RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 CENPIQ92674 756 aaPredicted RBP24.55■■□□□ 1.52
SHMT1-206ENST00000579558 MCEEQ96PE7 176 aa24.55■■□□□ 1.52
SHMT1-206ENST00000579558 NYNRINQ9P2P1 1898 aaKnown RBP24.54■■□□□ 1.52
SHMT1-206ENST00000579558 RRM1P23921 792 aa24.54■■□□□ 1.52
SHMT1-206ENST00000579558 PRKCIP41743 596 aa24.54■■□□□ 1.52
SHMT1-206ENST00000579558 HDAC4P56524 1084 aa24.54■■□□□ 1.52
SHMT1-206ENST00000579558 WDR45BQ5MNZ6 344 aa24.54■■□□□ 1.52
SHMT1-206ENST00000579558 C6orf118Q5T5N4 469 aa24.54■■□□□ 1.52
SHMT1-206ENST00000579558 LRSAM1Q6UWE0 723 aa24.54■■□□□ 1.52
SHMT1-206ENST00000579558 ZNF571Q7Z3V5 609 aaPredicted RBP24.54■■□□□ 1.52
SHMT1-206ENST00000579558 RABEPKQ7Z6M1 372 aa24.54■■□□□ 1.52
SHMT1-206ENST00000579558 SETD3Q86TU7 594 aaPredicted RBP24.54■■□□□ 1.52
SHMT1-206ENST00000579558 CADM4Q8NFZ8 388 aa24.54■■□□□ 1.52
SHMT1-206ENST00000579558 CEP76Q8TAP6 659 aa24.54■■□□□ 1.52
SHMT1-206ENST00000579558 ZYG11BQ9C0D3 744 aa24.54■■□□□ 1.52
SHMT1-206ENST00000579558 DOCK4Q8N1I0 1966 aa24.54■■□□□ 1.52
SHMT1-206ENST00000579558 OR1E1P30953 314 aa24.53■■□□□ 1.52
SHMT1-206ENST00000579558 PBX1P40424 430 aa24.53■■□□□ 1.52
SHMT1-206ENST00000579558 KRT83P78385 493 aa24.53■■□□□ 1.52
SHMT1-206ENST00000579558 ARTNQ5T4W7 220 aa24.53■■□□□ 1.52
SHMT1-206ENST00000579558 DCUN1D2Q6PH85 259 aa24.53■■□□□ 1.52
SHMT1-206ENST00000579558 SLC23A3Q6PIS1 610 aa24.53■■□□□ 1.52
SHMT1-206ENST00000579558 STK40Q8N2I9 435 aa24.53■■□□□ 1.52
SHMT1-206ENST00000579558 GANCQ8TET4 914 aa24.53■■□□□ 1.52
SHMT1-206ENST00000579558 PTPRN2Q92932 1015 aa24.53■■□□□ 1.52
SHMT1-206ENST00000579558 VCPIP1Q96JH7 1222 aa24.53■■□□□ 1.52
SHMT1-206ENST00000579558 PABPC3Q9H361 631 aaKnown RBP24.53■■□□□ 1.52
SHMT1-206ENST00000579558 PPARGC1AQ9UBK2 798 aaKnown RBP24.53■■□□□ 1.52
SHMT1-206ENST00000579558 OR12D3Q9UGF7 316 aa24.53■■□□□ 1.52
SHMT1-206ENST00000579558 SCML1Q9UN30 329 aa24.53■■□□□ 1.52
SHMT1-206ENST00000579558 PI4KAP42356 2102 aa24.53■■□□□ 1.52
SHMT1-206ENST00000579558 CCP110O43303 1012 aa24.52■■□□□ 1.52
SHMT1-206ENST00000579558 VAV1P15498 845 aa24.52■■□□□ 1.52
SHMT1-206ENST00000579558 MAOBP27338 520 aa24.52■■□□□ 1.52
SHMT1-206ENST00000579558 ACSL1P33121 698 aa24.52■■□□□ 1.52
SHMT1-206ENST00000579558 VASPP50552 380 aaPredicted RBP24.52■■□□□ 1.52
SHMT1-206ENST00000579558 ZNF143P52747 638 aaPredicted RBP24.52■■□□□ 1.52
SHMT1-206ENST00000579558 RPL7AP62424 266 aaKnown RBP24.52■■□□□ 1.52
SHMT1-206ENST00000579558 CST6Q15828 149 aa24.52■■□□□ 1.52
SHMT1-206ENST00000579558 ACCSLQ4AC99 568 aa24.52■■□□□ 1.52
SHMT1-206ENST00000579558 PPP1R15BQ5SWA1 713 aa24.52■■□□□ 1.52
SHMT1-206ENST00000579558 DCAF12L1Q5VU92 463 aa24.52■■□□□ 1.52
SHMT1-206ENST00000579558 MMAAQ8IVH4 418 aaKnown RBP24.52■■□□□ 1.52
SHMT1-206ENST00000579558 CCDC185Q8N715 623 aa24.52■■□□□ 1.52
SHMT1-206ENST00000579558 FRS2Q8WU20 508 aa24.52■■□□□ 1.52
SHMT1-206ENST00000579558 PSMB7Q99436 277 aa24.52■■□□□ 1.52
SHMT1-206ENST00000579558 C2orf49Q9BVC5 232 aaPredicted RBP24.52■■□□□ 1.52
SHMT1-206ENST00000579558 BTBD1Q9H0C5 482 aa24.52■■□□□ 1.52
SHMT1-206ENST00000579558 OSBPL2Q9H1P3 480 aa24.52■■□□□ 1.52
SHMT1-206ENST00000579558 TMEM9BQ9NQ34 198 aa24.52■■□□□ 1.52
SHMT1-206ENST00000579558 IFNKQ9P0W0 207 aa24.52■■□□□ 1.52
SHMT1-206ENST00000579558 SUSD2Q9UGT4 822 aa24.52■■□□□ 1.52
SHMT1-206ENST00000579558 SLC6A14Q9UN76 642 aa24.52■■□□□ 1.52
SHMT1-206ENST00000579558 NCKAP1Q9Y2A7 1128 aa24.52■■□□□ 1.52
SHMT1-206ENST00000579558 A0A1W2PQJ5 194 aa24.51■■□□□ 1.51
SHMT1-206ENST00000579558 C4orf47A7E2U8 309 aa24.51■■□□□ 1.51
SHMT1-206ENST00000579558 METTL12A8MUP2 240 aa24.51■■□□□ 1.51
SHMT1-206ENST00000579558 MID1O15344 667 aa24.51■■□□□ 1.51
SHMT1-206ENST00000579558 ATP9BO43861 1147 aa24.51■■□□□ 1.51
SHMT1-206ENST00000579558 SERPINF2P08697 491 aa24.51■■□□□ 1.51
SHMT1-206ENST00000579558 SKILP12757 684 aa24.51■■□□□ 1.51
SHMT1-206ENST00000579558 NRG1Q02297 640 aaPredicted RBP24.51■■□□□ 1.51
SHMT1-206ENST00000579558 SFSWAPQ12872 951 aaKnown RBP24.51■■□□□ 1.51
SHMT1-206ENST00000579558 ELAVL3Q14576 367 aaKnown RBP24.51■■□□□ 1.51
SHMT1-206ENST00000579558 NTAN1Q96AB6 310 aa24.51■■□□□ 1.51
SHMT1-206ENST00000579558 FAM129BQ96TA1 746 aa24.51■■□□□ 1.51
SHMT1-206ENST00000579558 PCED1AQ9H1Q7 454 aa24.51■■□□□ 1.51
SHMT1-206ENST00000579558 FBXL12Q9NXK8 326 aa24.51■■□□□ 1.51
SHMT1-206ENST00000579558 VPS51Q9UID3 782 aa24.51■■□□□ 1.51
SHMT1-206ENST00000579558 LAMA1P25391 3075 aa24.5■■□□□ 1.51
SHMT1-206ENST00000579558 NUMA1Q14980 2115 aa24.5■■□□□ 1.51
SHMT1-206ENST00000579558 A0A0D9SEW6 157 aa24.5■■□□□ 1.51
SHMT1-206ENST00000579558 DDX3XO00571 662 aaKnown RBP eCLIP24.5■■□□□ 1.512e-14■■■■□ 24.5
SHMT1-206ENST00000579558 ATMINO43313 823 aaPredicted RBP24.5■■□□□ 1.51
SHMT1-206ENST00000579558 SNAP91O60641 907 aa24.5■■□□□ 1.51
SHMT1-206ENST00000579558 SEMA4FO95754 770 aa24.5■■□□□ 1.51
SHMT1-206ENST00000579558 GNSP15586 552 aa24.5■■□□□ 1.51
SHMT1-206ENST00000579558 DESP17661 470 aa24.5■■□□□ 1.51
SHMT1-206ENST00000579558 ENGP17813 658 aa24.5■■□□□ 1.51
SHMT1-206ENST00000579558 PSMD8P48556 350 aa24.5■■□□□ 1.51
SHMT1-206ENST00000579558 DLG2Q15700 870 aa24.5■■□□□ 1.51
SHMT1-206ENST00000579558 MANEALQ5VSG8 457 aa24.5■■□□□ 1.51
SHMT1-206ENST00000579558 RWDD4Q6NW29 188 aaKnown RBP24.5■■□□□ 1.51
SHMT1-206ENST00000579558 SCYL2Q6P3W7 929 aa24.5■■□□□ 1.51
SHMT1-206ENST00000579558 USP30Q70CQ3 517 aa24.5■■□□□ 1.51
SHMT1-206ENST00000579558 DRC7Q8IY82 874 aa24.5■■□□□ 1.51
SHMT1-206ENST00000579558 SH2D3CQ8N5H7 860 aa24.5■■□□□ 1.51
SHMT1-206ENST00000579558 DCAF4L2Q8NA75 395 aa24.5■■□□□ 1.51
SHMT1-206ENST00000579558 OR7D4Q8NG98 312 aa24.5■■□□□ 1.51
SHMT1-206ENST00000579558 DNASE2BQ8WZ79 361 aa24.5■■□□□ 1.51
SHMT1-206ENST00000579558 CNPY3Q9BT09 278 aa24.5■■□□□ 1.51
SHMT1-206ENST00000579558 MIR1-1HGQ9H1L0 117 aa24.5■■□□□ 1.51
SHMT1-206ENST00000579558 C6orf106Q9H6K1 298 aaPredicted RBP24.5■■□□□ 1.51
SHMT1-206ENST00000579558 SGK2Q9HBY8 427 aa24.5■■□□□ 1.51
SHMT1-206ENST00000579558 FSCN3Q9NQT6 498 aa24.5■■□□□ 1.51
SHMT1-206ENST00000579558 PARVAQ9NVD7 372 aa24.5■■□□□ 1.51
SHMT1-206ENST00000579558 ZNF212Q9UDV6 495 aa24.5■■□□□ 1.51
SHMT1-206ENST00000579558 ILVBLA1L0T0 632 aa24.49■■□□□ 1.51
SHMT1-206ENST00000579558 FAM72CH0Y354 149 aa24.49■■□□□ 1.51
SHMT1-206ENST00000579558 FTLP02792 175 aaPredicted RBP24.49■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms