RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 SLC39A8Q9C0K1 460 aa13.13□□□□□ -0.31
CLK3-214ENST00000564096 ATP13A1Q9HD20 1204 aa13.13□□□□□ -0.31
CLK3-214ENST00000564096 ASIC3Q9UHC3 531 aa13.13□□□□□ -0.31
CLK3-214ENST00000564096 CDH23Q9H251 3354 aa13.12□□□□□ -0.31
CLK3-214ENST00000564096 GRXCR2A6NFK2 248 aa13.12□□□□□ -0.31
CLK3-214ENST00000564096 ZSCAN5CA6NGD5 496 aaPredicted RBP13.12□□□□□ -0.31
CLK3-214ENST00000564096 TTI1O43156 1089 aa13.12□□□□□ -0.31
CLK3-214ENST00000564096 HOXC11O43248 304 aaPredicted RBP13.12□□□□□ -0.31
CLK3-214ENST00000564096 CYP17A1P05093 508 aa13.12□□□□□ -0.31
CLK3-214ENST00000564096 RHOXF2BP0C7M4 288 aa13.12□□□□□ -0.31
CLK3-214ENST00000564096 CCNCP24863 283 aa13.12□□□□□ -0.31
CLK3-214ENST00000564096 RBL1P28749 1068 aa13.12□□□□□ -0.31
CLK3-214ENST00000564096 KCNJ1P48048 391 aa13.12□□□□□ -0.31
CLK3-214ENST00000564096 PAPOLAP51003 745 aaKnown RBP13.12□□□□□ -0.31
CLK3-214ENST00000564096 GEMIN4P57678 1058 aaKnown RBP13.12□□□□□ -0.31
CLK3-214ENST00000564096 SLC10A2Q12908 348 aaPredicted RBP13.12□□□□□ -0.31
CLK3-214ENST00000564096 SLC12A1Q13621 1099 aa13.12□□□□□ -0.31
CLK3-214ENST00000564096 EML3Q32P44 896 aa13.12□□□□□ -0.31
CLK3-214ENST00000564096 LEXMQ3ZCV2 418 aa13.12□□□□□ -0.31
CLK3-214ENST00000564096 LY6G5CQ5SRR4 150 aa13.12□□□□□ -0.31
CLK3-214ENST00000564096 ARTNQ5T4W7 220 aa13.12□□□□□ -0.31
CLK3-214ENST00000564096 FYB2Q5VWT5 728 aa13.12□□□□□ -0.31
CLK3-214ENST00000564096 RNF43Q68DV7 783 aa13.12□□□□□ -0.31
CLK3-214ENST00000564096 IL31Q6EBC2 164 aa13.12□□□□□ -0.31
CLK3-214ENST00000564096 ITPRIPL1Q6GPH6 555 aa13.12□□□□□ -0.31
CLK3-214ENST00000564096 TANGO2Q6ICL3 276 aa13.12□□□□□ -0.31
CLK3-214ENST00000564096 CXorf57Q6NSI4 855 aaKnown RBP13.12□□□□□ -0.31
CLK3-214ENST00000564096 VITQ6UXI7 678 aa13.12□□□□□ -0.31
CLK3-214ENST00000564096 PLCD3Q8N3E9 789 aa13.12□□□□□ -0.31
CLK3-214ENST00000564096 BBS5Q8N3I7 341 aa13.12□□□□□ -0.31
CLK3-214ENST00000564096 FAM71DQ8N9W8 422 aa13.12□□□□□ -0.31
CLK3-214ENST00000564096 DCAF4L2Q8NA75 395 aa13.12□□□□□ -0.31
CLK3-214ENST00000564096 BBOF1Q8ND07 529 aa13.12□□□□□ -0.31
CLK3-214ENST00000564096 FATE1Q969F0 183 aa13.12□□□□□ -0.31
CLK3-214ENST00000564096 RTP4Q96DX8 246 aa13.12□□□□□ -0.31
CLK3-214ENST00000564096 HMCESQ96FZ2 354 aa13.12□□□□□ -0.31
CLK3-214ENST00000564096 TSGA13Q96PP4 275 aa13.12□□□□□ -0.31
CLK3-214ENST00000564096 LGMNQ99538 433 aa13.12□□□□□ -0.31
CLK3-214ENST00000564096 KXD1Q9BQD3 176 aa13.12□□□□□ -0.31
CLK3-214ENST00000564096 RHOXF2Q9BQY4 288 aa13.12□□□□□ -0.31
CLK3-214ENST00000564096 LRRC1Q9BTT6 524 aa13.12□□□□□ -0.31
CLK3-214ENST00000564096 C2orf49Q9BVC5 232 aaPredicted RBP13.12□□□□□ -0.31
CLK3-214ENST00000564096 PHF7Q9BWX1 381 aaPredicted RBP13.12□□□□□ -0.31
CLK3-214ENST00000564096 SLC2A11Q9BYW1 496 aa13.12□□□□□ -0.31
CLK3-214ENST00000564096 KLC2Q9H0B6 622 aa13.12□□□□□ -0.31
CLK3-214ENST00000564096 NDFIP2Q9NV92 336 aa13.12□□□□□ -0.31
CLK3-214ENST00000564096 SEPT10Q9P0V9 454 aa13.12□□□□□ -0.31
CLK3-214ENST00000564096 KIAA1522Q9P206 1035 aaPredicted RBP13.12□□□□□ -0.31
CLK3-214ENST00000564096 PAK5Q9P286 719 aa13.12□□□□□ -0.31
CLK3-214ENST00000564096 IPO11Q9UI26 975 aaKnown RBP13.12□□□□□ -0.31
CLK3-214ENST00000564096 VPS28Q9UK41 221 aa13.12□□□□□ -0.31
CLK3-214ENST00000564096 RNF103O00237 685 aa13.11□□□□□ -0.31
CLK3-214ENST00000564096 DLL1O00548 723 aa13.11□□□□□ -0.31
CLK3-214ENST00000564096 CHADO15335 359 aa13.11□□□□□ -0.31
CLK3-214ENST00000564096 OPHN1O60890 802 aa13.11□□□□□ -0.31
CLK3-214ENST00000564096 KRT14P02533 472 aa13.11□□□□□ -0.31
CLK3-214ENST00000564096 TYRP14679 529 aa13.11□□□□□ -0.31
CLK3-214ENST00000564096 IL10RBQ08334 325 aa13.11□□□□□ -0.31
CLK3-214ENST00000564096 CALCOCO2Q13137 446 aa13.11□□□□□ -0.31
CLK3-214ENST00000564096 SERINC3Q13530 473 aa13.11□□□□□ -0.31
CLK3-214ENST00000564096 HTR4Q13639 388 aa13.11□□□□□ -0.31
CLK3-214ENST00000564096 DHCR24Q15392 516 aa13.11□□□□□ -0.31
CLK3-214ENST00000564096 PREPLQ4J6C6 727 aaPredicted RBP13.11□□□□□ -0.31
CLK3-214ENST00000564096 TMCO4Q5TGY1 634 aa13.11□□□□□ -0.31
CLK3-214ENST00000564096 RNF219Q5W0B1 726 aaPredicted RBP13.11□□□□□ -0.31
CLK3-214ENST00000564096 POTEHQ6S545 545 aa13.11□□□□□ -0.31
CLK3-214ENST00000564096 ARHGEF18Q6ZSZ5 1173 aa13.11□□□□□ -0.31
CLK3-214ENST00000564096 CCDC33Q8N5R6 958 aa13.11□□□□□ -0.31
CLK3-214ENST00000564096 GPR161Q8N6U8 529 aaKnown RBP13.11□□□□□ -0.31
CLK3-214ENST00000564096 FIBINQ8TAL6 211 aa13.11□□□□□ -0.31
CLK3-214ENST00000564096 ARHGEF2Q92974 986 aaKnown RBP13.11□□□□□ -0.31
CLK3-214ENST00000564096 NXPE3Q969Y0 559 aa13.11□□□□□ -0.31
CLK3-214ENST00000564096 LRRC45Q96CN5 670 aa13.11□□□□□ -0.31
CLK3-214ENST00000564096 P2RY11Q96G91 374 aa13.11□□□□□ -0.31
CLK3-214ENST00000564096 ZNF599Q96NL3 588 aa13.11□□□□□ -0.31
CLK3-214ENST00000564096 PPP1R2P1Q96PQ5 205 aa13.11□□□□□ -0.31
CLK3-214ENST00000564096 TRIM51Q9BSJ1 452 aa13.11□□□□□ -0.31
CLK3-214ENST00000564096 TRMT61BQ9BVS5 477 aaKnown RBP13.11□□□□□ -0.31
CLK3-214ENST00000564096 KLHL8Q9P2G9 620 aaPredicted RBP13.11□□□□□ -0.31
CLK3-214ENST00000564096 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.11□□□□□ -0.31
CLK3-214ENST00000564096 NUMBLQ9Y6R0 609 aa13.11□□□□□ -0.31
CLK3-214ENST00000564096 V9GYY5 206 aaPredicted RBP13.11□□□□□ -0.31
CLK3-214ENST00000564096 A0A0A0MRY4 1105 aa13.1□□□□□ -0.31
CLK3-214ENST00000564096 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.1□□□□□ -0.31
CLK3-214ENST00000564096 MATN3O15232 486 aa13.1□□□□□ -0.31
CLK3-214ENST00000564096 CACNG3O60359 315 aa13.1□□□□□ -0.31
CLK3-214ENST00000564096 VAV1P15498 845 aa13.1□□□□□ -0.31
CLK3-214ENST00000564096 SP100P23497 879 aaPredicted RBP13.1□□□□□ -0.31
CLK3-214ENST00000564096 CSKP41240 450 aa13.1□□□□□ -0.31
CLK3-214ENST00000564096 PTGIRP43119 386 aa13.1□□□□□ -0.31
CLK3-214ENST00000564096 RENBPP51606 427 aa13.1□□□□□ -0.31
CLK3-214ENST00000564096 CLCN6P51797 869 aa13.1□□□□□ -0.31
CLK3-214ENST00000564096 TERF1P54274 439 aa13.1□□□□□ -0.31
CLK3-214ENST00000564096 IFI35P80217 286 aaPredicted RBP13.1□□□□□ -0.31
CLK3-214ENST00000564096 GUCY2DQ02846 1103 aa13.1□□□□□ -0.31
CLK3-214ENST00000564096 GRM2Q14416 872 aa13.1□□□□□ -0.31
CLK3-214ENST00000564096 DMC1Q14565 340 aa13.1□□□□□ -0.31
CLK3-214ENST00000564096 RFTN1Q14699 578 aaPredicted RBP13.1□□□□□ -0.31
CLK3-214ENST00000564096 SMAD2Q15796 467 aaKnown RBP13.1□□□□□ -0.31
CLK3-214ENST00000564096 TRIM68Q6AZZ1 485 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms