RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 GALCP54803 685 aa12.81□□□□□ -0.36
SLIRP-209ENST00000557342 ZBTB16Q05516 673 aa12.81□□□□□ -0.36
SLIRP-209ENST00000557342 ZNF252P-AS1Q0IIN9 211 aa12.81□□□□□ -0.36
SLIRP-209ENST00000557342 SFSWAPQ12872 951 aaKnown RBP12.81□□□□□ -0.36
SLIRP-209ENST00000557342 ASTE1Q2TB18 679 aaPredicted RBP12.81□□□□□ -0.36
SLIRP-209ENST00000557342 ARTNQ5T4W7 220 aa12.81□□□□□ -0.36
SLIRP-209ENST00000557342 ERMARDQ5T6L9 678 aa12.81□□□□□ -0.36
SLIRP-209ENST00000557342 PMS2CLQ68D20 193 aa12.81□□□□□ -0.36
SLIRP-209ENST00000557342 H2AFVQ71UI9 128 aa12.81□□□□□ -0.36
SLIRP-209ENST00000557342 LPCAT2Q7L5N7 544 aa12.81□□□□□ -0.36
SLIRP-209ENST00000557342 GAS2L3Q86XJ1 694 aa12.81□□□□□ -0.36
SLIRP-209ENST00000557342 PSTKQ8IV42 348 aaKnown RBP12.81□□□□□ -0.36
SLIRP-209ENST00000557342 ZNF366Q8N895 744 aa12.81□□□□□ -0.36
SLIRP-209ENST00000557342 DCAF4L2Q8NA75 395 aa12.81□□□□□ -0.36
SLIRP-209ENST00000557342 OR52K2Q8NGK3 314 aa12.81□□□□□ -0.36
SLIRP-209ENST00000557342 CTNNBL1Q8WYA6 563 aaPredicted RBP12.81□□□□□ -0.36
SLIRP-209ENST00000557342 RPL10LQ96L21 214 aaKnown RBP12.81□□□□□ -0.36
SLIRP-209ENST00000557342 CCDC42Q96M95 316 aa12.81□□□□□ -0.36
SLIRP-209ENST00000557342 NUP85Q9BW27 656 aa12.81□□□□□ -0.36
SLIRP-209ENST00000557342 MKRN2Q9H000 416 aaKnown RBP12.81□□□□□ -0.36
SLIRP-209ENST00000557342 CATSPERBQ9H7T0 1116 aa12.81□□□□□ -0.36
SLIRP-209ENST00000557342 NHEJ1Q9H9Q4 299 aaPredicted RBP12.81□□□□□ -0.36
SLIRP-209ENST00000557342 ITM2CQ9NQX7 267 aa12.81□□□□□ -0.36
SLIRP-209ENST00000557342 TMEM248Q9NWD8 314 aa12.81□□□□□ -0.36
SLIRP-209ENST00000557342 USP36Q9P275 1121 aaKnown RBP12.81□□□□□ -0.36
SLIRP-209ENST00000557342 ZNF212Q9UDV6 495 aa12.81□□□□□ -0.36
SLIRP-209ENST00000557342 LCMT1Q9UIC8 334 aa12.81□□□□□ -0.36
SLIRP-209ENST00000557342 PCDHGA5Q9Y5G8 931 aa12.81□□□□□ -0.36
SLIRP-209ENST00000557342 IGHV1OR15-9A0A0B4J2B8 117 aa12.8□□□□□ -0.36
SLIRP-209ENST00000557342 TTC34A8MYJ7 566 aa12.8□□□□□ -0.36
SLIRP-209ENST00000557342 FAM72CH0Y354 149 aa12.8□□□□□ -0.36
SLIRP-209ENST00000557342 MYO1FO00160 1098 aa12.8□□□□□ -0.36
SLIRP-209ENST00000557342 FGF10O15520 208 aaPredicted RBP12.8□□□□□ -0.36
SLIRP-209ENST00000557342 ATP9BO43861 1147 aa12.8□□□□□ -0.36
SLIRP-209ENST00000557342 CREB3O43889 395 aa12.8□□□□□ -0.36
SLIRP-209ENST00000557342 SIN3BO75182 1162 aa12.8□□□□□ -0.36
SLIRP-209ENST00000557342 NDUFS2O75306 463 aa12.8□□□□□ -0.36
SLIRP-209ENST00000557342 DNTTP04053 509 aa12.8□□□□□ -0.36
SLIRP-209ENST00000557342 BCKDHBP21953 392 aa12.8□□□□□ -0.36
SLIRP-209ENST00000557342 EPHB2P29323 1055 aa12.8□□□□□ -0.36
SLIRP-209ENST00000557342 MIPP30301 263 aa12.8□□□□□ -0.36
SLIRP-209ENST00000557342 PCK1P35558 622 aa12.8□□□□□ -0.36
SLIRP-209ENST00000557342 DPP6P42658 865 aa12.8□□□□□ -0.36
SLIRP-209ENST00000557342 ZNF135P52742 658 aaPredicted RBP12.8□□□□□ -0.36
SLIRP-209ENST00000557342 GNA12Q03113 381 aa12.8□□□□□ -0.36
SLIRP-209ENST00000557342 FAM72AQ5TYM5 149 aa12.8□□□□□ -0.36
SLIRP-209ENST00000557342 ZNF776Q68DI1 518 aaPredicted RBP12.8□□□□□ -0.36
SLIRP-209ENST00000557342 FAM72DQ6L9T8 149 aa12.8□□□□□ -0.36
SLIRP-209ENST00000557342 RETSATQ6NUM9 610 aa12.8□□□□□ -0.36
SLIRP-209ENST00000557342 NLRP14Q86W24 1093 aa12.8□□□□□ -0.36
SLIRP-209ENST00000557342 FAM72BQ86X60 149 aa12.8□□□□□ -0.36
SLIRP-209ENST00000557342 NIPA2Q8N8Q9 360 aa12.8□□□□□ -0.36
SLIRP-209ENST00000557342 PSMB7Q99436 277 aa12.8□□□□□ -0.36
SLIRP-209ENST00000557342 CHP1Q99653 195 aa12.8□□□□□ -0.36
SLIRP-209ENST00000557342 TRIM7Q9C029 511 aa12.8□□□□□ -0.36
SLIRP-209ENST00000557342 SLC6A17Q9H1V8 727 aa12.8□□□□□ -0.36
SLIRP-209ENST00000557342 RSPH9Q9H1X1 276 aaPredicted RBP12.8□□□□□ -0.36
SLIRP-209ENST00000557342 MAGEH1Q9H213 219 aa12.8□□□□□ -0.36
SLIRP-209ENST00000557342 ATP13A1Q9HD20 1204 aa12.8□□□□□ -0.36
SLIRP-209ENST00000557342 UVRAGQ9P2Y5 699 aa12.8□□□□□ -0.36
SLIRP-209ENST00000557342 PCSK1NQ9UHG2 260 aa12.8□□□□□ -0.36
SLIRP-209ENST00000557342 SLCO3A1Q9UIG8 710 aa12.8□□□□□ -0.36
SLIRP-209ENST00000557342 MBD1Q9UIS9 605 aaPredicted RBP12.8□□□□□ -0.36
SLIRP-209ENST00000557342 ANAPC7Q9UJX3 599 aa12.8□□□□□ -0.36
SLIRP-209ENST00000557342 USP18Q9UMW8 372 aa12.8□□□□□ -0.36
SLIRP-209ENST00000557342 SCML1Q9UN30 329 aa12.8□□□□□ -0.36
SLIRP-209ENST00000557342 CYP8B1Q9UNU6 501 aa12.8□□□□□ -0.36
SLIRP-209ENST00000557342 AP4E1Q9UPM8 1137 aa12.8□□□□□ -0.36
SLIRP-209ENST00000557342 HS3ST2Q9Y278 367 aa12.8□□□□□ -0.36
SLIRP-209ENST00000557342 A0A0D9SEW6 157 aa12.79□□□□□ -0.36
SLIRP-209ENST00000557342 CXorf51AA0A1B0GTR3 108 aa12.79□□□□□ -0.36
SLIRP-209ENST00000557342 WASH4PA8MWX3 477 aa12.79□□□□□ -0.36
SLIRP-209ENST00000557342 FOXD2O60548 495 aaPredicted RBP12.79□□□□□ -0.36
SLIRP-209ENST00000557342 RAMP2O60895 175 aa12.79□□□□□ -0.36
SLIRP-209ENST00000557342 LRCH4O75427 683 aa12.79□□□□□ -0.36
SLIRP-209ENST00000557342 IGLV3-19P01714 112 aa12.79□□□□□ -0.36
SLIRP-209ENST00000557342 TMEM253P0C7T8 217 aa12.79□□□□□ -0.36
SLIRP-209ENST00000557342 CD6P30203 668 aa12.79□□□□□ -0.36
SLIRP-209ENST00000557342 STK19P49842 368 aaPredicted RBP12.79□□□□□ -0.36
SLIRP-209ENST00000557342 TPMTP51580 245 aa12.79□□□□□ -0.36
SLIRP-209ENST00000557342 CLCN6P51797 869 aa12.79□□□□□ -0.36
SLIRP-209ENST00000557342 TPI1P60174 286 aa12.79□□□□□ -0.36
SLIRP-209ENST00000557342 RPS14P62263 151 aaKnown RBP12.79□□□□□ -0.36
SLIRP-209ENST00000557342 RPL6Q02878 288 aaKnown RBP12.79□□□□□ -0.36
SLIRP-209ENST00000557342 SLC20A2Q08357 652 aa12.79□□□□□ -0.36
SLIRP-209ENST00000557342 SEMA3BQ13214 749 aa12.79□□□□□ -0.36
SLIRP-209ENST00000557342 TTC31Q49AM3 519 aaPredicted RBP12.79□□□□□ -0.36
SLIRP-209ENST00000557342 ACCSLQ4AC99 568 aa12.79□□□□□ -0.36
SLIRP-209ENST00000557342 C9orf64Q5T6V5 341 aa12.79□□□□□ -0.36
SLIRP-209ENST00000557342 IL31Q6EBC2 164 aa12.79□□□□□ -0.36
SLIRP-209ENST00000557342 PYROXD2Q8N2H3 581 aa12.79□□□□□ -0.36
SLIRP-209ENST00000557342 DCLK2Q8N568 766 aa12.79□□□□□ -0.36
SLIRP-209ENST00000557342 SH2D3CQ8N5H7 860 aa12.79□□□□□ -0.36
SLIRP-209ENST00000557342 ARFGAP1Q8N6T3 406 aa12.79□□□□□ -0.36
SLIRP-209ENST00000557342 RTL3Q8N8U3 475 aaKnown RBP12.79□□□□□ -0.36
SLIRP-209ENST00000557342 TC2NQ8N9U0 490 aa12.79□□□□□ -0.36
SLIRP-209ENST00000557342 OR7D4Q8NG98 312 aa12.79□□□□□ -0.36
SLIRP-209ENST00000557342 ZNF564Q8TBZ8 553 aaPredicted RBP12.79□□□□□ -0.36
SLIRP-209ENST00000557342 PTPRN2Q92932 1015 aa12.79□□□□□ -0.36
SLIRP-209ENST00000557342 ARHGEF26Q96DR7 871 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms