RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-205ENST00000556096 ZNF840PA6NDX5 716 aa15.05■□□□□ -0
VPS33B-205ENST00000556096 JCHAINP01591 159 aa15.05■□□□□ -0
VPS33B-205ENST00000556096 C1QAP02745 245 aa15.05■□□□□ -0
VPS33B-205ENST00000556096 CREB1P16220 341 aa15.05■□□□□ -0
VPS33B-205ENST00000556096 STEAP4Q687X5 459 aa15.05■□□□□ -0
VPS33B-205ENST00000556096 SRRM1Q8IYB3 904 aaKnown RBP15.05■□□□□ -0
VPS33B-205ENST00000556096 BCAS4Q8TDM0 211 aa15.05■□□□□ -0
VPS33B-205ENST00000556096 SLC44A1Q8WWI5 657 aa15.05■□□□□ -0
VPS33B-205ENST00000556096 FATE1Q969F0 183 aa15.05■□□□□ -0
VPS33B-205ENST00000556096 CFAP36Q96G28 342 aa15.05■□□□□ -0
VPS33B-205ENST00000556096 LRCH3Q96II8 777 aa15.05■□□□□ -0
VPS33B-205ENST00000556096 AGAP3Q96P47 875 aa15.05■□□□□ -0
VPS33B-205ENST00000556096 RAD9AQ99638 391 aa15.05■□□□□ -0
VPS33B-205ENST00000556096 IL12RB2Q99665 862 aa15.05■□□□□ -0
VPS33B-205ENST00000556096 NAT9Q9BTE0 207 aa15.05■□□□□ -0
VPS33B-205ENST00000556096 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP15.05■□□□□ -0
VPS33B-205ENST00000556096 NDFIP2Q9NV92 336 aa15.05■□□□□ -0
VPS33B-205ENST00000556096 MPP6Q9NZW5 540 aa15.05■□□□□ -0
VPS33B-205ENST00000556096 VANGL2Q9ULK5 521 aa15.05■□□□□ -0
VPS33B-205ENST00000556096 YIPF1Q9Y548 306 aa15.05■□□□□ -0
VPS33B-205ENST00000556096 PCDHA11Q9Y5I1 949 aa15.05■□□□□ -0
VPS33B-205ENST00000556096 TMEM120BA0PK00 339 aa15.04■□□□□ -0
VPS33B-205ENST00000556096 GMNCA6NCL1 334 aa15.04■□□□□ -0
VPS33B-205ENST00000556096 SLC34A2O95436 690 aa15.04■□□□□ -0
VPS33B-205ENST00000556096 LINC00271P0C7V0 271 aa15.04■□□□□ -0
VPS33B-205ENST00000556096 CCNB1P14635 433 aa15.04■□□□□ -0
VPS33B-205ENST00000556096 PPP3CCP48454 512 aa15.04■□□□□ -0
VPS33B-205ENST00000556096 SLC18A1P54219 525 aa15.04■□□□□ -0
VPS33B-205ENST00000556096 CREMQ03060 361 aa15.04■□□□□ -0
VPS33B-205ENST00000556096 PRPSAP1Q14558 356 aa15.04■□□□□ -0
VPS33B-205ENST00000556096 EFTUD2Q15029 972 aaKnown RBP eCLIP15.04■□□□□ -08e-9■■■■■ 34.3
VPS33B-205ENST00000556096 ZSCAN26Q16670 478 aa15.04■□□□□ -0
VPS33B-205ENST00000556096 KBTBD12Q3ZCT8 623 aa15.04■□□□□ -0
VPS33B-205ENST00000556096 HECTD3Q5T447 861 aa15.04■□□□□ -0
VPS33B-205ENST00000556096 FBXL22Q6P050 247 aa15.04■□□□□ -0
VPS33B-205ENST00000556096 UNC5AQ6ZN44 842 aa15.04■□□□□ -0
VPS33B-205ENST00000556096 TCEAL8Q8IYN2 117 aa15.04■□□□□ -0
VPS33B-205ENST00000556096 MPP5Q8N3R9 675 aa15.04■□□□□ -0
VPS33B-205ENST00000556096 GSDMBQ8TAX9 411 aa15.04■□□□□ -0
VPS33B-205ENST00000556096 ATXN2LQ8WWM7 1075 aaKnown RBP15.04■□□□□ -0
VPS33B-205ENST00000556096 STAMBPL1Q96FJ0 436 aa15.04■□□□□ -0
VPS33B-205ENST00000556096 ZNF512Q96ME7 567 aaPredicted RBP15.04■□□□□ -0
VPS33B-205ENST00000556096 CCDC134Q9H6E4 229 aa15.04■□□□□ -0
VPS33B-205ENST00000556096 RETREG1Q9H6L5 497 aa15.04■□□□□ -0
VPS33B-205ENST00000556096 MRPL17Q9NRX2 175 aaKnown RBP15.04■□□□□ -0
VPS33B-205ENST00000556096 PCDHB12Q9Y5F1 795 aa15.04■□□□□ -0
VPS33B-205ENST00000556096 MAD1L1Q9Y6D9 718 aa15.04■□□□□ -0
VPS33B-205ENST00000556096 NUP205Q92621 2012 aa15.04■□□□□ -0
VPS33B-205ENST00000556096 ARHGAP42A6NI28 874 aa15.03■□□□□ -0
VPS33B-205ENST00000556096 F5H423 210 aaPredicted RBP15.03■□□□□ -0
VPS33B-205ENST00000556096 AP3B1O00203 1094 aa15.03■□□□□ -0
VPS33B-205ENST00000556096 LILRB3O75022 631 aa15.03■□□□□ -0
VPS33B-205ENST00000556096 HMBSP08397 361 aa15.03■□□□□ -0
VPS33B-205ENST00000556096 KRT15P19012 456 aa15.03■□□□□ -0
VPS33B-205ENST00000556096 NFKB1P19838 968 aa15.03■□□□□ -0
VPS33B-205ENST00000556096 PAPOLAP51003 745 aaKnown RBP15.03■□□□□ -0
VPS33B-205ENST00000556096 VEPH1Q14D04 833 aa15.03■□□□□ -0
VPS33B-205ENST00000556096 C5orf22Q49AR2 442 aa15.03■□□□□ -0
VPS33B-205ENST00000556096 RAP1GAP2Q684P5 730 aa15.03■□□□□ -0
VPS33B-205ENST00000556096 ARHGAP36Q6ZRI8 547 aa15.03■□□□□ -0
VPS33B-205ENST00000556096 CNTD1Q8N815 330 aa15.03■□□□□ -0
VPS33B-205ENST00000556096 SP7Q8TDD2 431 aaPredicted RBP15.03■□□□□ -0
VPS33B-205ENST00000556096 PPP1R2P1Q96PQ5 205 aa15.03■□□□□ -0
VPS33B-205ENST00000556096 TRABDQ9H4I3 376 aa15.03■□□□□ -0
VPS33B-205ENST00000556096 NOL6Q9H6R4 1146 aaKnown RBP15.03■□□□□ -0
VPS33B-205ENST00000556096 RXFP1Q9HBX9 757 aa15.03■□□□□ -0
VPS33B-205ENST00000556096 SSU72Q9NP77 194 aaKnown RBP15.03■□□□□ -0
VPS33B-205ENST00000556096 KCNK9Q9NPC2 374 aa15.03■□□□□ -0
VPS33B-205ENST00000556096 PPANQ9NQ55 473 aaKnown RBP15.03■□□□□ -0
VPS33B-205ENST00000556096 CASS4Q9NQ75 786 aa15.03■□□□□ -0
VPS33B-205ENST00000556096 TRPM5Q9NZQ8 1165 aa15.03■□□□□ -0
VPS33B-205ENST00000556096 SSX2IPQ9Y2D8 614 aa15.03■□□□□ -0
VPS33B-205ENST00000556096 ERICH4A6NGS2 130 aa15.03■□□□□ -0
VPS33B-205ENST00000556096 FOXO6A8MYZ6 492 aa15.03■□□□□ -0
VPS33B-205ENST00000556096 PRPF4O43172 522 aaKnown RBP eCLIP15.03■□□□□ -0
VPS33B-205ENST00000556096 CSPG5O95196 566 aa15.03■□□□□ -0
VPS33B-205ENST00000556096 DNAJB2P25686 324 aa15.03■□□□□ -0
VPS33B-205ENST00000556096 ELF1P32519 619 aa15.03■□□□□ -0
VPS33B-205ENST00000556096 IFNAR2P48551 515 aa15.03■□□□□ -0
VPS33B-205ENST00000556096 ANO4Q32M45 955 aa15.03■□□□□ -0
VPS33B-205ENST00000556096 PRPF39Q86UA1 669 aaKnown RBP15.03■□□□□ -0
VPS33B-205ENST00000556096 SLC26A11Q86WA9 606 aa15.03■□□□□ -0
VPS33B-205ENST00000556096 LRRC6Q86X45 466 aa15.03■□□□□ -0
VPS33B-205ENST00000556096 MZB1Q8WU39 189 aa15.03■□□□□ -0
VPS33B-205ENST00000556096 ARNTL2Q8WYA1 636 aa15.03■□□□□ -0
VPS33B-205ENST00000556096 CLP1Q92989 425 aaKnown RBP15.03■□□□□ -0
VPS33B-205ENST00000556096 IGSF8Q969P0 613 aa15.03■□□□□ -0
VPS33B-205ENST00000556096 AZIN2Q96A70 460 aa15.03■□□□□ -0
VPS33B-205ENST00000556096 FCRL5Q96RD9 977 aa15.03■□□□□ -0
VPS33B-205ENST00000556096 MLPHQ9BV36 600 aaPredicted RBP15.03■□□□□ -0
VPS33B-205ENST00000556096 MOCS1Q9NZB8 636 aa15.03■□□□□ -0
VPS33B-205ENST00000556096 ZNF212Q9UDV6 495 aa15.03■□□□□ -0
VPS33B-205ENST00000556096 MSRAQ9UJ68 235 aa15.03■□□□□ -0
VPS33B-205ENST00000556096 ZNF180Q9UJW8 692 aa15.03■□□□□ -0
VPS33B-205ENST00000556096 SMG5Q9UPR3 1016 aaKnown RBP15.03■□□□□ -0
VPS33B-205ENST00000556096 AAR2Q9Y312 384 aaKnown RBP15.03■□□□□ -0
VPS33B-205ENST00000556096 IKBKGQ9Y6K9 419 aa15.03■□□□□ -0
VPS33B-205ENST00000556096 IQANK1A0A1B0GTG1 560 aa15.02□□□□□ -0.01
VPS33B-205ENST00000556096 LINC01553A4QN01 128 aa15.02□□□□□ -0.01
VPS33B-205ENST00000556096 FAM159BA6NKW6 160 aa15.02□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms