RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 WDR70Q9NW82 654 aa13.34□□□□□ -0.27
VPS29-211ENST00000553128 UNC79Q9P2D8 2635 aa13.34□□□□□ -0.27
VPS29-211ENST00000553128 TDRD6O60522 2096 aaKnown RBP13.33□□□□□ -0.27
VPS29-211ENST00000553128 POLR2DO15514 142 aaKnown RBP13.33□□□□□ -0.28
VPS29-211ENST00000553128 RNGTTO60942 597 aaKnown RBP13.33□□□□□ -0.28
VPS29-211ENST00000553128 LUC7L3O95232 432 aaKnown RBP13.33□□□□□ -0.28
VPS29-211ENST00000553128 FAM87AP0C7U9 286 aa13.33□□□□□ -0.28
VPS29-211ENST00000553128 PDX1P52945 283 aa13.33□□□□□ -0.28
VPS29-211ENST00000553128 TBX4P57082 545 aa13.33□□□□□ -0.28
VPS29-211ENST00000553128 STK38Q15208 465 aa13.33□□□□□ -0.28
VPS29-211ENST00000553128 MS4A13Q5J8X5 152 aa13.33□□□□□ -0.28
VPS29-211ENST00000553128 RNF219Q5W0B1 726 aaPredicted RBP13.33□□□□□ -0.28
VPS29-211ENST00000553128 NUGGCQ68CJ6 796 aa13.33□□□□□ -0.28
VPS29-211ENST00000553128 ZNF574Q6ZN55 896 aaPredicted RBP13.33□□□□□ -0.28
VPS29-211ENST00000553128 CLEC14AQ86T13 490 aa13.33□□□□□ -0.28
VPS29-211ENST00000553128 UNC45BQ8IWX7 931 aa13.33□□□□□ -0.28
VPS29-211ENST00000553128 ZNF557Q8N988 423 aaPredicted RBP13.33□□□□□ -0.28
VPS29-211ENST00000553128 SPAG5Q96R06 1193 aa13.33□□□□□ -0.28
VPS29-211ENST00000553128 CCNL2Q96S94 520 aaPredicted RBP13.33□□□□□ -0.28
VPS29-211ENST00000553128 IRX2Q9BZI1 471 aaPredicted RBP13.33□□□□□ -0.28
VPS29-211ENST00000553128 PCDHGA8Q9Y5G5 932 aa13.33□□□□□ -0.28
VPS29-211ENST00000553128 KIF26BQ2KJY2 2108 aa13.33□□□□□ -0.28
VPS29-211ENST00000553128 CPED1A4D0V7 1026 aa13.32□□□□□ -0.28
VPS29-211ENST00000553128 RNF103O00237 685 aa13.32□□□□□ -0.28
VPS29-211ENST00000553128 PDXKO00764 312 aa13.32□□□□□ -0.28
VPS29-211ENST00000553128 SCAMP1O15126 338 aa13.32□□□□□ -0.28
VPS29-211ENST00000553128 SPTLC2O15270 562 aa13.32□□□□□ -0.28
VPS29-211ENST00000553128 SLC7A4O43246 635 aa13.32□□□□□ -0.28
VPS29-211ENST00000553128 TNFSF15O95150 251 aa13.32□□□□□ -0.28
VPS29-211ENST00000553128 ALPPL2P10696 532 aa13.32□□□□□ -0.28
VPS29-211ENST00000553128 PDIA4P13667 645 aaKnown RBP13.32□□□□□ -0.28
VPS29-211ENST00000553128 NUDT1P36639 197 aa13.32□□□□□ -0.28
VPS29-211ENST00000553128 RGS7P49802 495 aa13.32□□□□□ -0.28
VPS29-211ENST00000553128 SLC8A3P57103 927 aa13.32□□□□□ -0.28
VPS29-211ENST00000553128 BST2Q10589 180 aaKnown RBP13.32□□□□□ -0.28
VPS29-211ENST00000553128 TGIF1Q15583 401 aa13.32□□□□□ -0.28
VPS29-211ENST00000553128 PERM1Q5SV97 790 aa13.32□□□□□ -0.28
VPS29-211ENST00000553128 GCNT7Q6ZNI0 430 aa13.32□□□□□ -0.28
VPS29-211ENST00000553128 EFL1Q7Z2Z2 1120 aaKnown RBP13.32□□□□□ -0.28
VPS29-211ENST00000553128 CIR1Q86X95 450 aaPredicted RBP13.32□□□□□ -0.28
VPS29-211ENST00000553128 SIX6OS1Q8N1H7 587 aa13.32□□□□□ -0.28
VPS29-211ENST00000553128 AZIN2Q96A70 460 aa13.32□□□□□ -0.28
VPS29-211ENST00000553128 CCDC97Q96F63 343 aaPredicted RBP13.32□□□□□ -0.28
VPS29-211ENST00000553128 DNAJC28Q9NX36 388 aa13.32□□□□□ -0.28
VPS29-211ENST00000553128 PPM1HQ9ULR3 514 aa13.32□□□□□ -0.28
VPS29-211ENST00000553128 MTMR6Q9Y217 621 aa13.32□□□□□ -0.28
VPS29-211ENST00000553128 FRMD4BQ9Y2L6 1034 aa13.32□□□□□ -0.28
VPS29-211ENST00000553128 TLN1Q9Y490 2541 aaKnown RBP13.32□□□□□ -0.28
VPS29-211ENST00000553128 UTP20O75691 2785 aaKnown RBP13.32□□□□□ -0.28
VPS29-211ENST00000553128 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.31□□□□□ -0.28
VPS29-211ENST00000553128 A0A1W2PQU0 124 aa13.31□□□□□ -0.28
VPS29-211ENST00000553128 NOBOXO60393 691 aa13.31□□□□□ -0.28
VPS29-211ENST00000553128 MOCS3O95396 460 aa13.31□□□□□ -0.28
VPS29-211ENST00000553128 MOCS2O96007 188 aaPredicted RBP13.31□□□□□ -0.28
VPS29-211ENST00000553128 NTRK1P04629 796 aa13.31□□□□□ -0.28
VPS29-211ENST00000553128 FYNP06241 537 aa13.31□□□□□ -0.28
VPS29-211ENST00000553128 PDGFRAP16234 1089 aa13.31□□□□□ -0.28
VPS29-211ENST00000553128 DUSP3P51452 185 aaPredicted RBP13.31□□□□□ -0.28
VPS29-211ENST00000553128 C1QBPQ07021 282 aaKnown RBP13.31□□□□□ -0.28
VPS29-211ENST00000553128 ZNF177Q13360 481 aaPredicted RBP13.31□□□□□ -0.28
VPS29-211ENST00000553128 ZNF284Q2VY69 593 aa13.31□□□□□ -0.28
VPS29-211ENST00000553128 SGO2Q562F6 1265 aa13.31□□□□□ -0.28
VPS29-211ENST00000553128 PIP5KL1Q5T9C9 394 aa13.31□□□□□ -0.28
VPS29-211ENST00000553128 OR6B2Q6IFH4 312 aa13.31□□□□□ -0.28
VPS29-211ENST00000553128 LGI2Q8N0V4 545 aa13.31□□□□□ -0.28
VPS29-211ENST00000553128 KCTD13Q8WZ19 329 aa13.31□□□□□ -0.28
VPS29-211ENST00000553128 EEF2KMTQ96G04 330 aa13.31□□□□□ -0.28
VPS29-211ENST00000553128 TMEM8AQ9HCN3 771 aa13.31□□□□□ -0.28
VPS29-211ENST00000553128 CNGB3Q9NQW8 809 aa13.31□□□□□ -0.28
VPS29-211ENST00000553128 KLF15Q9UIH9 416 aa13.31□□□□□ -0.28
VPS29-211ENST00000553128 ATXN7L1Q9ULK2 861 aaPredicted RBP13.31□□□□□ -0.28
VPS29-211ENST00000553128 TYW5A2RUC4 315 aaKnown RBP13.3□□□□□ -0.28
VPS29-211ENST00000553128 AFPP02771 609 aaKnown RBP13.3□□□□□ -0.28
VPS29-211ENST00000553128 CTSLP07711 333 aa13.3□□□□□ -0.28
VPS29-211ENST00000553128 TLE1Q04724 770 aa13.3□□□□□ -0.28
VPS29-211ENST00000553128 CUL4AQ13619 759 aa13.3□□□□□ -0.28
VPS29-211ENST00000553128 RAP1GAP2Q684P5 730 aa13.3□□□□□ -0.28
VPS29-211ENST00000553128 SEL1L3Q68CR1 1132 aa13.3□□□□□ -0.28
VPS29-211ENST00000553128 PMF1Q6P1K2 205 aa13.3□□□□□ -0.28
VPS29-211ENST00000553128 RBM44Q6ZP01 1051 aaKnown RBP13.3□□□□□ -0.28
VPS29-211ENST00000553128 SCML4Q8N228 414 aa13.3□□□□□ -0.28
VPS29-211ENST00000553128 ARL14Q8N4G2 192 aa13.3□□□□□ -0.28
VPS29-211ENST00000553128 ZNF548Q8NEK5 533 aaPredicted RBP13.3□□□□□ -0.28
VPS29-211ENST00000553128 WDR36Q8NI36 951 aaKnown RBP13.3□□□□□ -0.28
VPS29-211ENST00000553128 DQX1Q8TE96 717 aaKnown RBP13.3□□□□□ -0.28
VPS29-211ENST00000553128 OR8D1Q8WZ84 308 aa13.3□□□□□ -0.28
VPS29-211ENST00000553128 SGF29Q96ES7 293 aa13.3□□□□□ -0.28
VPS29-211ENST00000553128 SLC39A13Q96H72 371 aa13.3□□□□□ -0.28
VPS29-211ENST00000553128 DNAI2Q9GZS0 605 aa13.3□□□□□ -0.28
VPS29-211ENST00000553128 MAGEF1Q9HAY2 307 aa13.3□□□□□ -0.28
VPS29-211ENST00000553128 USP29Q9HBJ7 922 aa13.3□□□□□ -0.28
VPS29-211ENST00000553128 PREBQ9HCU5 417 aa13.3□□□□□ -0.28
VPS29-211ENST00000553128 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.3□□□□□ -0.28
VPS29-211ENST00000553128 ZFR2Q9UPR6 939 aaKnown RBP13.3□□□□□ -0.28
VPS29-211ENST00000553128 AHCTF1Q8WYP5 2266 aa13.3□□□□□ -0.28
VPS29-211ENST00000553128 EME2A4GXA9 379 aaPredicted RBP13.29□□□□□ -0.28
VPS29-211ENST00000553128 O00370 1275 aa13.29□□□□□ -0.28
VPS29-211ENST00000553128 CUTAO60888 179 aa13.29□□□□□ -0.28
VPS29-211ENST00000553128 PPP6R2O75170 966 aa13.29□□□□□ -0.28
VPS29-211ENST00000553128 CALCAP01258 141 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms