RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 SLC11A2P49281 568 aa10.77□□□□□ -0.69
SS18-217ENST00000580958 HARS2P49590 506 aaKnown RBP10.77□□□□□ -0.69
SS18-217ENST00000580958 CLCN4P51793 760 aa10.77□□□□□ -0.69
SS18-217ENST00000580958 ZNF33AQ06730 810 aa10.77□□□□□ -0.69
SS18-217ENST00000580958 MTM1Q13496 603 aa10.77□□□□□ -0.69
SS18-217ENST00000580958 SHHQ15465 462 aa10.77□□□□□ -0.69
SS18-217ENST00000580958 C5orf22Q49AR2 442 aa10.77□□□□□ -0.69
SS18-217ENST00000580958 PABPC1LQ4VXU2 614 aaKnown RBP10.77□□□□□ -0.69
SS18-217ENST00000580958 ACBD5Q5T8D3 534 aaPredicted RBP10.77□□□□□ -0.69
SS18-217ENST00000580958 TXNDC8Q6A555 127 aa10.77□□□□□ -0.69
SS18-217ENST00000580958 RFWD3Q6PCD5 774 aa10.77□□□□□ -0.69
SS18-217ENST00000580958 PID1Q7Z2X4 250 aa10.77□□□□□ -0.69
SS18-217ENST00000580958 DENND1CQ8IV53 801 aa10.77□□□□□ -0.69
SS18-217ENST00000580958 UMODL1-AS1Q8N2C9 162 aa10.77□□□□□ -0.69
SS18-217ENST00000580958 ARL14EPQ8N8R7 260 aaPredicted RBP10.77□□□□□ -0.69
SS18-217ENST00000580958 MCUQ8NE86 351 aa10.77□□□□□ -0.69
SS18-217ENST00000580958 EPS8L3Q8TE67 593 aaKnown RBP10.77□□□□□ -0.69
SS18-217ENST00000580958 PTCD2Q8WV60 388 aaKnown RBP10.77□□□□□ -0.69
SS18-217ENST00000580958 AZIN2Q96A70 460 aa10.77□□□□□ -0.69
SS18-217ENST00000580958 TTC25Q96NG3 672 aa10.77□□□□□ -0.69
SS18-217ENST00000580958 SERPINB12Q96P63 405 aa10.77□□□□□ -0.69
SS18-217ENST00000580958 TSGA13Q96PP4 275 aa10.77□□□□□ -0.69
SS18-217ENST00000580958 SLC22A12Q96S37 553 aa10.77□□□□□ -0.69
SS18-217ENST00000580958 CYP2S1Q96SQ9 504 aa10.77□□□□□ -0.69
SS18-217ENST00000580958 WDR83Q9BRX9 315 aaKnown RBP10.77□□□□□ -0.69
SS18-217ENST00000580958 CENPHQ9H3R5 247 aa10.77□□□□□ -0.69
SS18-217ENST00000580958 SMPD4Q9NXE4 827 aa10.77□□□□□ -0.69
SS18-217ENST00000580958 ZNF212Q9UDV6 495 aa10.77□□□□□ -0.69
SS18-217ENST00000580958 NUP210Q8TEM1 1887 aaPredicted RBP10.76□□□□□ -0.69
SS18-217ENST00000580958 TLDC2A0PJX2 215 aa10.76□□□□□ -0.69
SS18-217ENST00000580958 RASA4BC9J798 803 aa10.76□□□□□ -0.69
SS18-217ENST00000580958 NRG2O14511 850 aaPredicted RBP10.76□□□□□ -0.69
SS18-217ENST00000580958 TRDMT1O14717 391 aaKnown RBP10.76□□□□□ -0.69
SS18-217ENST00000580958 ZBTB24O43167 697 aaPredicted RBP10.76□□□□□ -0.69
SS18-217ENST00000580958 RASA4O43374 803 aa10.76□□□□□ -0.69
SS18-217ENST00000580958 MAFKO60675 156 aa10.76□□□□□ -0.69
SS18-217ENST00000580958 CLASP2O75122 1294 aaKnown RBP10.76□□□□□ -0.69
SS18-217ENST00000580958 AVILO75366 819 aa10.76□□□□□ -0.69
SS18-217ENST00000580958 KLKB1P03952 638 aa10.76□□□□□ -0.69
SS18-217ENST00000580958 MYL4P12829 197 aa10.76□□□□□ -0.69
SS18-217ENST00000580958 NFKB1P19838 968 aa10.76□□□□□ -0.69
SS18-217ENST00000580958 CD68P34810 354 aaPredicted RBP10.76□□□□□ -0.69
SS18-217ENST00000580958 PAPOLAP51003 745 aaKnown RBP10.76□□□□□ -0.69
SS18-217ENST00000580958 NDST2P52849 883 aa10.76□□□□□ -0.69
SS18-217ENST00000580958 GYS2P54840 703 aa10.76□□□□□ -0.69
SS18-217ENST00000580958 IFI35P80217 286 aaPredicted RBP10.76□□□□□ -0.69
SS18-217ENST00000580958 SMAD3P84022 425 aaKnown RBP10.76□□□□□ -0.69
SS18-217ENST00000580958 GPM6BQ13491 265 aa10.76□□□□□ -0.69
SS18-217ENST00000580958 CAMK1Q14012 370 aa10.76□□□□□ -0.69
SS18-217ENST00000580958 DSG2Q14126 1118 aa10.76□□□□□ -0.69
SS18-217ENST00000580958 PARP6Q2NL67 630 aa10.76□□□□□ -0.69
SS18-217ENST00000580958 TEX44Q53QW1 395 aa10.76□□□□□ -0.69
SS18-217ENST00000580958 AGBL2Q5U5Z8 902 aa10.76□□□□□ -0.69
SS18-217ENST00000580958 KCTD16Q68DU8 428 aa10.76□□□□□ -0.69
SS18-217ENST00000580958 ITPRIPL1Q6GPH6 555 aa10.76□□□□□ -0.69
SS18-217ENST00000580958 CAPN12Q6ZSI9 719 aa10.76□□□□□ -0.69
SS18-217ENST00000580958 GAREM2Q75VX8 874 aa10.76□□□□□ -0.69
SS18-217ENST00000580958 ZNF534Q76KX8 674 aa10.76□□□□□ -0.69
SS18-217ENST00000580958 CAND1Q86VP6 1230 aaKnown RBP10.76□□□□□ -0.69
SS18-217ENST00000580958 IGDCC3Q8IVU1 814 aa10.76□□□□□ -0.69
SS18-217ENST00000580958 CFAP52Q8N1V2 620 aa10.76□□□□□ -0.69
SS18-217ENST00000580958 FBXO36Q8NEA4 188 aa10.76□□□□□ -0.69
SS18-217ENST00000580958 PYROXD1Q8WU10 500 aa10.76□□□□□ -0.69
SS18-217ENST00000580958 MRPS31Q92665 395 aaKnown RBP10.76□□□□□ -0.69
SS18-217ENST00000580958 HMCESQ96FZ2 354 aa10.76□□□□□ -0.69
SS18-217ENST00000580958 ZFRQ96KR1 1074 aaKnown RBP10.76□□□□□ -0.69
SS18-217ENST00000580958 ATP6V1G3Q96LB4 118 aa10.76□□□□□ -0.69
SS18-217ENST00000580958 TEKT5Q96M29 485 aa10.76□□□□□ -0.69
SS18-217ENST00000580958 SAMD11Q96NU1 681 aa10.76□□□□□ -0.69
SS18-217ENST00000580958 AGAP3Q96P47 875 aa10.76□□□□□ -0.69
SS18-217ENST00000580958 GCNAQ96QF7 691 aa10.76□□□□□ -0.69
SS18-217ENST00000580958 TGS1Q96RS0 853 aaKnown RBP10.76□□□□□ -0.69
SS18-217ENST00000580958 CORO1BQ9BR76 489 aa10.76□□□□□ -0.69
SS18-217ENST00000580958 TMEM109Q9BVC6 243 aa10.76□□□□□ -0.69
SS18-217ENST00000580958 FRMD8Q9BZ67 464 aaPredicted RBP10.76□□□□□ -0.69
SS18-217ENST00000580958 VPS37BQ9H9H4 285 aa10.76□□□□□ -0.69
SS18-217ENST00000580958 MAN1C1Q9NR34 630 aa10.76□□□□□ -0.69
SS18-217ENST00000580958 ASAH2Q9NR71 780 aa10.76□□□□□ -0.69
SS18-217ENST00000580958 BCCIPQ9P287 314 aaKnown RBP eCLIP10.76□□□□□ -0.69
SS18-217ENST00000580958 RSPH14Q9UHP6 348 aa10.76□□□□□ -0.69
SS18-217ENST00000580958 TRHDEQ9UKU6 1024 aa10.76□□□□□ -0.69
SS18-217ENST00000580958 CHMP2BQ9UQN3 213 aa10.76□□□□□ -0.69
SS18-217ENST00000580958 YBX2Q9Y2T7 364 aaKnown RBP10.76□□□□□ -0.69
SS18-217ENST00000580958 CPQQ9Y646 472 aa10.76□□□□□ -0.69
SS18-217ENST00000580958 A0A087WUV0 522 aaPredicted RBP10.75□□□□□ -0.69
SS18-217ENST00000580958 A0A1W2PRU2 124 aa10.75□□□□□ -0.69
SS18-217ENST00000580958 GOLGA6CA6NDK9 693 aa10.75□□□□□ -0.69
SS18-217ENST00000580958 ARHGAP42A6NI28 874 aa10.75□□□□□ -0.69
SS18-217ENST00000580958 RASGRF2O14827 1237 aa10.75□□□□□ -0.69
SS18-217ENST00000580958 SCAMP3O14828 347 aaKnown RBP10.75□□□□□ -0.69
SS18-217ENST00000580958 MATN3O15232 486 aa10.75□□□□□ -0.69
SS18-217ENST00000580958 TSPAN3O60637 253 aa10.75□□□□□ -0.69
SS18-217ENST00000580958 RFPL2O75678 378 aa10.75□□□□□ -0.69
SS18-217ENST00000580958 OLFM2O95897 454 aa10.75□□□□□ -0.69
SS18-217ENST00000580958 GOLGA6DP0CG33 693 aa10.75□□□□□ -0.69
SS18-217ENST00000580958 EPCAMP16422 314 aa10.75□□□□□ -0.69
SS18-217ENST00000580958 GJA1P17302 382 aa10.75□□□□□ -0.69
SS18-217ENST00000580958 HDCP19113 662 aa10.75□□□□□ -0.69
SS18-217ENST00000580958 CDC25CP30307 473 aa10.75□□□□□ -0.69
SS18-217ENST00000580958 ELK3P41970 407 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms