RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 COL11A1P12107 1806 aaPredicted RBP5.57□□□□□ -1.52
VPS13C-209ENST00000560637 hCG_1818297A0A087WSY0 165 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 MEFVO15553 781 aaPredicted RBP5.56□□□□□ -1.52
VPS13C-209ENST00000560637 FAM153BP0C7A2 387 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 CCNB1P14635 433 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 TGM2P21980 687 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 MGAT1P26572 445 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 SOX9P48436 509 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 PGFP49763 221 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 PSEN1P49768 467 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 CREMQ03060 361 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 SLC29A2Q14542 456 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 ASTE1Q2TB18 679 aaPredicted RBP5.56□□□□□ -1.52
VPS13C-209ENST00000560637 FAM153CQ494X1 144 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 ALFQ53S48 1182 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 HABP4Q5JVS0 413 aaKnown RBP5.56□□□□□ -1.52
VPS13C-209ENST00000560637 PAPD7Q5XG87 772 aaKnown RBP5.56□□□□□ -1.52
VPS13C-209ENST00000560637 TPGS2Q68CL5 300 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 FBXL19Q6PCT2 694 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 ADGRD2Q7Z7M1 963 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 ZC3H3Q8IXZ2 948 aaKnown RBP5.56□□□□□ -1.52
VPS13C-209ENST00000560637 CCNYL1Q8N7R7 359 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 MRPL43Q8N983 215 aaKnown RBP5.56□□□□□ -1.52
VPS13C-209ENST00000560637 FBXO36Q8NEA4 188 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 PCDH19Q8TAB3 1148 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 GABPB2Q8TAK5 448 aaPredicted RBP5.56□□□□□ -1.52
VPS13C-209ENST00000560637 ITFG1Q8TB96 612 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 SPPL3Q8TCT6 385 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 PTPRN2Q92932 1015 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 ATP2A3Q93084 1043 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 HMCESQ96FZ2 354 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 P2RY11Q96G91 374 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 PEBP4Q96S96 227 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 ETNK1Q9HBU6 452 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 FAM153AQ9UHL3 310 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 CRLS1Q9UJA2 301 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 TTC3P53804 2025 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 CACNA1EQ15878 2313 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 A0A0D9SEW6 157 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 APOC4-APOC2K7ER74 178 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 APOC2P02655 101 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 ATP5BP06576 529 aaKnown RBP5.56□□□□□ -1.52
VPS13C-209ENST00000560637 EZRP15311 586 aaKnown RBP5.56□□□□□ -1.52
VPS13C-209ENST00000560637 CHRM3P20309 590 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 CHRNA4P43681 627 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 RPL21P46778 160 aaKnown RBP5.56□□□□□ -1.52
VPS13C-209ENST00000560637 DSC2Q02487 901 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 DHX34Q14147 1143 aaKnown RBP5.56□□□□□ -1.52
VPS13C-209ENST00000560637 DPYSL3Q14195 570 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 NOMO1Q15155 1222 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 THEMIS2Q5TEJ8 643 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 NXNQ6DKJ4 435 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 FAM47EQ6ZV65 393 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 DET1Q7L5Y6 550 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 TAOK1Q7L7X3 1001 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 DEFB123Q8N688 67 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 SHCBP1LQ9BZQ2 653 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 ZCWPW1Q9H0M4 648 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 KIAA1217Q5T5P2 1943 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 A0A0U1RQS6 177 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 J3KR12 359 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 NDUFS3O75489 264 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 OAZ2O95190 189 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 VAPBO95292 243 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 TRIM16O95361 564 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 TYK2P29597 1187 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 MAGEA4P43358 317 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 GLRBP48167 497 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 STK19P49842 368 aaPredicted RBP5.56□□□□□ -1.52
VPS13C-209ENST00000560637 RENBPP51606 427 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 GDF10P55107 478 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 MXRA7P84157 204 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 BCL2L1Q07817 233 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 DSC1Q08554 894 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 HSP90AA5PQ58FG0 334 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 ANKRD20A2Q5SQ80 823 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 ARMC12Q5T9G4 340 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 ANKRD20A1Q5TYW2 823 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 ANKRD20A3Q5VUR7 823 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 ARHGAP36Q6ZRI8 547 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 PAQR9Q6ZVX9 377 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 CHST9Q7L1S5 443 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 KATNAL2Q8IYT4 538 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 PLD5Q8N7P1 536 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 TSEN2Q8NCE0 465 aaKnown RBP5.56□□□□□ -1.52
VPS13C-209ENST00000560637 CCHCR1Q8TD31 782 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 RIPOR3Q96MK2 946 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 SMC6Q96SB8 1091 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 CDK5RAP1Q96SZ6 601 aaKnown RBP5.56□□□□□ -1.52
VPS13C-209ENST00000560637 EGFL8Q99944 293 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 SEMA4AQ9H3S1 761 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 RRN3Q9NYV6 651 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 SLC39A10Q9ULF5 831 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 DOLKQ9UPQ8 538 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 YBX2Q9Y2T7 364 aaKnown RBP5.56□□□□□ -1.52
VPS13C-209ENST00000560637 HS3ST4Q9Y661 456 aa5.56□□□□□ -1.52
VPS13C-209ENST00000560637 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP5.55□□□□□ -1.52
VPS13C-209ENST00000560637 CCDC151A5D8V7 595 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 ZNF840PA6NDX5 716 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 NCF1BA6NI72 391 aaPredicted RBP5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms