RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 POM121L1PQ3SYA9 428 aa13.17□□□□□ -0.3
SCAF11-208ENST00000546534 HS1BP3Q53T59 392 aa13.17□□□□□ -0.3
SCAF11-208ENST00000546534 SGO2Q562F6 1265 aa13.17□□□□□ -0.3
SCAF11-208ENST00000546534 KIAA1614Q5VZ46 1190 aa13.17□□□□□ -0.3
SCAF11-208ENST00000546534 ERICH6BQ5W0A0 696 aa13.17□□□□□ -0.3
SCAF11-208ENST00000546534 RNF219Q5W0B1 726 aaPredicted RBP13.17□□□□□ -0.3
SCAF11-208ENST00000546534 RESP18Q5W5W9 173 aa13.17□□□□□ -0.3
SCAF11-208ENST00000546534 KRT39Q6A163 491 aa13.17□□□□□ -0.3
SCAF11-208ENST00000546534 CCDC117Q8IWD4 279 aaPredicted RBP13.17□□□□□ -0.3
SCAF11-208ENST00000546534 CEP57L1Q8IYX8 460 aa13.17□□□□□ -0.3
SCAF11-208ENST00000546534 APCDD1Q8J025 514 aa13.17□□□□□ -0.3
SCAF11-208ENST00000546534 KCTD13Q8WZ19 329 aa13.17□□□□□ -0.3
SCAF11-208ENST00000546534 KLHDC7BQ96G42 594 aa13.17□□□□□ -0.3
SCAF11-208ENST00000546534 NUCKS1Q9H1E3 243 aaKnown RBP13.17□□□□□ -0.3
SCAF11-208ENST00000546534 OSBPL2Q9H1P3 480 aa13.17□□□□□ -0.3
SCAF11-208ENST00000546534 KDM4CQ9H3R0 1056 aa13.17□□□□□ -0.3
SCAF11-208ENST00000546534 CAAP1Q9H8G2 361 aa13.17□□□□□ -0.3
SCAF11-208ENST00000546534 UPF2Q9HAU5 1272 aaKnown RBP13.17□□□□□ -0.3
SCAF11-208ENST00000546534 CNGB3Q9NQW8 809 aa13.17□□□□□ -0.3
SCAF11-208ENST00000546534 FAM13BQ9NYF5 915 aa13.17□□□□□ -0.3
SCAF11-208ENST00000546534 CEP83Q9Y592 693 aa13.17□□□□□ -0.3
SCAF11-208ENST00000546534 TYW5A2RUC4 315 aaKnown RBP13.16□□□□□ -0.3
SCAF11-208ENST00000546534 BHMG1C9JSJ3 638 aaPredicted RBP13.16□□□□□ -0.3
SCAF11-208ENST00000546534 PRAMEF26H0Y7S4 382 aa13.16□□□□□ -0.3
SCAF11-208ENST00000546534 K7ENP7 123 aa13.16□□□□□ -0.3
SCAF11-208ENST00000546534 PLRG1O43660 514 aaKnown RBP13.16□□□□□ -0.3
SCAF11-208ENST00000546534 LUC7L3O95232 432 aaKnown RBP13.16□□□□□ -0.3
SCAF11-208ENST00000546534 GIMD1P0DJR0 217 aa13.16□□□□□ -0.3
SCAF11-208ENST00000546534 GTF2H1P32780 548 aa13.16□□□□□ -0.3
SCAF11-208ENST00000546534 NUMBP49757 651 aa13.16□□□□□ -0.3
SCAF11-208ENST00000546534 ENPEPQ07075 957 aa13.16□□□□□ -0.3
SCAF11-208ENST00000546534 DCAF6Q58WW2 860 aa13.16□□□□□ -0.3
SCAF11-208ENST00000546534 MS4A13Q5J8X5 152 aa13.16□□□□□ -0.3
SCAF11-208ENST00000546534 INO80CQ6PI98 192 aaPredicted RBP13.16□□□□□ -0.3
SCAF11-208ENST00000546534 TRIM69Q86WT6 500 aa13.16□□□□□ -0.3
SCAF11-208ENST00000546534 FBXL13Q8NEE6 735 aa13.16□□□□□ -0.3
SCAF11-208ENST00000546534 PAGE5Q96GU1 130 aa13.16□□□□□ -0.3
SCAF11-208ENST00000546534 FCRL2Q96LA5 508 aaPredicted RBP13.16□□□□□ -0.3
SCAF11-208ENST00000546534 DDX50Q9BQ39 737 aaKnown RBP13.16□□□□□ -0.3
SCAF11-208ENST00000546534 THSD1Q9NS62 852 aa13.16□□□□□ -0.3
SCAF11-208ENST00000546534 RAB20Q9NX57 234 aa13.16□□□□□ -0.3
SCAF11-208ENST00000546534 SARDHQ9UL12 918 aa13.16□□□□□ -0.3
SCAF11-208ENST00000546534 PCDHA7Q9UN72 937 aa13.16□□□□□ -0.3
SCAF11-208ENST00000546534 LY6G6EA0A0G2JKS1 128 aa13.15□□□□□ -0.3
SCAF11-208ENST00000546534 A0A1W2PNU3 283 aaPredicted RBP13.15□□□□□ -0.3
SCAF11-208ENST00000546534 C3orf80F5H4A9 247 aa13.15□□□□□ -0.3
SCAF11-208ENST00000546534 PIK3R2O00459 728 aa13.15□□□□□ -0.3
SCAF11-208ENST00000546534 SLC7A4O43246 635 aa13.15□□□□□ -0.3
SCAF11-208ENST00000546534 ACTN4O43707 911 aaKnown RBP13.15□□□□□ -0.3
SCAF11-208ENST00000546534 LTFP02788 710 aa13.15□□□□□ -0.3
SCAF11-208ENST00000546534 THEGLP0DJG4 465 aa13.15□□□□□ -0.3
SCAF11-208ENST00000546534 SETSIPP0DME0 302 aa13.15□□□□□ -0.3
SCAF11-208ENST00000546534 CD19P15391 556 aa13.15□□□□□ -0.3
SCAF11-208ENST00000546534 PSMC2P35998 433 aaKnown RBP13.15□□□□□ -0.3
SCAF11-208ENST00000546534 RGS7P49802 495 aa13.15□□□□□ -0.3
SCAF11-208ENST00000546534 CSRP3P50461 194 aa13.15□□□□□ -0.3
SCAF11-208ENST00000546534 MXI1P50539 228 aa13.15□□□□□ -0.3
SCAF11-208ENST00000546534 KCNMA1Q12791 1236 aa13.15□□□□□ -0.3
SCAF11-208ENST00000546534 CNTN1Q12860 1018 aa13.15□□□□□ -0.3
SCAF11-208ENST00000546534 NFIL3Q16649 462 aa13.15□□□□□ -0.3
SCAF11-208ENST00000546534 SETMARQ53H47 684 aaPredicted RBP13.15□□□□□ -0.3
SCAF11-208ENST00000546534 AGBL4Q5VU57 503 aa13.15□□□□□ -0.3
SCAF11-208ENST00000546534 PRICKLE2Q7Z3G6 844 aa13.15□□□□□ -0.3
SCAF11-208ENST00000546534 FRS2Q8WU20 508 aa13.15□□□□□ -0.3
SCAF11-208ENST00000546534 IRGQQ8WZA9 623 aa13.15□□□□□ -0.3
SCAF11-208ENST00000546534 EEF2KMTQ96G04 330 aa13.15□□□□□ -0.3
SCAF11-208ENST00000546534 APOLD1Q96LR9 279 aa13.15□□□□□ -0.3
SCAF11-208ENST00000546534 SPAG5Q96R06 1193 aa13.15□□□□□ -0.3
SCAF11-208ENST00000546534 MYOCQ99972 504 aa13.15□□□□□ -0.3
SCAF11-208ENST00000546534 ABCG4Q9H172 646 aa13.15□□□□□ -0.3
SCAF11-208ENST00000546534 KLHL11Q9NVR0 708 aa13.15□□□□□ -0.3
SCAF11-208ENST00000546534 U3KQA8 63 aa13.15□□□□□ -0.3
SCAF11-208ENST00000546534 O00370 1275 aa13.14□□□□□ -0.31
SCAF11-208ENST00000546534 PIAS2O75928 621 aa13.14□□□□□ -0.31
SCAF11-208ENST00000546534 MOCS2O96007 188 aaPredicted RBP13.14□□□□□ -0.31
SCAF11-208ENST00000546534 GP1BAP07359 652 aa13.14□□□□□ -0.31
SCAF11-208ENST00000546534 PRLRP16471 622 aa13.14□□□□□ -0.31
SCAF11-208ENST00000546534 NNMTP40261 264 aa13.14□□□□□ -0.31
SCAF11-208ENST00000546534 MCCD1P59942 119 aaPredicted RBP13.14□□□□□ -0.31
SCAF11-208ENST00000546534 SKOR1P84550 965 aa13.14□□□□□ -0.31
SCAF11-208ENST00000546534 ADAM9Q13443 819 aa13.14□□□□□ -0.31
SCAF11-208ENST00000546534 ISXQ2M1V0 245 aa13.14□□□□□ -0.31
SCAF11-208ENST00000546534 C3orf38Q5JPI3 329 aa13.14□□□□□ -0.31
SCAF11-208ENST00000546534 PMF1Q6P1K2 205 aa13.14□□□□□ -0.31
SCAF11-208ENST00000546534 IGF2-ASQ6U949 168 aa13.14□□□□□ -0.31
SCAF11-208ENST00000546534 LGI2Q8N0V4 545 aa13.14□□□□□ -0.31
SCAF11-208ENST00000546534 TMEM145Q8NBT3 493 aa13.14□□□□□ -0.31
SCAF11-208ENST00000546534 OR13H1Q8NG92 308 aa13.14□□□□□ -0.31
SCAF11-208ENST00000546534 CLEC4CQ8WTT0 213 aa13.14□□□□□ -0.31
SCAF11-208ENST00000546534 INTS4Q96HW7 963 aaKnown RBP13.14□□□□□ -0.31
SCAF11-208ENST00000546534 SLC46A1Q96NT5 459 aa13.14□□□□□ -0.31
SCAF11-208ENST00000546534 XPO7Q9UIA9 1087 aaKnown RBP13.14□□□□□ -0.31
SCAF11-208ENST00000546534 SATB2Q9UPW6 733 aa13.14□□□□□ -0.31
SCAF11-208ENST00000546534 MAPK8IP1Q9UQF2 711 aa13.14□□□□□ -0.31
SCAF11-208ENST00000546534 TLR6Q9Y2C9 796 aa13.14□□□□□ -0.31
SCAF11-208ENST00000546534 SLC31A1O15431 190 aa13.13□□□□□ -0.31
SCAF11-208ENST00000546534 LZTS3O60299 673 aaPredicted RBP13.13□□□□□ -0.31
SCAF11-208ENST00000546534 FYNP06241 537 aa13.13□□□□□ -0.31
SCAF11-208ENST00000546534 VDRP11473 427 aa13.13□□□□□ -0.31
SCAF11-208ENST00000546534 RBMS1P29558 406 aaKnown RBP13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms