RNA–Protein interactions for RNA: ENST00000550914.6

PTCH1-221, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-221ENST00000550914 FAM46CQ5VWP2 391 aa13.25□□□□□ -0.29
PTCH1-221ENST00000550914 NAPEPLDQ6IQ20 393 aa13.25□□□□□ -0.29
PTCH1-221ENST00000550914 MARCH9Q86YJ5 346 aa13.25□□□□□ -0.29
PTCH1-221ENST00000550914 GATAD2AQ86YP4 633 aa13.25□□□□□ -0.29
PTCH1-221ENST00000550914 CCAR2Q8N163 923 aaKnown RBP13.25□□□□□ -0.29
PTCH1-221ENST00000550914 FRS2Q8WU20 508 aa13.25□□□□□ -0.29
PTCH1-221ENST00000550914 TSC1Q92574 1164 aa13.25□□□□□ -0.29
PTCH1-221ENST00000550914 NXPE2Q96DL1 559 aa13.25□□□□□ -0.29
PTCH1-221ENST00000550914 CNDP2Q96KP4 475 aaKnown RBP13.25□□□□□ -0.29
PTCH1-221ENST00000550914 UBE2TQ9NPD8 197 aaPredicted RBP13.25□□□□□ -0.29
PTCH1-221ENST00000550914 ASNSD1Q9NWL6 643 aa13.25□□□□□ -0.29
PTCH1-221ENST00000550914 CYTH4Q9UIA0 394 aa13.25□□□□□ -0.29
PTCH1-221ENST00000550914 MGAQ8IWI9 3026 aa13.25□□□□□ -0.29
PTCH1-221ENST00000550914 FLNBO75369 2602 aaKnown RBP13.25□□□□□ -0.29
PTCH1-221ENST00000550914 TDRD6O60522 2096 aaKnown RBP13.24□□□□□ -0.29
PTCH1-221ENST00000550914 DOCK4Q8N1I0 1966 aa13.24□□□□□ -0.29
PTCH1-221ENST00000550914 TBC1D3DA0A087WVF3 549 aa13.24□□□□□ -0.29
PTCH1-221ENST00000550914 TBC1D3IA0A087WXS9 549 aa13.24□□□□□ -0.29
PTCH1-221ENST00000550914 TBC1D3EA0A087X179 549 aa13.24□□□□□ -0.29
PTCH1-221ENST00000550914 TBC1D3KA0A087X1G2 549 aa13.24□□□□□ -0.29
PTCH1-221ENST00000550914 TBC1D3FA6NER0 549 aaPredicted RBP13.24□□□□□ -0.29
PTCH1-221ENST00000550914 TBC1D3LB9A6J9 549 aa13.24□□□□□ -0.29
PTCH1-221ENST00000550914 WNT9AO14904 365 aa13.24□□□□□ -0.29
PTCH1-221ENST00000550914 PLRG1O43660 514 aaKnown RBP13.24□□□□□ -0.29
PTCH1-221ENST00000550914 ATP9BO43861 1147 aa13.24□□□□□ -0.29
PTCH1-221ENST00000550914 FGFR1OPO95684 399 aaKnown RBP13.24□□□□□ -0.29
PTCH1-221ENST00000550914 TBC1D3HP0C7X1 549 aa13.24□□□□□ -0.29
PTCH1-221ENST00000550914 PDGFRAP16234 1089 aa13.24□□□□□ -0.29
PTCH1-221ENST00000550914 BMP6P22004 513 aa13.24□□□□□ -0.29
PTCH1-221ENST00000550914 GNA15P30679 374 aa13.24□□□□□ -0.29
PTCH1-221ENST00000550914 CCR1P32246 355 aa13.24□□□□□ -0.29
PTCH1-221ENST00000550914 ACADVLP49748 655 aa13.24□□□□□ -0.29
PTCH1-221ENST00000550914 PDCLQ13371 301 aa13.24□□□□□ -0.29
PTCH1-221ENST00000550914 MORC3Q14149 939 aa13.24□□□□□ -0.29
PTCH1-221ENST00000550914 CCDC157Q569K6 752 aa13.24□□□□□ -0.29
PTCH1-221ENST00000550914 PRAMEF14Q5SWL7 426 aa13.24□□□□□ -0.29
PTCH1-221ENST00000550914 C6orf118Q5T5N4 469 aa13.24□□□□□ -0.29
PTCH1-221ENST00000550914 SFMBT2Q5VUG0 894 aa13.24□□□□□ -0.29
PTCH1-221ENST00000550914 TBC1D3GQ6DHY5 549 aa13.24□□□□□ -0.29
PTCH1-221ENST00000550914 ISM2Q6H9L7 571 aa13.24□□□□□ -0.29
PTCH1-221ENST00000550914 TBC1D3CQ6IPX1 549 aa13.24□□□□□ -0.29
PTCH1-221ENST00000550914 CXorf57Q6NSI4 855 aaKnown RBP13.24□□□□□ -0.29
PTCH1-221ENST00000550914 PRPF39Q86UA1 669 aaKnown RBP13.24□□□□□ -0.29
PTCH1-221ENST00000550914 TRIM69Q86WT6 500 aa13.24□□□□□ -0.29
PTCH1-221ENST00000550914 TBC1D3Q8IZP1 549 aaPredicted RBP13.24□□□□□ -0.29
PTCH1-221ENST00000550914 CACTIN-AS1Q8N1I8 211 aa13.24□□□□□ -0.29
PTCH1-221ENST00000550914 OR8D1Q8WZ84 308 aa13.24□□□□□ -0.29
PTCH1-221ENST00000550914 LRIG1Q96JA1 1093 aa13.24□□□□□ -0.29
PTCH1-221ENST00000550914 SLC2A13Q96QE2 648 aa13.24□□□□□ -0.29
PTCH1-221ENST00000550914 ARHGAP20Q9P2F6 1191 aa13.24□□□□□ -0.29
PTCH1-221ENST00000550914 TRPM6Q9BX84 2022 aa13.23□□□□□ -0.29
PTCH1-221ENST00000550914 THAP12O43422 761 aa13.23□□□□□ -0.29
PTCH1-221ENST00000550914 HSF2BPO75031 334 aa13.23□□□□□ -0.29
PTCH1-221ENST00000550914 JUPP14923 745 aa13.23□□□□□ -0.29
PTCH1-221ENST00000550914 PPP2CBP62714 309 aa13.23□□□□□ -0.29
PTCH1-221ENST00000550914 PPP2CAP67775 309 aa13.23□□□□□ -0.29
PTCH1-221ENST00000550914 PITX1P78337 314 aaPredicted RBP13.23□□□□□ -0.29
PTCH1-221ENST00000550914 PAK1Q13153 545 aa13.23□□□□□ -0.29
PTCH1-221ENST00000550914 EFHC1Q5JVL4 640 aa13.23□□□□□ -0.29
PTCH1-221ENST00000550914 FBXL22Q6P050 247 aa13.23□□□□□ -0.29
PTCH1-221ENST00000550914 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.23□□□□□ -0.29
PTCH1-221ENST00000550914 KANSL1Q7Z3B3 1105 aa13.23□□□□□ -0.29
PTCH1-221ENST00000550914 EID2Q8N6I1 236 aa13.23□□□□□ -0.29
PTCH1-221ENST00000550914 ALG14Q96F25 216 aa13.23□□□□□ -0.29
PTCH1-221ENST00000550914 FEM1AQ9BSK4 669 aa13.23□□□□□ -0.29
PTCH1-221ENST00000550914 NRSN2Q9GZP1 204 aa13.23□□□□□ -0.29
PTCH1-221ENST00000550914 FAM204AQ9H8W3 233 aa13.23□□□□□ -0.29
PTCH1-221ENST00000550914 DDIT4Q9NX09 232 aa13.23□□□□□ -0.29
PTCH1-221ENST00000550914 SLC25A13Q9UJS0 675 aa13.23□□□□□ -0.29
PTCH1-221ENST00000550914 PPM1HQ9ULR3 514 aa13.23□□□□□ -0.29
PTCH1-221ENST00000550914 CTNND2Q9UQB3 1225 aa13.23□□□□□ -0.29
PTCH1-221ENST00000550914 ATMQ13315 3056 aa13.22□□□□□ -0.29
PTCH1-221ENST00000550914 C1QTNF3-AMACRE9PGA6 284 aa13.22□□□□□ -0.29
PTCH1-221ENST00000550914 PLK4O00444 970 aa13.22□□□□□ -0.29
PTCH1-221ENST00000550914 MCF2LO15068 1137 aa13.22□□□□□ -0.29
PTCH1-221ENST00000550914 RNGTTO60942 597 aaKnown RBP13.22□□□□□ -0.29
PTCH1-221ENST00000550914 CLDN11O75508 207 aa13.22□□□□□ -0.29
PTCH1-221ENST00000550914 VAV1P15498 845 aa13.22□□□□□ -0.29
PTCH1-221ENST00000550914 ABCG1P45844 678 aa13.22□□□□□ -0.29
PTCH1-221ENST00000550914 SNX16P57768 344 aa13.22□□□□□ -0.29
PTCH1-221ENST00000550914 DNAJC3Q13217 504 aa13.22□□□□□ -0.29
PTCH1-221ENST00000550914 RTP5Q14D33 572 aa13.22□□□□□ -0.29
PTCH1-221ENST00000550914 TAF5Q15542 800 aa13.22□□□□□ -0.29
PTCH1-221ENST00000550914 C5orf22Q49AR2 442 aa13.22□□□□□ -0.29
PTCH1-221ENST00000550914 SETMARQ53H47 684 aaPredicted RBP13.22□□□□□ -0.29
PTCH1-221ENST00000550914 FBXL19Q6PCT2 694 aa13.22□□□□□ -0.29
PTCH1-221ENST00000550914 TRIM65Q6PJ69 517 aa13.22□□□□□ -0.29
PTCH1-221ENST00000550914 CIR1Q86X95 450 aaPredicted RBP13.22□□□□□ -0.29
PTCH1-221ENST00000550914 DEFB106AQ8N104 65 aa13.22□□□□□ -0.29
PTCH1-221ENST00000550914 RNF34Q969K3 372 aa13.22□□□□□ -0.29
PTCH1-221ENST00000550914 PPP1R13BQ96KQ4 1090 aa13.22□□□□□ -0.29
PTCH1-221ENST00000550914 RPRD1AQ96P16 312 aaPredicted RBP13.22□□□□□ -0.29
PTCH1-221ENST00000550914 SRRTQ9BXP5 876 aaKnown RBP13.22□□□□□ -0.29
PTCH1-221ENST00000550914 PREBQ9HCU5 417 aa13.22□□□□□ -0.29
PTCH1-221ENST00000550914 TMEM51Q9NW97 253 aa13.22□□□□□ -0.29
PTCH1-221ENST00000550914 PCDHGC3Q9UN70 934 aa13.22□□□□□ -0.29
PTCH1-221ENST00000550914 TBC1D30Q9Y2I9 924 aa13.22□□□□□ -0.29
PTCH1-221ENST00000550914 OR51B4Q9Y5P0 310 aa13.22□□□□□ -0.29
PTCH1-221ENST00000550914 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.21□□□□□ -0.29
PTCH1-221ENST00000550914 PRAMEF26H0Y7S4 382 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms