RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 ZNF783Q6ZMS7 281 aa16.99■□□□□ 0.31
VPS4A-202ENST00000562754 KIAA0907Q7Z7F0 614 aaPredicted RBP16.99■□□□□ 0.31
VPS4A-202ENST00000562754 CCDC117Q8IWD4 279 aaPredicted RBP16.99■□□□□ 0.31
VPS4A-202ENST00000562754 APCDD1Q8J025 514 aa16.99■□□□□ 0.31
VPS4A-202ENST00000562754 SLC35B2Q8TB61 432 aa16.99■□□□□ 0.31
VPS4A-202ENST00000562754 MAIP1Q8WWC4 291 aa16.99■□□□□ 0.31
VPS4A-202ENST00000562754 C1orf54Q8WWF1 131 aa16.99■□□□□ 0.31
VPS4A-202ENST00000562754 XPO6Q96QU8 1125 aaKnown RBP16.99■□□□□ 0.31
VPS4A-202ENST00000562754 NAP1L3Q99457 506 aaPredicted RBP16.99■□□□□ 0.31
VPS4A-202ENST00000562754 MAGEH1Q9H213 219 aa16.99■□□□□ 0.31
VPS4A-202ENST00000562754 HEBP1Q9NRV9 189 aa16.99■□□□□ 0.31
VPS4A-202ENST00000562754 KIAA1522Q9P206 1035 aaPredicted RBP16.99■□□□□ 0.31
VPS4A-202ENST00000562754 RNF14Q9UBS8 474 aa16.99■□□□□ 0.31
VPS4A-202ENST00000562754 GGA2Q9UJY4 613 aa16.99■□□□□ 0.31
VPS4A-202ENST00000562754 DUSP12Q9UNI6 340 aa16.99■□□□□ 0.31
VPS4A-202ENST00000562754 GLDCP23378 1020 aa16.98■□□□□ 0.31
VPS4A-202ENST00000562754 CTHP32929 405 aa16.98■□□□□ 0.31
VPS4A-202ENST00000562754 GARSP41250 739 aaKnown RBP16.98■□□□□ 0.31
VPS4A-202ENST00000562754 DGKGP49619 791 aa16.98■□□□□ 0.31
VPS4A-202ENST00000562754 PAPOLAP51003 745 aaKnown RBP16.98■□□□□ 0.31
VPS4A-202ENST00000562754 SERINC3Q13530 473 aa16.98■□□□□ 0.31
VPS4A-202ENST00000562754 GEN1Q17RS7 908 aa16.98■□□□□ 0.31
VPS4A-202ENST00000562754 PLEKHG6Q3KR16 790 aa16.98■□□□□ 0.31
VPS4A-202ENST00000562754 GRAMD4Q6IC98 578 aa16.98■□□□□ 0.31
VPS4A-202ENST00000562754 B4GALNT4Q76KP1 1039 aa16.98■□□□□ 0.31
VPS4A-202ENST00000562754 ZNF572Q7Z3I7 529 aaPredicted RBP16.98■□□□□ 0.31
VPS4A-202ENST00000562754 ZNF557Q8N988 423 aaPredicted RBP16.98■□□□□ 0.31
VPS4A-202ENST00000562754 TTC13Q8NBP0 860 aa16.98■□□□□ 0.31
VPS4A-202ENST00000562754 QKIQ96PU8 341 aaKnown RBP eCLIP16.98■□□□□ 0.31
VPS4A-202ENST00000562754 FEM1AQ9BSK4 669 aa16.98■□□□□ 0.31
VPS4A-202ENST00000562754 ACE2Q9BYF1 805 aaPredicted RBP16.98■□□□□ 0.31
VPS4A-202ENST00000562754 MUC3BQ9H195 1237 aa16.98■□□□□ 0.31
VPS4A-202ENST00000562754 RRAGDQ9NQL2 400 aaPredicted RBP16.98■□□□□ 0.31
VPS4A-202ENST00000562754 SLC27A6Q9Y2P4 619 aa16.98■□□□□ 0.31
VPS4A-202ENST00000562754 RAD54BQ9Y620 910 aa16.98■□□□□ 0.31
VPS4A-202ENST00000562754 F5P12259 2224 aa16.98■□□□□ 0.31
VPS4A-202ENST00000562754 UNC80Q8N2C7 3258 aa16.97■□□□□ 0.31
VPS4A-202ENST00000562754 MUC22E2RYF6 1773 aaPredicted RBP16.97■□□□□ 0.31
VPS4A-202ENST00000562754 ARHGAP42A6NI28 874 aa16.97■□□□□ 0.31
VPS4A-202ENST00000562754 SPECC1L-ADORA2AF8WAN1 911 aa16.97■□□□□ 0.31
VPS4A-202ENST00000562754 KRIT1O00522 736 aa16.97■□□□□ 0.31
VPS4A-202ENST00000562754 MCF2LO15068 1137 aa16.97■□□□□ 0.31
VPS4A-202ENST00000562754 LIASO43766 372 aa16.97■□□□□ 0.31
VPS4A-202ENST00000562754 SNAP91O60641 907 aa16.97■□□□□ 0.31
VPS4A-202ENST00000562754 ZMPSTE24O75844 475 aa16.97■□□□□ 0.31
VPS4A-202ENST00000562754 VAV1P15498 845 aa16.97■□□□□ 0.31
VPS4A-202ENST00000562754 MX2P20592 715 aa16.97■□□□□ 0.31
VPS4A-202ENST00000562754 EIF2DP41214 584 aaKnown RBP16.97■□□□□ 0.31
VPS4A-202ENST00000562754 PAFAH1B1P43034 410 aa16.97■□□□□ 0.31
VPS4A-202ENST00000562754 PLK1P53350 603 aa16.97■□□□□ 0.31
VPS4A-202ENST00000562754 OXCT1P55809 520 aa16.97■□□□□ 0.31
VPS4A-202ENST00000562754 EIF3EP60228 445 aaKnown RBP16.97■□□□□ 0.31
VPS4A-202ENST00000562754 TUBB2AQ13885 445 aa16.97■□□□□ 0.31
VPS4A-202ENST00000562754 PDK1Q15118 436 aa16.97■□□□□ 0.31
VPS4A-202ENST00000562754 PRKD1Q15139 912 aaPredicted RBP16.97■□□□□ 0.31
VPS4A-202ENST00000562754 CYP1B1Q16678 543 aa16.97■□□□□ 0.31
VPS4A-202ENST00000562754 PITRM1Q5JRX3 1037 aa16.97■□□□□ 0.31
VPS4A-202ENST00000562754 TMEM215Q68D42 235 aa16.97■□□□□ 0.31
VPS4A-202ENST00000562754 TXNDC11Q6PKC3 985 aa16.97■□□□□ 0.31
VPS4A-202ENST00000562754 ADIPOR2Q86V24 386 aa16.97■□□□□ 0.31
VPS4A-202ENST00000562754 ZC3H18Q86VM9 953 aaKnown RBP16.97■□□□□ 0.31
VPS4A-202ENST00000562754 RNF135Q8IUD6 432 aa16.97■□□□□ 0.31
VPS4A-202ENST00000562754 SFTPA1Q8IWL2 248 aa16.97■□□□□ 0.31
VPS4A-202ENST00000562754 ATPAF2Q8N5M1 289 aa16.97■□□□□ 0.31
VPS4A-202ENST00000562754 C12orf50Q8NA57 414 aaPredicted RBP16.97■□□□□ 0.31
VPS4A-202ENST00000562754 DCAF4L2Q8NA75 395 aa16.97■□□□□ 0.31
VPS4A-202ENST00000562754 HDAC11Q96DB2 347 aa16.97■□□□□ 0.31
VPS4A-202ENST00000562754 LGMNQ99538 433 aa16.97■□□□□ 0.31
VPS4A-202ENST00000562754 SPON2Q9BUD6 331 aa16.97■□□□□ 0.31
VPS4A-202ENST00000562754 TUBB2BQ9BVA1 445 aa16.97■□□□□ 0.31
VPS4A-202ENST00000562754 C10orf88Q9H8K7 445 aa16.97■□□□□ 0.31
VPS4A-202ENST00000562754 ATP13A1Q9HD20 1204 aa16.97■□□□□ 0.31
VPS4A-202ENST00000562754 CD320Q9NPF0 282 aa16.97■□□□□ 0.31
VPS4A-202ENST00000562754 DEC1Q9P2X7 70 aa16.97■□□□□ 0.31
VPS4A-202ENST00000562754 VPS28Q9UK41 221 aa16.97■□□□□ 0.31
VPS4A-202ENST00000562754 DNPEPQ9ULA0 475 aa16.97■□□□□ 0.31
VPS4A-202ENST00000562754 SORCS3Q9UPU3 1222 aa16.97■□□□□ 0.31
VPS4A-202ENST00000562754 PIAS3Q9Y6X2 628 aa16.97■□□□□ 0.31
VPS4A-202ENST00000562754 SHISA7A6NL88 538 aa16.96■□□□□ 0.31
VPS4A-202ENST00000562754 MAFKO60675 156 aa16.96■□□□□ 0.31
VPS4A-202ENST00000562754 PHF2O75151 1096 aa16.96■□□□□ 0.31
VPS4A-202ENST00000562754 RBP3P10745 1247 aa16.96■□□□□ 0.31
VPS4A-202ENST00000562754 ETFBP38117 255 aa16.96■□□□□ 0.31
VPS4A-202ENST00000562754 PFKPQ01813 784 aa16.96■□□□□ 0.31
VPS4A-202ENST00000562754 CKAP4Q07065 602 aaKnown RBP16.96■□□□□ 0.31
VPS4A-202ENST00000562754 PPIDQ08752 370 aaKnown RBP16.96■□□□□ 0.31
VPS4A-202ENST00000562754 XRCC4Q13426 336 aa16.96■□□□□ 0.31
VPS4A-202ENST00000562754 SNX1Q13596 522 aa16.96■□□□□ 0.31
VPS4A-202ENST00000562754 SLC12A1Q13621 1099 aa16.96■□□□□ 0.31
VPS4A-202ENST00000562754 OASLQ15646 514 aaKnown RBP16.96■□□□□ 0.31
VPS4A-202ENST00000562754 CCNG2Q16589 344 aa16.96■□□□□ 0.31
VPS4A-202ENST00000562754 IL31Q6EBC2 164 aa16.96■□□□□ 0.31
VPS4A-202ENST00000562754 TTC27Q6P3X3 843 aa16.96■□□□□ 0.31
VPS4A-202ENST00000562754 TERB1Q8NA31 727 aa16.96■□□□□ 0.31
VPS4A-202ENST00000562754 WFIKKN2Q8TEU8 576 aa16.96■□□□□ 0.31
VPS4A-202ENST00000562754 NKD2Q969F2 451 aaPredicted RBP16.96■□□□□ 0.31
VPS4A-202ENST00000562754 NECAB3Q96P71 396 aaPredicted RBP16.96■□□□□ 0.31
VPS4A-202ENST00000562754 FRMD8P1Q9BZ68 369 aaPredicted RBP16.96■□□□□ 0.31
VPS4A-202ENST00000562754 L2HGDHQ9H9P8 463 aa16.96■□□□□ 0.31
VPS4A-202ENST00000562754 PDFQ9HBH1 243 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms