RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 SLC1A5Q15758 541 aa11.06□□□□□ -0.64
CLK3-226ENST00000569406 TMEM26Q6ZUK4 368 aa11.06□□□□□ -0.64
CLK3-226ENST00000569406 TRMT10CQ7L0Y3 403 aaKnown RBP11.06□□□□□ -0.64
CLK3-226ENST00000569406 TMEM174Q8WUU8 243 aa11.06□□□□□ -0.64
CLK3-226ENST00000569406 RASSF5Q8WWW0 418 aa11.06□□□□□ -0.64
CLK3-226ENST00000569406 C7orf26Q96N11 449 aa11.06□□□□□ -0.64
CLK3-226ENST00000569406 BTBD2Q9BX70 525 aa11.06□□□□□ -0.64
CLK3-226ENST00000569406 WDR11Q9BZH6 1224 aa11.06□□□□□ -0.64
CLK3-226ENST00000569406 RPF2Q9H7B2 306 aaKnown RBP11.06□□□□□ -0.64
CLK3-226ENST00000569406 CXorf21Q9HAI6 301 aa11.06□□□□□ -0.64
CLK3-226ENST00000569406 PKD2L1Q9P0L9 805 aa11.06□□□□□ -0.64
CLK3-226ENST00000569406 H3BMQ9 156 aa11.06□□□□□ -0.64
CLK3-226ENST00000569406 ERVH48-1M5A8F1 160 aa11.06□□□□□ -0.64
CLK3-226ENST00000569406 EIF3DO15371 548 aaKnown RBP eCLIP11.06□□□□□ -0.64
CLK3-226ENST00000569406 ITGALP20701 1170 aa11.06□□□□□ -0.64
CLK3-226ENST00000569406 ATP6V0D1P61421 351 aa11.06□□□□□ -0.64
CLK3-226ENST00000569406 CDKL1Q00532 357 aa11.06□□□□□ -0.64
CLK3-226ENST00000569406 PLA2G4EQ3MJ16 856 aa11.06□□□□□ -0.64
CLK3-226ENST00000569406 EEPD1Q7L9B9 569 aa11.06□□□□□ -0.64
CLK3-226ENST00000569406 SPATA18Q8TC71 538 aa11.06□□□□□ -0.64
CLK3-226ENST00000569406 PIK3R3Q92569 461 aa11.06□□□□□ -0.64
CLK3-226ENST00000569406 OXNAD1Q96HP4 312 aaPredicted RBP11.06□□□□□ -0.64
CLK3-226ENST00000569406 COG8Q96MW5 612 aa11.06□□□□□ -0.64
CLK3-226ENST00000569406 RBM14Q96PK6 669 aaKnown RBP11.06□□□□□ -0.64
CLK3-226ENST00000569406 RIC8BQ9NVN3 520 aa11.06□□□□□ -0.64
CLK3-226ENST00000569406 CHORDC1Q9UHD1 332 aaPredicted RBP11.06□□□□□ -0.64
CLK3-226ENST00000569406 XPO7Q9UIA9 1087 aaKnown RBP11.06□□□□□ -0.64
CLK3-226ENST00000569406 SLC27A5Q9Y2P5 690 aa11.06□□□□□ -0.64
CLK3-226ENST00000569406 DOCK1Q14185 1865 aa11.05□□□□□ -0.64
CLK3-226ENST00000569406 SLC9A3R1O14745 358 aaPredicted RBP11.05□□□□□ -0.64
CLK3-226ENST00000569406 SLC16A3O15427 465 aaKnown RBP11.05□□□□□ -0.64
CLK3-226ENST00000569406 KCNH1O95259 989 aa11.05□□□□□ -0.64
CLK3-226ENST00000569406 MUTP22033 750 aa11.05□□□□□ -0.64
CLK3-226ENST00000569406 TBXAS1P24557 533 aaPredicted RBP11.05□□□□□ -0.64
CLK3-226ENST00000569406 CLCQ05315 142 aa11.05□□□□□ -0.64
CLK3-226ENST00000569406 SP140Q13342 867 aa11.05□□□□□ -0.64
CLK3-226ENST00000569406 UGT3A1Q6NUS8 523 aa11.05□□□□□ -0.64
CLK3-226ENST00000569406 UNC5AQ6ZN44 842 aa11.05□□□□□ -0.64
CLK3-226ENST00000569406 PRPF39Q86UA1 669 aaKnown RBP11.05□□□□□ -0.64
CLK3-226ENST00000569406 ZC3H7AQ8IWR0 971 aaKnown RBP11.05□□□□□ -0.64
CLK3-226ENST00000569406 TPH2Q8IWU9 490 aa11.05□□□□□ -0.64
CLK3-226ENST00000569406 TTLL6Q8N841 843 aa11.05□□□□□ -0.64
CLK3-226ENST00000569406 RMND5BQ96G75 393 aaPredicted RBP11.05□□□□□ -0.64
CLK3-226ENST00000569406 TTC25Q96NG3 672 aa11.05□□□□□ -0.64
CLK3-226ENST00000569406 PIP5K1AQ99755 562 aa11.05□□□□□ -0.64
CLK3-226ENST00000569406 TRABDQ9H4I3 376 aa11.05□□□□□ -0.64
CLK3-226ENST00000569406 RPRD1BQ9NQG5 326 aaKnown RBP11.05□□□□□ -0.64
CLK3-226ENST00000569406 NAGPAQ9UK23 515 aa11.05□□□□□ -0.64
CLK3-226ENST00000569406 AMFRQ9UKV5 643 aa11.05□□□□□ -0.64
CLK3-226ENST00000569406 TMEM5Q9Y2B1 443 aa11.05□□□□□ -0.64
CLK3-226ENST00000569406 MYRFQ9Y2G1 1151 aa11.05□□□□□ -0.64
CLK3-226ENST00000569406 SERPINI2O75830 405 aa11.05□□□□□ -0.64
CLK3-226ENST00000569406 CCNKO75909 580 aa11.05□□□□□ -0.64
CLK3-226ENST00000569406 H6PDO95479 791 aa11.05□□□□□ -0.64
CLK3-226ENST00000569406 BCL10O95999 233 aa11.05□□□□□ -0.64
CLK3-226ENST00000569406 FGFR1P11362 822 aa11.05□□□□□ -0.64
CLK3-226ENST00000569406 CYP2J2P51589 502 aa11.05□□□□□ -0.64
CLK3-226ENST00000569406 ARL4CP56559 192 aa11.05□□□□□ -0.64
CLK3-226ENST00000569406 CCNIQ14094 377 aa11.05□□□□□ -0.64
CLK3-226ENST00000569406 FAM209BQ5JX69 171 aa11.05□□□□□ -0.64
CLK3-226ENST00000569406 LNX1Q8TBB1 728 aaPredicted RBP11.05□□□□□ -0.64
CLK3-226ENST00000569406 LRRC20Q8TCA0 184 aa11.05□□□□□ -0.64
CLK3-226ENST00000569406 C17orf62Q9BQA9 187 aa11.05□□□□□ -0.64
CLK3-226ENST00000569406 NAA50Q9GZZ1 169 aaKnown RBP11.05□□□□□ -0.64
CLK3-226ENST00000569406 FAM8A1Q9UBU6 413 aa11.05□□□□□ -0.64
CLK3-226ENST00000569406 TCEAL9Q9UHQ7 104 aa11.05□□□□□ -0.64
CLK3-226ENST00000569406 MAN2B2Q9Y2E5 1009 aa11.05□□□□□ -0.64
CLK3-226ENST00000569406 MTO1Q9Y2Z2 717 aaKnown RBP11.05□□□□□ -0.64
CLK3-226ENST00000569406 GTPBP10A4D1E9 387 aaKnown RBP11.05□□□□□ -0.64
CLK3-226ENST00000569406 TMEM150BA6NC51 233 aa11.05□□□□□ -0.64
CLK3-226ENST00000569406 ANKRD63C9JTQ0 380 aa11.05□□□□□ -0.64
CLK3-226ENST00000569406 YKT6O15498 198 aa11.05□□□□□ -0.64
CLK3-226ENST00000569406 OR7A10O76100 309 aa11.05□□□□□ -0.64
CLK3-226ENST00000569406 CALB1P05937 261 aa11.05□□□□□ -0.64
CLK3-226ENST00000569406 TNFAIP3P21580 790 aa11.05□□□□□ -0.64
CLK3-226ENST00000569406 L1CAMP32004 1257 aa11.05□□□□□ -0.64
CLK3-226ENST00000569406 ACOT2P49753 483 aa11.05□□□□□ -0.64
CLK3-226ENST00000569406 GPLD1P80108 840 aa11.05□□□□□ -0.64
CLK3-226ENST00000569406 C19orf57Q0VDD7 668 aa11.05□□□□□ -0.64
CLK3-226ENST00000569406 DHX34Q14147 1143 aaKnown RBP11.05□□□□□ -0.64
CLK3-226ENST00000569406 DLGAP5Q15398 846 aa11.05□□□□□ -0.64
CLK3-226ENST00000569406 NRF1Q16656 503 aa11.05□□□□□ -0.64
CLK3-226ENST00000569406 UGCGQ16739 394 aa11.05□□□□□ -0.64
CLK3-226ENST00000569406 CYP4F22Q6NT55 531 aa11.05□□□□□ -0.64
CLK3-226ENST00000569406 TP53I13Q8NBR0 393 aaPredicted RBP11.05□□□□□ -0.64
CLK3-226ENST00000569406 JPH3Q8WXH2 748 aaPredicted RBP11.05□□□□□ -0.64
CLK3-226ENST00000569406 ZNF560Q96MR9 790 aa11.05□□□□□ -0.64
CLK3-226ENST00000569406 OR2B2Q9GZK3 357 aa11.05□□□□□ -0.64
CLK3-226ENST00000569406 C17orf75Q9HAS0 396 aa11.05□□□□□ -0.64
CLK3-226ENST00000569406 ARHGEF4Q9NR80 690 aa11.05□□□□□ -0.64
CLK3-226ENST00000569406 AP4S1Q9Y587 144 aa11.05□□□□□ -0.64
CLK3-226ENST00000569406 MAU2Q9Y6X3 613 aa11.05□□□□□ -0.64
CLK3-226ENST00000569406 ADGRA3Q8IWK6 1321 aa11.04□□□□□ -0.64
CLK3-226ENST00000569406 DCAF8L1A6NGE4 600 aa11.04□□□□□ -0.64
CLK3-226ENST00000569406 ICAM1P05362 532 aa11.04□□□□□ -0.64
CLK3-226ENST00000569406 HSD17B2P37059 387 aa11.04□□□□□ -0.64
CLK3-226ENST00000569406 HTR2BP41595 481 aa11.04□□□□□ -0.64
CLK3-226ENST00000569406 POU6F1Q14863 301 aa11.04□□□□□ -0.64
CLK3-226ENST00000569406 SLFN11Q7Z7L1 901 aa11.04□□□□□ -0.64
CLK3-226ENST00000569406 SLC22A16Q86VW1 577 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms