PF06 316 aaKnown RBP11.5□□□□□ -0.57
LIG3-204ENST00000585740 SLC39A5Q6ZMH5 540 aa11.5□□□□□ -0.57
LIG3-204ENST00000585740 TRPM8Q7Z2W7 1104 aa11.5□□□□□ -0.57
LIG3-204ENST00000585740 NECAB2Q7Z6G3 386 aa11.5□□□□□ -0.57
LIG3-204ENST00000585740 RASSF3Q86WH2 238 aa11.5□□□□□ -0.57
LIG3-204ENST00000585740 TDHQ8IZJ6 230 aa11.5□□□□□ -0.57
LIG3-204ENST00000585740 UMODL1-AS1Q8N2C9 162 aa11.5□□□□□ -0.57
LIG3-204ENST00000585740 ATAD1Q8NBU5 361 aa11.5□□□□□ -0.57
LIG3-204ENST00000585740 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.5□□□□□ -0.57
LIG3-204ENST00000585740 PDZD8Q8NEN9 1154 aa11.5□□□□□ -0.57
LIG3-204ENST00000585740 OR52K1Q8NGK4 314 aa11.5□□□□□ -0.57
LIG3-204ENST00000585740 RAB3IL1Q8TBN0 382 aa11.5□□□□□ -0.57
LIG3-204ENST00000585740 DIS3LQ8TF46 1054 aaKnown RBP11.5□□□□□ -0.57
LIG3-204ENST00000585740 ZNF75CPQ92670 426 aaPredicted RBP11.5□□□□□ -0.57
LIG3-204ENST00000585740 OXNAD1Q96HP4 312 aaPredicted RBP11.5□□□□□ -0.57
LIG3-204ENST00000585740 CELF6Q96J87 481 aaKnown RBP11.5□□□□□ -0.57
LIG3-204ENST00000585740 PGLYRP2Q96PD5 576 aa11.5□□□□□ -0.57
LIG3-204ENST00000585740 CPNE1Q99829 537 aa11.5□□□□□ -0.57
LIG3-204ENST00000585740 MLPHQ9BV36 600 aaPredicted RBP11.5□□□□□ -0.57
LIG3-204ENST00000585740 TTLL2Q9BWV7 592 aa11.5□□□□□ -0.57
LIG3-204ENST00000585740 UBE2OQ9C0C9 1292 aaKnown RBP11.5□□□□□ -0.57
LIG3-204ENST00000585740 ZYG11BQ9C0D3 744 aa11.5□□□□□ -0.57
LIG3-204ENST00000585740 SLC39A8Q9C0K1 460 aa11.5□□□□□ -0.57
LIG3-204ENST00000585740 GLOD4Q9HC38 313 aa11.5□□□□□ -0.57
LIG3-204ENST00000585740 PRDM5Q9NQX1 630 aaPredicted RBP11.5□□□□□ -0.57
LIG3-204ENST00000585740 SMYD2Q9NRG4 433 aa11.5□□□□□ -0.57
LIG3-204ENST00000585740 TMEM248Q9NWD8 314 aa11.5□□□□□ -0.57
LIG3-204ENST00000585740 NSMCE4AQ9NXX6 385 aa11.5□□□□□ -0.57
LIG3-204ENST00000585740 MARCH2Q9P0N8 246 aa11.5□□□□□ -0.57
LIG3-204ENST00000585740 TXNDC16Q9P2K2 825 aa11.5□□□□□ -0.57
LIG3-204ENST00000585740 HSFX1Q9UBD0 423 aa11.5□□□□□ -0.57
LIG3-204ENST00000585740 MTRRQ9UBK8 725 aa11.5□□□□□ -0.57
LIG3-204ENST00000585740 PHTF1Q9UMS5 762 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms