RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 MAVSQ7Z434 540 aa6.64□□□□□ -1.35
RTF1-204ENST00000558117 DTX2Q86UW9 622 aa6.64□□□□□ -1.35
RTF1-204ENST00000558117 KRT78Q8N1N4 520 aa6.64□□□□□ -1.35
RTF1-204ENST00000558117 ATG4AQ8WYN0 398 aa6.64□□□□□ -1.35
RTF1-204ENST00000558117 SUSD6Q92537 303 aa6.64□□□□□ -1.35
RTF1-204ENST00000558117 SPSB4Q96A44 273 aa6.64□□□□□ -1.35
RTF1-204ENST00000558117 C12orf42Q96LP6 360 aa6.64□□□□□ -1.35
RTF1-204ENST00000558117 STK31Q9BXU1 1019 aa6.64□□□□□ -1.35
RTF1-204ENST00000558117 SEZ6LQ9BYH1 1024 aa6.64□□□□□ -1.35
RTF1-204ENST00000558117 KLK15Q9H2R5 256 aa6.64□□□□□ -1.35
RTF1-204ENST00000558117 MFSD1Q9H3U5 465 aa6.64□□□□□ -1.35
RTF1-204ENST00000558117 CPNE5Q9HCH3 593 aa6.64□□□□□ -1.35
RTF1-204ENST00000558117 ASB6Q9NWX5 421 aa6.64□□□□□ -1.35
RTF1-204ENST00000558117 ZSCAN32Q9NX65 697 aa6.64□□□□□ -1.35
RTF1-204ENST00000558117 CORO2BQ9UQ03 480 aa6.64□□□□□ -1.35
RTF1-204ENST00000558117 ENTPD2Q9Y5L3 495 aa6.64□□□□□ -1.35
RTF1-204ENST00000558117 TMEM8BA6NDV4 472 aa6.63□□□□□ -1.35
RTF1-204ENST00000558117 MBD3L4A6NDZ8 208 aaPredicted RBP6.63□□□□□ -1.35
RTF1-204ENST00000558117 MBD3L3A6NE82 208 aaPredicted RBP6.63□□□□□ -1.35
RTF1-204ENST00000558117 TLR5O60602 858 aa6.63□□□□□ -1.35
RTF1-204ENST00000558117 FRAT2O75474 233 aaPredicted RBP6.63□□□□□ -1.35
RTF1-204ENST00000558117 C1RP00736 705 aa6.63□□□□□ -1.35
RTF1-204ENST00000558117 EBLN1P0CF75 366 aa6.63□□□□□ -1.35
RTF1-204ENST00000558117 SP9P0CG40 484 aa6.63□□□□□ -1.35
RTF1-204ENST00000558117 GPD1P21695 349 aa6.63□□□□□ -1.35
RTF1-204ENST00000558117 TBX4P57082 545 aa6.63□□□□□ -1.35
RTF1-204ENST00000558117 GPNMBQ14956 572 aa6.63□□□□□ -1.35
RTF1-204ENST00000558117 SHROOM1Q2M3G4 852 aaPredicted RBP6.63□□□□□ -1.35
RTF1-204ENST00000558117 PTCHD3Q3KNS1 767 aa6.63□□□□□ -1.35
RTF1-204ENST00000558117 KCTD20Q7Z5Y7 419 aa6.63□□□□□ -1.35
RTF1-204ENST00000558117 BPIFB1Q8TDL5 484 aa6.63□□□□□ -1.35
RTF1-204ENST00000558117 PPP2R3CQ969Q6 453 aa6.63□□□□□ -1.35
RTF1-204ENST00000558117 HAPLN3Q96S86 360 aa6.63□□□□□ -1.35
RTF1-204ENST00000558117 NAA15Q9BXJ9 866 aaKnown RBP6.63□□□□□ -1.35
RTF1-204ENST00000558117 SPATC1LQ9H0A9 340 aa6.63□□□□□ -1.35
RTF1-204ENST00000558117 BTBD1Q9H0C5 482 aa6.63□□□□□ -1.35
RTF1-204ENST00000558117 ALDH8A1Q9H2A2 487 aaPredicted RBP6.63□□□□□ -1.35
RTF1-204ENST00000558117 CHST8Q9H2A9 424 aa6.63□□□□□ -1.35
RTF1-204ENST00000558117 IL17RBQ9NRM6 502 aa6.63□□□□□ -1.35
RTF1-204ENST00000558117 SEMA4GQ9NTN9 838 aa6.63□□□□□ -1.35
RTF1-204ENST00000558117 ST3GAL5Q9UNP4 418 aa6.63□□□□□ -1.35
RTF1-204ENST00000558117 NUDCQ9Y266 331 aa6.63□□□□□ -1.35
RTF1-204ENST00000558117 CNPY2Q9Y2B0 182 aa6.63□□□□□ -1.35
RTF1-204ENST00000558117 SNX13Q9Y5W8 968 aa6.63□□□□□ -1.35
RTF1-204ENST00000558117 COX11Q9Y6N1 276 aa6.63□□□□□ -1.35
RTF1-204ENST00000558117 CLSPNQ9HAW4 1339 aa6.62□□□□□ -1.35
RTF1-204ENST00000558117 RHPN2P1A8MT19 583 aa6.62□□□□□ -1.35
RTF1-204ENST00000558117 H7C4K7 107 aa6.62□□□□□ -1.35
RTF1-204ENST00000558117 PMM2O15305 246 aa6.62□□□□□ -1.35
RTF1-204ENST00000558117 SLC16A3O15427 465 aaKnown RBP6.62□□□□□ -1.35
RTF1-204ENST00000558117 PRC1O43663 620 aa6.62□□□□□ -1.35
RTF1-204ENST00000558117 EIF3JO75822 258 aaKnown RBP6.62□□□□□ -1.35
RTF1-204ENST00000558117 RASSF9O75901 435 aa6.62□□□□□ -1.35
RTF1-204ENST00000558117 CABYRO75952 493 aa6.62□□□□□ -1.35
RTF1-204ENST00000558117 SNAI1O95863 264 aaPredicted RBP6.62□□□□□ -1.35
RTF1-204ENST00000558117 IGLV2-14P01704 120 aa6.62□□□□□ -1.35
RTF1-204ENST00000558117 PGK2P07205 417 aa6.62□□□□□ -1.35
RTF1-204ENST00000558117 ASNSP08243 561 aa6.62□□□□□ -1.35
RTF1-204ENST00000558117 HOXB7P09629 217 aa6.62□□□□□ -1.35
RTF1-204ENST00000558117 NDUFB7P17568 137 aa6.62□□□□□ -1.35
RTF1-204ENST00000558117 KLRC1P26715 233 aa6.62□□□□□ -1.35
RTF1-204ENST00000558117 LIPAP38571 399 aa6.62□□□□□ -1.35
RTF1-204ENST00000558117 ALDH9A1P49189 494 aa6.62□□□□□ -1.35
RTF1-204ENST00000558117 CLCN2P51788 898 aa6.62□□□□□ -1.35
RTF1-204ENST00000558117 HTRA4P83105 476 aaPredicted RBP6.62□□□□□ -1.35
RTF1-204ENST00000558117 BEX3Q00994 111 aa6.62□□□□□ -1.35
RTF1-204ENST00000558117 PICALMQ13492 652 aa6.62□□□□□ -1.35
RTF1-204ENST00000558117 GCKRQ14397 625 aa6.62□□□□□ -1.35
RTF1-204ENST00000558117 TCTN1Q2MV58 587 aa6.62□□□□□ -1.35
RTF1-204ENST00000558117 ZNF362Q5T0B9 420 aaPredicted RBP6.62□□□□□ -1.35
RTF1-204ENST00000558117 CC2D1BQ5T0F9 858 aaKnown RBP6.62□□□□□ -1.35
RTF1-204ENST00000558117 ZNF551Q7Z340 670 aaPredicted RBP6.62□□□□□ -1.35
RTF1-204ENST00000558117 SLC15A3Q8IY34 581 aa6.62□□□□□ -1.35
RTF1-204ENST00000558117 CCDC146Q8IYE0 955 aa6.62□□□□□ -1.35
RTF1-204ENST00000558117 PJA1Q8NG27 643 aa6.62□□□□□ -1.35
RTF1-204ENST00000558117 CCDC136Q96JN2 1154 aa6.62□□□□□ -1.35
RTF1-204ENST00000558117 RTP3Q9BQQ7 232 aa6.62□□□□□ -1.35
RTF1-204ENST00000558117 PRDM13Q9H4Q3 707 aa6.62□□□□□ -1.35
RTF1-204ENST00000558117 MROH8Q9H579 483 aa6.62□□□□□ -1.35
RTF1-204ENST00000558117 TRMT13Q9NUP7 481 aaKnown RBP6.62□□□□□ -1.35
RTF1-204ENST00000558117 FANCMQ8IYD8 2048 aa6.62□□□□□ -1.35
RTF1-204ENST00000558117 MROH5Q6ZUA9 1318 aa6.61□□□□□ -1.35
RTF1-204ENST00000558117 CAND2O75155 1236 aa6.61□□□□□ -1.35
RTF1-204ENST00000558117 JUPP14923 745 aa6.61□□□□□ -1.35
RTF1-204ENST00000558117 CD38P28907 300 aa6.61□□□□□ -1.35
RTF1-204ENST00000558117 PSMC6P62333 389 aa6.61□□□□□ -1.35
RTF1-204ENST00000558117 IFIT5Q13325 482 aaKnown RBP6.61□□□□□ -1.35
RTF1-204ENST00000558117 HLTFQ14527 1009 aaKnown RBP eCLIP6.61□□□□□ -1.35
RTF1-204ENST00000558117 LY6KQ17RY6 165 aa6.61□□□□□ -1.35
RTF1-204ENST00000558117 DEPDC1Q5TB30 811 aa6.61□□□□□ -1.35
RTF1-204ENST00000558117 LDHAL6AQ6ZMR3 332 aa6.61□□□□□ -1.35
RTF1-204ENST00000558117 UNC13DQ70J99 1090 aa6.61□□□□□ -1.35
RTF1-204ENST00000558117 TMEM171Q8WVE6 324 aa6.61□□□□□ -1.35
RTF1-204ENST00000558117 ZNF764Q96H86 408 aaPredicted RBP6.61□□□□□ -1.35
RTF1-204ENST00000558117 TBCBQ99426 244 aa6.61□□□□□ -1.35
RTF1-204ENST00000558117 SIL1Q9H173 461 aa6.61□□□□□ -1.35
RTF1-204ENST00000558117 GLOD4Q9HC38 313 aa6.61□□□□□ -1.35
RTF1-204ENST00000558117 ARHGEF3Q9NR81 526 aa6.61□□□□□ -1.35
RTF1-204ENST00000558117 DNMT3BQ9UBC3 853 aaKnown RBP6.61□□□□□ -1.35
RTF1-204ENST00000558117 ITGB1BP2Q9UKP3 347 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms