RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 AASDHPPTQ9NRN7 309 aa19.27■□□□□ 0.68
CLN3-218ENST00000565688 VANGL2Q9ULK5 521 aa19.27■□□□□ 0.68
CLN3-218ENST00000565688 A0A1B0GTQ1 180 aa19.26■□□□□ 0.67
CLN3-218ENST00000565688 M0QYT0 321 aa19.26■□□□□ 0.67
CLN3-218ENST00000565688 YKT6O15498 198 aa19.26■□□□□ 0.67
CLN3-218ENST00000565688 SLC7A4O43246 635 aa19.26■□□□□ 0.67
CLN3-218ENST00000565688 ATP9BO43861 1147 aa19.26■□□□□ 0.67
CLN3-218ENST00000565688 PAGE1O75459 146 aa19.26■□□□□ 0.67
CLN3-218ENST00000565688 NUDT1P36639 197 aa19.26■□□□□ 0.67
CLN3-218ENST00000565688 C5orf22Q49AR2 442 aa19.26■□□□□ 0.67
CLN3-218ENST00000565688 PTPN20Q4JDL3 420 aa19.26■□□□□ 0.67
CLN3-218ENST00000565688 VWA3BQ502W6 1294 aa19.26■□□□□ 0.67
CLN3-218ENST00000565688 GALNT15Q8N3T1 639 aa19.26■□□□□ 0.67
CLN3-218ENST00000565688 ALG14Q96F25 216 aa19.26■□□□□ 0.67
CLN3-218ENST00000565688 ELF4Q99607 663 aaPredicted RBP19.26■□□□□ 0.67
CLN3-218ENST00000565688 EBF2Q9HAK2 575 aa19.26■□□□□ 0.67
CLN3-218ENST00000565688 VPS28Q9UK41 221 aa19.26■□□□□ 0.67
CLN3-218ENST00000565688 AJAP1Q9UKB5 411 aaPredicted RBP19.26■□□□□ 0.67
CLN3-218ENST00000565688 STAP1Q9ULZ2 295 aa19.26■□□□□ 0.67
CLN3-218ENST00000565688 PAXBP1Q9Y5B6 917 aa19.26■□□□□ 0.67
CLN3-218ENST00000565688 HS3ST4Q9Y661 456 aa19.26■□□□□ 0.67
CLN3-218ENST00000565688 TMEM131Q92545 1883 aa19.25■□□□□ 0.67
CLN3-218ENST00000565688 TBC1D3DA0A087WVF3 549 aa19.25■□□□□ 0.67
CLN3-218ENST00000565688 TBC1D3IA0A087WXS9 549 aa19.25■□□□□ 0.67
CLN3-218ENST00000565688 TBC1D3EA0A087X179 549 aa19.25■□□□□ 0.67
CLN3-218ENST00000565688 TBC1D3KA0A087X1G2 549 aa19.25■□□□□ 0.67
CLN3-218ENST00000565688 TBC1D3FA6NER0 549 aaPredicted RBP19.25■□□□□ 0.67
CLN3-218ENST00000565688 TBC1D3LB9A6J9 549 aa19.25■□□□□ 0.67
CLN3-218ENST00000565688 ALOX15BO15296 676 aa19.25■□□□□ 0.67
CLN3-218ENST00000565688 LATO43561 262 aa19.25■□□□□ 0.67
CLN3-218ENST00000565688 TBC1D3HP0C7X1 549 aa19.25■□□□□ 0.67
CLN3-218ENST00000565688 VAV1P15498 845 aa19.25■□□□□ 0.67
CLN3-218ENST00000565688 DRD3P35462 400 aa19.25■□□□□ 0.67
CLN3-218ENST00000565688 CDH4P55283 916 aa19.25■□□□□ 0.67
CLN3-218ENST00000565688 ACCSLQ4AC99 568 aa19.25■□□□□ 0.67
CLN3-218ENST00000565688 BRMS1LQ5PSV4 323 aa19.25■□□□□ 0.67
CLN3-218ENST00000565688 ACBD5Q5T8D3 534 aaPredicted RBP19.25■□□□□ 0.67
CLN3-218ENST00000565688 TBC1D3GQ6DHY5 549 aa19.25■□□□□ 0.67
CLN3-218ENST00000565688 TBC1D3CQ6IPX1 549 aa19.25■□□□□ 0.67
CLN3-218ENST00000565688 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP19.25■□□□□ 0.67
CLN3-218ENST00000565688 TBC1D3Q8IZP1 549 aaPredicted RBP19.25■□□□□ 0.67
CLN3-218ENST00000565688 TMEM35BQ8NCS4 154 aa19.25■□□□□ 0.67
CLN3-218ENST00000565688 FAM131CQ96AQ9 280 aa19.25■□□□□ 0.67
CLN3-218ENST00000565688 SERAC1Q96JX3 654 aa19.25■□□□□ 0.67
CLN3-218ENST00000565688 NPY6RQ99463 290 aa19.25■□□□□ 0.67
CLN3-218ENST00000565688 TUBGCP2Q9BSJ2 902 aa19.25■□□□□ 0.67
CLN3-218ENST00000565688 PDCL3Q9H2J4 239 aa19.25■□□□□ 0.67
CLN3-218ENST00000565688 CCDC86Q9H6F5 360 aaKnown RBP19.25■□□□□ 0.67
CLN3-218ENST00000565688 WDCPQ9H6R7 721 aa19.25■□□□□ 0.67
CLN3-218ENST00000565688 GDF3Q9NR23 364 aa19.25■□□□□ 0.67
CLN3-218ENST00000565688 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP19.25■□□□□ 0.67
CLN3-218ENST00000565688 FTSJ1Q9UET6 329 aa19.25■□□□□ 0.67
CLN3-218ENST00000565688 DACH1Q9UI36 760 aa19.25■□□□□ 0.67
CLN3-218ENST00000565688 TBC1D30Q9Y2I9 924 aa19.25■□□□□ 0.67
CLN3-218ENST00000565688 PLXNA2O75051 1894 aa19.24■□□□□ 0.67
CLN3-218ENST00000565688 NYNRINQ9P2P1 1898 aaKnown RBP19.24■□□□□ 0.67
CLN3-218ENST00000565688 GOLGA8CPA6NN73 597 aa19.24■□□□□ 0.67
CLN3-218ENST00000565688 C1QTNF3-AMACRE9PGA6 284 aa19.24■□□□□ 0.67
CLN3-218ENST00000565688 F9P00740 461 aa19.24■□□□□ 0.67
CLN3-218ENST00000565688 WNT1P04628 370 aa19.24■□□□□ 0.67
CLN3-218ENST00000565688 ERCC5P28715 1186 aaPredicted RBP19.24■□□□□ 0.67
CLN3-218ENST00000565688 SCNN1AP37088 669 aa19.24■□□□□ 0.67
CLN3-218ENST00000565688 ARRB1P49407 418 aaPredicted RBP19.24■□□□□ 0.67
CLN3-218ENST00000565688 CXCR3P49682 368 aa19.24■□□□□ 0.67
CLN3-218ENST00000565688 IL9RQ01113 521 aa19.24■□□□□ 0.67
CLN3-218ENST00000565688 DLG2Q15700 870 aa19.24■□□□□ 0.67
CLN3-218ENST00000565688 PRPF39Q86UA1 669 aaKnown RBP19.24■□□□□ 0.67
CLN3-218ENST00000565688 PGAP3Q96FM1 320 aaPredicted RBP19.24■□□□□ 0.67
CLN3-218ENST00000565688 SIK2Q9H0K1 926 aa19.24■□□□□ 0.67
CLN3-218ENST00000565688 MUC3BQ9H195 1237 aa19.24■□□□□ 0.67
CLN3-218ENST00000565688 CLSTN2Q9H4D0 955 aa19.24■□□□□ 0.67
CLN3-218ENST00000565688 PLCB1Q9NQ66 1216 aa19.24■□□□□ 0.67
CLN3-218ENST00000565688 PIGVQ9NUD9 493 aa19.24■□□□□ 0.67
CLN3-218ENST00000565688 ARHGEF38Q9NXL2 777 aa19.24■□□□□ 0.67
CLN3-218ENST00000565688 CHMP5Q9NZZ3 219 aa19.24■□□□□ 0.67
CLN3-218ENST00000565688 RALYQ9UKM9 306 aaKnown RBP19.24■□□□□ 0.67
CLN3-218ENST00000565688 OR51B4Q9Y5P0 310 aa19.24■□□□□ 0.67
CLN3-218ENST00000565688 A0A1W2PR77 199 aa19.23■□□□□ 0.67
CLN3-218ENST00000565688 TLR4O00206 839 aa19.23■□□□□ 0.67
CLN3-218ENST00000565688 TAF4O00268 1085 aa19.23■□□□□ 0.67
CLN3-218ENST00000565688 MCF2LO15068 1137 aa19.23■□□□□ 0.67
CLN3-218ENST00000565688 PNMA6AP0CW24 399 aaPredicted RBP19.23■□□□□ 0.67
CLN3-218ENST00000565688 ZNF18P17022 549 aa19.23■□□□□ 0.67
CLN3-218ENST00000565688 CDH5P33151 784 aaPredicted RBP19.23■□□□□ 0.67
CLN3-218ENST00000565688 NUMBP49757 651 aa19.23■□□□□ 0.67
CLN3-218ENST00000565688 IRAK1P51617 712 aa19.23■□□□□ 0.67
CLN3-218ENST00000565688 KRT83P78385 493 aa19.23■□□□□ 0.67
CLN3-218ENST00000565688 RAPGEF1Q13905 1077 aa19.23■□□□□ 0.67
CLN3-218ENST00000565688 NAPEPLDQ6IQ20 393 aa19.23■□□□□ 0.67
CLN3-218ENST00000565688 OXR1Q8N573 874 aa19.23■□□□□ 0.67
CLN3-218ENST00000565688 SH2D3CQ8N5H7 860 aa19.23■□□□□ 0.67
CLN3-218ENST00000565688 OR52K2Q8NGK3 314 aa19.23■□□□□ 0.67
CLN3-218ENST00000565688 NT5C3BQ969T7 300 aa19.23■□□□□ 0.67
CLN3-218ENST00000565688 C18orf8Q96DM3 657 aa19.23■□□□□ 0.67
CLN3-218ENST00000565688 C2orf49Q9BVC5 232 aaPredicted RBP19.23■□□□□ 0.67
CLN3-218ENST00000565688 TKTL2Q9H0I9 626 aa19.23■□□□□ 0.67
CLN3-218ENST00000565688 ERVMER34-1Q9H9K5 563 aa19.23■□□□□ 0.67
CLN3-218ENST00000565688 PPM1HQ9ULR3 514 aa19.23■□□□□ 0.67
CLN3-218ENST00000565688 DMTF1Q9Y222 760 aa19.23■□□□□ 0.67
CLN3-218ENST00000565688 HS3ST2Q9Y278 367 aa19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms