RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 IRAK2O43187 625 aa11.96□□□□□ -0.5
SHMT2-212ENST00000554467 STK10O94804 968 aaKnown RBP11.96□□□□□ -0.5
SHMT2-212ENST00000554467 MRPS35P82673 323 aaKnown RBP11.96□□□□□ -0.5
SHMT2-212ENST00000554467 ZNF449Q6P9G9 518 aa11.96□□□□□ -0.5
SHMT2-212ENST00000554467 RNF19BQ6ZMZ0 732 aa11.96□□□□□ -0.5
SHMT2-212ENST00000554467 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.96□□□□□ -0.54e-7■□□□□ 9.3
SHMT2-212ENST00000554467 KDELC2Q7Z4H8 507 aa11.96□□□□□ -0.5
SHMT2-212ENST00000554467 TFAP2DQ7Z6R9 452 aa11.96□□□□□ -0.5
SHMT2-212ENST00000554467 REM2Q8IYK8 340 aaPredicted RBP11.96□□□□□ -0.5
SHMT2-212ENST00000554467 RIBC1Q8N443 379 aaPredicted RBP11.96□□□□□ -0.5
SHMT2-212ENST00000554467 FCRL2Q96LA5 508 aaPredicted RBP11.96□□□□□ -0.5
SHMT2-212ENST00000554467 RNPEPL1Q9HAU8 725 aa11.96□□□□□ -0.5
SHMT2-212ENST00000554467 ADAM12O43184 909 aa11.95□□□□□ -0.5
SHMT2-212ENST00000554467 TOP3BO95985 862 aaKnown RBP11.95□□□□□ -0.5
SHMT2-212ENST00000554467 F9P00740 461 aa11.95□□□□□ -0.5
SHMT2-212ENST00000554467 ALDH2P05091 517 aa11.95□□□□□ -0.5
SHMT2-212ENST00000554467 TPH1P17752 444 aa11.95□□□□□ -0.5
SHMT2-212ENST00000554467 ADRA1DP25100 572 aa11.95□□□□□ -0.5
SHMT2-212ENST00000554467 BFSP2Q13515 415 aa11.95□□□□□ -0.5
SHMT2-212ENST00000554467 SEPT7Q16181 437 aaKnown RBP11.95□□□□□ -0.5
SHMT2-212ENST00000554467 HHATQ5VTY9 493 aa11.95□□□□□ -0.5
SHMT2-212ENST00000554467 OTOP3Q7RTS5 596 aa11.95□□□□□ -0.5
SHMT2-212ENST00000554467 CKAP2Q8WWK9 683 aa11.95□□□□□ -0.5
SHMT2-212ENST00000554467 IRGQQ8WZA9 623 aa11.95□□□□□ -0.5
SHMT2-212ENST00000554467 PGAP3Q96FM1 320 aaPredicted RBP11.95□□□□□ -0.5
SHMT2-212ENST00000554467 FTHL17Q9BXU8 183 aa11.95□□□□□ -0.5
SHMT2-212ENST00000554467 ABCC13Q9NSE7 274 aa11.95□□□□□ -0.5
SHMT2-212ENST00000554467 SYBUQ9NX95 663 aa11.95□□□□□ -0.5
SHMT2-212ENST00000554467 KLHL14Q9P2G3 628 aa11.95□□□□□ -0.5
SHMT2-212ENST00000554467 KANSL3Q9P2N6 904 aa11.95□□□□□ -0.5
SHMT2-212ENST00000554467 MYO16Q9Y6X6 1858 aa11.95□□□□□ -0.5
SHMT2-212ENST00000554467 E2F8A0AVK6 867 aa11.95□□□□□ -0.5
SHMT2-212ENST00000554467 HACD1B0YJ81 288 aa11.95□□□□□ -0.5
SHMT2-212ENST00000554467 INPPL1O15357 1258 aa11.95□□□□□ -0.5
SHMT2-212ENST00000554467 WFS1O76024 890 aa11.95□□□□□ -0.5
SHMT2-212ENST00000554467 C1QAP02745 245 aa11.95□□□□□ -0.5
SHMT2-212ENST00000554467 GLUD2P49448 558 aa11.95□□□□□ -0.5
SHMT2-212ENST00000554467 DUSP4Q13115 394 aa11.95□□□□□ -0.5
SHMT2-212ENST00000554467 LVRNQ6Q4G3 990 aa11.95□□□□□ -0.5
SHMT2-212ENST00000554467 MZB1Q8WU39 189 aa11.95□□□□□ -0.5
SHMT2-212ENST00000554467 ZNF419Q96HQ0 510 aaPredicted RBP11.95□□□□□ -0.5
SHMT2-212ENST00000554467 EBNA1BP2Q99848 306 aaKnown RBP11.95□□□□□ -0.5
SHMT2-212ENST00000554467 PLCD4Q9BRC7 762 aa11.95□□□□□ -0.5
SHMT2-212ENST00000554467 DHRS4Q9BTZ2 278 aa11.95□□□□□ -0.5
SHMT2-212ENST00000554467 HIPK3Q9H422 1215 aa11.95□□□□□ -0.5
SHMT2-212ENST00000554467 TRIM49D1C9J1S8 452 aa11.95□□□□□ -0.5
SHMT2-212ENST00000554467 MT-ND3P03897 115 aa11.95□□□□□ -0.5
SHMT2-212ENST00000554467 NFKB1P19838 968 aa11.95□□□□□ -0.5
SHMT2-212ENST00000554467 CD68P34810 354 aaPredicted RBP11.95□□□□□ -0.5
SHMT2-212ENST00000554467 GMPRP36959 345 aa11.95□□□□□ -0.5
SHMT2-212ENST00000554467 PTDSS1P48651 473 aaKnown RBP11.95□□□□□ -0.5
SHMT2-212ENST00000554467 MROH9Q5TGP6 573 aa11.95□□□□□ -0.5
SHMT2-212ENST00000554467 FUT10Q6P4F1 479 aa11.95□□□□□ -0.5
SHMT2-212ENST00000554467 DCP1BQ8IZD4 617 aaKnown RBP11.95□□□□□ -0.5
SHMT2-212ENST00000554467 NUP93Q8N1F7 819 aa11.95□□□□□ -0.5
SHMT2-212ENST00000554467 TCP10LQ8TDR4 215 aa11.95□□□□□ -0.5
SHMT2-212ENST00000554467 SLC44A1Q8WWI5 657 aa11.95□□□□□ -0.5
SHMT2-212ENST00000554467 SEPT8Q92599 483 aa11.95□□□□□ -0.5
SHMT2-212ENST00000554467 RXFP1Q9HBX9 757 aa11.95□□□□□ -0.5
SHMT2-212ENST00000554467 VANGL2Q9ULK5 521 aa11.95□□□□□ -0.5
SHMT2-212ENST00000554467 PCDHB5Q9Y5E4 795 aa11.95□□□□□ -0.5
SHMT2-212ENST00000554467 OPHN1O60890 802 aa11.94□□□□□ -0.5
SHMT2-212ENST00000554467 APOEP02649 317 aa11.94□□□□□ -0.5
SHMT2-212ENST00000554467 GARSP41250 739 aaKnown RBP11.94□□□□□ -0.5
SHMT2-212ENST00000554467 MAGEA3P43357 314 aa11.94□□□□□ -0.5
SHMT2-212ENST00000554467 MAGEA6P43360 314 aa11.94□□□□□ -0.5
SHMT2-212ENST00000554467 CUL3Q13618 768 aa11.94□□□□□ -0.5
SHMT2-212ENST00000554467 MCUQ8NE86 351 aa11.94□□□□□ -0.5
SHMT2-212ENST00000554467 SPATA22Q8NHS9 363 aa11.94□□□□□ -0.5
SHMT2-212ENST00000554467 TTC8Q8TAM2 541 aa11.94□□□□□ -0.5
SHMT2-212ENST00000554467 DIS3LQ8TF46 1054 aaKnown RBP11.94□□□□□ -0.5
SHMT2-212ENST00000554467 ANKRD27Q96NW4 1050 aa11.94□□□□□ -0.5
SHMT2-212ENST00000554467 TMEM237Q96Q45 408 aa11.94□□□□□ -0.5
SHMT2-212ENST00000554467 SLC13A1Q9BZW2 595 aa11.94□□□□□ -0.5
SHMT2-212ENST00000554467 TRIM4Q9C037 500 aa11.94□□□□□ -0.5
SHMT2-212ENST00000554467 TYROBPO43914 113 aa11.94□□□□□ -0.5
SHMT2-212ENST00000554467 ASMTLO95671 621 aa11.94□□□□□ -0.5
SHMT2-212ENST00000554467 TPSB2P20231 275 aa11.94□□□□□ -0.5
SHMT2-212ENST00000554467 TAC1P20366 129 aa11.94□□□□□ -0.5
SHMT2-212ENST00000554467 CCR1P32246 355 aa11.94□□□□□ -0.5
SHMT2-212ENST00000554467 ABCG1P45844 678 aa11.94□□□□□ -0.5
SHMT2-212ENST00000554467 TPSAB1Q15661 275 aa11.94□□□□□ -0.5
SHMT2-212ENST00000554467 PSMD5Q16401 504 aa11.94□□□□□ -0.5
SHMT2-212ENST00000554467 PABPC1LQ4VXU2 614 aaKnown RBP11.94□□□□□ -0.5
SHMT2-212ENST00000554467 LRRC6Q86X45 466 aa11.94□□□□□ -0.5
SHMT2-212ENST00000554467 CIR1Q86X95 450 aaPredicted RBP11.94□□□□□ -0.5
SHMT2-212ENST00000554467 ATXN7L3BQ96GX2 97 aa11.94□□□□□ -0.5
SHMT2-212ENST00000554467 CDY1Q9Y6F8 540 aa11.94□□□□□ -0.5
SHMT2-212ENST00000554467 ATP9BO43861 1147 aa11.93□□□□□ -0.5
SHMT2-212ENST00000554467 VNN2O95498 520 aa11.93□□□□□ -0.5
SHMT2-212ENST00000554467 GNRH1P01148 92 aa11.93□□□□□ -0.5
SHMT2-212ENST00000554467 IGLV3-25P01717 112 aa11.93□□□□□ -0.5
SHMT2-212ENST00000554467 GALTP07902 379 aa11.93□□□□□ -0.5
SHMT2-212ENST00000554467 CCL5P13501 91 aa11.93□□□□□ -0.5
SHMT2-212ENST00000554467 TLE2Q04725 743 aa11.93□□□□□ -0.5
SHMT2-212ENST00000554467 TAF10Q12962 218 aa11.93□□□□□ -0.5
SHMT2-212ENST00000554467 PPP2R5DQ14738 602 aa11.93□□□□□ -0.5
SHMT2-212ENST00000554467 TRIM60Q495X7 471 aa11.93□□□□□ -0.5
SHMT2-212ENST00000554467 CMPK2Q5EBM0 449 aa11.93□□□□□ -0.5
SHMT2-212ENST00000554467 DNAAF3Q8N9W5 541 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms