RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 RASA4BC9J798 803 aa16.4■□□□□ 0.22
PRPF40A-212ENST00000545856 RASA4O43374 803 aa16.4■□□□□ 0.22
PRPF40A-212ENST00000545856 TSPAN3O60637 253 aa16.4■□□□□ 0.22
PRPF40A-212ENST00000545856 STK10O94804 968 aaKnown RBP16.4■□□□□ 0.22
PRPF40A-212ENST00000545856 GDI1P31150 447 aa16.4■□□□□ 0.22
PRPF40A-212ENST00000545856 VASPP50552 380 aaPredicted RBP16.4■□□□□ 0.22
PRPF40A-212ENST00000545856 EIF3EP60228 445 aaKnown RBP16.4■□□□□ 0.22
PRPF40A-212ENST00000545856 SLC20A2Q08357 652 aa16.4■□□□□ 0.22
PRPF40A-212ENST00000545856 PRKD1Q15139 912 aaPredicted RBP16.4■□□□□ 0.22
PRPF40A-212ENST00000545856 TPGS1Q6ZTW0 290 aa16.4■□□□□ 0.22
PRPF40A-212ENST00000545856 TFAP2DQ7Z6R9 452 aa16.4■□□□□ 0.22
PRPF40A-212ENST00000545856 TMEM25Q86YD3 366 aa16.4■□□□□ 0.22
PRPF40A-212ENST00000545856 ETFBKMTQ8IXQ9 262 aa16.4■□□□□ 0.22
PRPF40A-212ENST00000545856 AHI1Q8N157 1196 aa16.4■□□□□ 0.22
PRPF40A-212ENST00000545856 CFAP52Q8N1V2 620 aa16.4■□□□□ 0.22
PRPF40A-212ENST00000545856 MMGT1Q8N4V1 131 aa16.4■□□□□ 0.22
PRPF40A-212ENST00000545856 TTC16Q8NEE8 873 aa16.4■□□□□ 0.22
PRPF40A-212ENST00000545856 CSGALNACT1Q8TDX6 532 aa16.4■□□□□ 0.22
PRPF40A-212ENST00000545856 ATXN2LQ8WWM7 1075 aaKnown RBP16.4■□□□□ 0.22
PRPF40A-212ENST00000545856 MAGOHBQ96A72 148 aaKnown RBP16.4■□□□□ 0.22
PRPF40A-212ENST00000545856 RTP4Q96DX8 246 aa16.4■□□□□ 0.22
PRPF40A-212ENST00000545856 PPP1R2P1Q96PQ5 205 aa16.4■□□□□ 0.22
PRPF40A-212ENST00000545856 KXD1Q9BQD3 176 aa16.4■□□□□ 0.22
PRPF40A-212ENST00000545856 ACE2Q9BYF1 805 aaPredicted RBP16.4■□□□□ 0.22
PRPF40A-212ENST00000545856 LINC00597Q9H2U6 94 aa16.4■□□□□ 0.22
PRPF40A-212ENST00000545856 KCNK12Q9HB15 430 aa16.4■□□□□ 0.22
PRPF40A-212ENST00000545856 C5orf42Q9H799 3197 aa16.4■□□□□ 0.22
PRPF40A-212ENST00000545856 TCRBV7S2A1N4TA0A589 114 aa16.39■□□□□ 0.21
PRPF40A-212ENST00000545856 XIRP2A4UGR9 3374 aa16.39■□□□□ 0.21
PRPF40A-212ENST00000545856 NEDD8-MDP1E9PL57 170 aa16.39■□□□□ 0.21
PRPF40A-212ENST00000545856 SLU7O95391 586 aaKnown RBP16.39■□□□□ 0.21
PRPF40A-212ENST00000545856 PECAM1P16284 738 aaPredicted RBP16.39■□□□□ 0.21
PRPF40A-212ENST00000545856 COILP38432 576 aaPredicted RBP16.39■□□□□ 0.21
PRPF40A-212ENST00000545856 TNK2Q07912 1038 aa16.39■□□□□ 0.21
PRPF40A-212ENST00000545856 IL10RBQ08334 325 aa16.39■□□□□ 0.21
PRPF40A-212ENST00000545856 SERINC3Q13530 473 aa16.39■□□□□ 0.21
PRPF40A-212ENST00000545856 HEATR6Q6AI08 1181 aaKnown RBP16.39■□□□□ 0.21
PRPF40A-212ENST00000545856 CCDC137Q6PK04 289 aaKnown RBP16.39■□□□□ 0.21
PRPF40A-212ENST00000545856 KIAA0907Q7Z7F0 614 aaPredicted RBP16.39■□□□□ 0.21
PRPF40A-212ENST00000545856 CARNMT1Q8N4J0 409 aa16.39■□□□□ 0.21
PRPF40A-212ENST00000545856 NSMCE1Q8WV22 266 aa16.39■□□□□ 0.21
PRPF40A-212ENST00000545856 ARHGEF2Q92974 986 aaKnown RBP16.39■□□□□ 0.21
PRPF40A-212ENST00000545856 MYEOVQ96EZ4 313 aa16.39■□□□□ 0.21
PRPF40A-212ENST00000545856 ASIC4Q96FT7 647 aa16.39■□□□□ 0.21
PRPF40A-212ENST00000545856 NOL6Q9H6R4 1146 aaKnown RBP16.39■□□□□ 0.21
PRPF40A-212ENST00000545856 C8orf33Q9H7E9 229 aaPredicted RBP16.39■□□□□ 0.21
PRPF40A-212ENST00000545856 HPS4Q9NQG7 708 aa16.39■□□□□ 0.21
PRPF40A-212ENST00000545856 SLC2A4RGQ9NR83 387 aa16.39■□□□□ 0.21
PRPF40A-212ENST00000545856 NCOR1O75376 2440 aa16.39■□□□□ 0.21
PRPF40A-212ENST00000545856 EFCAB8A8MWE9 144 aa16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 TIMM44O43615 452 aa16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 ASLP04424 464 aa16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 ACTN2P35609 894 aa16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 HSPA9P38646 679 aaKnown RBP16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 IRAK1P51617 712 aa16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 SGSHP51688 502 aa16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 IFI35P80217 286 aaPredicted RBP16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 HNRNPDQ14103 355 aaKnown RBP16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 INO80DQ53TQ3 878 aaPredicted RBP16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 RETSATQ6NUM9 610 aa16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 CCDC13Q8IYE1 715 aa16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 BBS5Q8N3I7 341 aa16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 KDM1BQ8NB78 822 aa16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 RUBCNQ92622 972 aa16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 AP1M1Q9BXS5 423 aa16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 PLA2G2FQ9BZM2 168 aa16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 SLC39A8Q9C0K1 460 aa16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 MUC3BQ9H195 1237 aa16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 EBF3Q9H4W6 596 aa16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 RRAGDQ9NQL2 400 aaPredicted RBP16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 RBM12Q9NTZ6 932 aaKnown RBP16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 NDFIP2Q9NV92 336 aa16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 DEC1Q9P2X7 70 aa16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 IPO11Q9UI26 975 aaKnown RBP16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 DNPEPQ9ULA0 475 aa16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 ZNF148Q9UQR1 794 aa16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 R3HDM2Q9Y2K5 976 aaKnown RBP16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 OR51B4Q9Y5P0 310 aa16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 F5P12259 2224 aa16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 FAM187AA6NFU0 413 aa16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 H7C0C1 242 aa16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 TRDMT1O14717 391 aaKnown RBP16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 MATN3O15232 486 aa16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 KDELR3O43731 214 aa16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 PRAMEF11O60813 436 aa16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 ECEL1O95672 775 aa16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 ATP5OP48047 213 aa16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 DGKGP49619 791 aa16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 RENBPP51606 427 aa16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 CLCN6P51797 869 aa16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 SLC10A2Q12908 348 aaPredicted RBP16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 TDGQ13569 410 aa16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 P3H1Q32P28 736 aa16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 PLEKHG6Q3KR16 790 aa16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 DARS2Q6PI48 645 aaKnown RBP16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 CCDC105Q8IYK2 499 aa16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 ALLCQ8N6M5 410 aa16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 C1orf54Q8WWF1 131 aa16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 HTR3CQ8WXA8 447 aa16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 MAML1Q92585 1016 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms