RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	LSMEM2	Q8N112	164 aa		13.05	□□□□□ -0.32
SHMT2-223	ENST00000556689	OR8D1	Q8WZ84	308 aa		13.05	□□□□□ -0.32
SHMT2-223	ENST00000556689	WBP1	Q96G27	269 aa		13.05	□□□□□ -0.32
SHMT2-223	ENST00000556689	BTN2A3P	Q96KV6	586 aa		13.05	□□□□□ -0.32
SHMT2-223	ENST00000556689	ZNF578	Q96N58	590 aa	Predicted RBP	13.05	□□□□□ -0.32
SHMT2-223	ENST00000556689	PPP1R9B	Q96SB3	815 aa		13.05	□□□□□ -0.32
SHMT2-223	ENST00000556689	TSG101	Q99816	390 aa		13.05	□□□□□ -0.32
SHMT2-223	ENST00000556689	ZSWIM1	Q9BR11	485 aa		13.05	□□□□□ -0.32
SHMT2-223	ENST00000556689	ARMCX3	Q9UH62	379 aa	Predicted RBP	13.05	□□□□□ -0.32
SHMT2-223	ENST00000556689	SLC12A6	Q9UHW9	1150 aa		13.05	□□□□□ -0.32
SHMT2-223	ENST00000556689	SARDH	Q9UL12	918 aa		13.05	□□□□□ -0.32
SHMT2-223	ENST00000556689	FLNB	O75369	2602 aa	Known RBP	13.04	□□□□□ -0.32
SHMT2-223	ENST00000556689	ASH1L	Q9NR48	2969 aa	Known RBP	13.04	□□□□□ -0.32
SHMT2-223	ENST00000556689	C1QTNF3-AMACR	E9PGA6	284 aa		13.04	□□□□□ -0.32
SHMT2-223	ENST00000556689	RNGTT	O60942	597 aa	Known RBP	13.04	□□□□□ -0.32
SHMT2-223	ENST00000556689	ZNF202	O95125	648 aa		13.04	□□□□□ -0.32
SHMT2-223	ENST00000556689	PDGFRA	P16234	1089 aa		13.04	□□□□□ -0.32
SHMT2-223	ENST00000556689	ZNF18	P17022	549 aa		13.04	□□□□□ -0.32
SHMT2-223	ENST00000556689	DGKA	P23743	735 aa		13.04	□□□□□ -0.32
SHMT2-223	ENST00000556689	BRD2	P25440	801 aa	Known RBP	13.04	□□□□□ -0.32
SHMT2-223	ENST00000556689	PRCP	P42785	496 aa		13.04	□□□□□ -0.32
SHMT2-223	ENST00000556689	ACADSB	P45954	432 aa		13.04	□□□□□ -0.32
SHMT2-223	ENST00000556689	NUMB	P49757	651 aa		13.04	□□□□□ -0.32
SHMT2-223	ENST00000556689	VASP	P50552	380 aa	Predicted RBP	13.04	□□□□□ -0.32
SHMT2-223	ENST00000556689	PLK1	P53350	603 aa		13.04	□□□□□ -0.32
SHMT2-223	ENST00000556689	UCN	P55089	124 aa		13.04	□□□□□ -0.32
SHMT2-223	ENST00000556689	OXCT1	P55809	520 aa		13.04	□□□□□ -0.32
SHMT2-223	ENST00000556689	PCBP4	P57723	403 aa	Known RBP	13.04	□□□□□ -0.32
SHMT2-223	ENST00000556689	TMPRSS3	P57727	454 aa		13.04	□□□□□ -0.32
SHMT2-223	ENST00000556689	RHD	Q02161	417 aa		13.04	□□□□□ -0.32
SHMT2-223	ENST00000556689	CNTN1	Q12860	1018 aa		13.04	□□□□□ -0.32
SHMT2-223	ENST00000556689	POM121L1P	Q3SYA9	428 aa		13.04	□□□□□ -0.32
SHMT2-223	ENST00000556689	ZC3H12A	Q5D1E8	599 aa	Known RBP	13.04	□□□□□ -0.32
SHMT2-223	ENST00000556689	SYPL2	Q5VXT5	272 aa		13.04	□□□□□ -0.32
SHMT2-223	ENST00000556689	ANKRD40	Q6AI12	368 aa		13.04	□□□□□ -0.32
SHMT2-223	ENST00000556689	TAC4	Q86UU9	113 aa		13.04	□□□□□ -0.32
SHMT2-223	ENST00000556689	ATP6V0D2	Q8N8Y2	350 aa		13.04	□□□□□ -0.32
SHMT2-223	ENST00000556689	OR4C6	Q8NH72	309 aa		13.04	□□□□□ -0.32
SHMT2-223	ENST00000556689	CCDC34	Q96HJ3	373 aa		13.04	□□□□□ -0.32
SHMT2-223	ENST00000556689	NT5C1B	Q96P26	610 aa		13.04	□□□□□ -0.32
SHMT2-223	ENST00000556689	TRIM62	Q9BVG3	475 aa		13.04	□□□□□ -0.32
SHMT2-223	ENST00000556689	ST7	Q9NRC1	585 aa		13.04	□□□□□ -0.32
SHMT2-223	ENST00000556689	KLHL11	Q9NVR0	708 aa		13.04	□□□□□ -0.32
SHMT2-223	ENST00000556689	SLTM	Q9NWH9	1034 aa	Known RBP eCLIP	13.04	□□□□□ -0.32
SHMT2-223	ENST00000556689	PPM1H	Q9ULR3	514 aa		13.04	□□□□□ -0.32
SHMT2-223	ENST00000556689	PCDHB1	Q9Y5F3	818 aa		13.04	□□□□□ -0.32
SHMT2-223	ENST00000556689		F5H5T6	163 aa		13.03	□□□□□ -0.32
SHMT2-223	ENST00000556689	MCF2L	O15068	1137 aa		13.03	□□□□□ -0.32
SHMT2-223	ENST00000556689	SLC31A1	O15431	190 aa		13.03	□□□□□ -0.32
SHMT2-223	ENST00000556689	ATP9B	O43861	1147 aa		13.03	□□□□□ -0.32
SHMT2-223	ENST00000556689	OPA1	O60313	960 aa		13.03	□□□□□ -0.32
SHMT2-223	ENST00000556689	CALCA	P01258	141 aa		13.03	□□□□□ -0.32
SHMT2-223	ENST00000556689	MPO	P05164	745 aa		13.03	□□□□□ -0.32
SHMT2-223	ENST00000556689	THEGL	P0DJG4	465 aa		13.03	□□□□□ -0.32
SHMT2-223	ENST00000556689	CKMT1A	P12532	417 aa		13.03	□□□□□ -0.32
SHMT2-223	ENST00000556689	GPD2	P43304	727 aa		13.03	□□□□□ -0.32
SHMT2-223	ENST00000556689	RPL34	P49207	117 aa	Known RBP	13.03	□□□□□ -0.32
SHMT2-223	ENST00000556689	KRT85	P78386	507 aa		13.03	□□□□□ -0.32
SHMT2-223	ENST00000556689	KCNMA1	Q12791	1236 aa		13.03	□□□□□ -0.32
SHMT2-223	ENST00000556689	ARHGAP40	Q5TG30	622 aa		13.03	□□□□□ -0.32
SHMT2-223	ENST00000556689	AGBL4	Q5VU57	503 aa		13.03	□□□□□ -0.32
SHMT2-223	ENST00000556689	CDCP2	Q5VXM1	449 aa		13.03	□□□□□ -0.32
SHMT2-223	ENST00000556689	TMC6	Q7Z403	805 aa		13.03	□□□□□ -0.32
SHMT2-223	ENST00000556689	CCAR2	Q8N163	923 aa	Known RBP	13.03	□□□□□ -0.32
SHMT2-223	ENST00000556689	PPM1K	Q8N3J5	372 aa		13.03	□□□□□ -0.32
SHMT2-223	ENST00000556689	ERCC4	Q92889	916 aa	Predicted RBP	13.03	□□□□□ -0.32
SHMT2-223	ENST00000556689	SLC35C1	Q96A29	364 aa		13.03	□□□□□ -0.32
SHMT2-223	ENST00000556689	HIC2	Q96JB3	615 aa		13.03	□□□□□ -0.32
SHMT2-223	ENST00000556689	DEPDC7	Q96QD5	511 aa		13.03	□□□□□ -0.32
SHMT2-223	ENST00000556689	PREB	Q9HCU5	417 aa		13.03	□□□□□ -0.32
SHMT2-223	ENST00000556689	RMND1	Q9NWS8	449 aa		13.03	□□□□□ -0.32
SHMT2-223	ENST00000556689	UCKL1	Q9NWZ5	548 aa		13.03	□□□□□ -0.32
SHMT2-223	ENST00000556689	CA5B	Q9Y2D0	317 aa		13.03	□□□□□ -0.32
SHMT2-223	ENST00000556689		A0A1W2PQ27	194 aa		13.02	□□□□□ -0.33
SHMT2-223	ENST00000556689		A0A1W2PQ64	194 aa		13.02	□□□□□ -0.33
SHMT2-223	ENST00000556689	KCNU1	A8MYU2	1149 aa		13.02	□□□□□ -0.33
SHMT2-223	ENST00000556689	PMM2	O15305	246 aa		13.02	□□□□□ -0.33
SHMT2-223	ENST00000556689	USP12	O75317	370 aa		13.02	□□□□□ -0.33
SHMT2-223	ENST00000556689	DXO	O77932	396 aa	Known RBP	13.02	□□□□□ -0.33
SHMT2-223	ENST00000556689	TRUB2	O95900	331 aa	Known RBP	13.02	□□□□□ -0.33
SHMT2-223	ENST00000556689	ALPPL2	P10696	532 aa		13.02	□□□□□ -0.33
SHMT2-223	ENST00000556689	LSS	P48449	732 aa		13.02	□□□□□ -0.33
SHMT2-223	ENST00000556689	FMO5	P49326	533 aa		13.02	□□□□□ -0.33
SHMT2-223	ENST00000556689	ERVPABLB-1	P60509	514 aa		13.02	□□□□□ -0.33
SHMT2-223	ENST00000556689	GABRE	P78334	506 aa		13.02	□□□□□ -0.33
SHMT2-223	ENST00000556689	CCDC15	Q0P6D6	951 aa		13.02	□□□□□ -0.33
SHMT2-223	ENST00000556689	DLG2	Q15700	870 aa		13.02	□□□□□ -0.33
SHMT2-223	ENST00000556689	RABGAP1L	Q5R372	815 aa		13.02	□□□□□ -0.33
SHMT2-223	ENST00000556689	TTC39B	Q5VTQ0	682 aa	Predicted RBP	13.02	□□□□□ -0.33
SHMT2-223	ENST00000556689	NEK5	Q6P3R8	708 aa		13.02	□□□□□ -0.33
SHMT2-223	ENST00000556689	CIR1	Q86X95	450 aa	Predicted RBP	13.02	□□□□□ -0.33
SHMT2-223	ENST00000556689	MED15	Q96RN5	788 aa		13.02	□□□□□ -0.33
SHMT2-223	ENST00000556689	PRMT1	Q99873	361 aa	Known RBP	13.02	□□□□□ -0.33
SHMT2-223	ENST00000556689	ABCG4	Q9H172	646 aa		13.02	□□□□□ -0.33
SHMT2-223	ENST00000556689	POPDC2	Q9HBU9	364 aa		13.02	□□□□□ -0.33
SHMT2-223	ENST00000556689	METTL14	Q9HCE5	456 aa	Known RBP	13.02	□□□□□ -0.33
SHMT2-223	ENST00000556689	CPNE5	Q9HCH3	593 aa		13.02	□□□□□ -0.33
SHMT2-223	ENST00000556689	SLC25A13	Q9UJS0	675 aa		13.02	□□□□□ -0.33
SHMT2-223	ENST00000556689	FARP1	Q9Y4F1	1045 aa	Predicted RBP	13.02	□□□□□ -0.33
SHMT2-223	ENST00000556689	MGA	Q8IWI9	3026 aa		13.02	□□□□□ -0.33

Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms