RNA–Protein interactions for RNA: ENST00000543185.5

HDAC4-215, Transcript of histone deacetylase 4, humanhuman

TSL 5 BASIC

Gene HDAC4, Length 8,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-215ENST00000543185 TMEM143Q96AN5 459 aa19.67■□□□□ 0.74
HDAC4-215ENST00000543185 KBTBD4Q9NVX7 518 aa19.67■□□□□ 0.74
HDAC4-215ENST00000543185 SMYD1Q8NB12 490 aa19.67■□□□□ 0.74
HDAC4-215ENST00000543185 PHF10Q8WUB8 498 aaKnown RBP19.67■□□□□ 0.74
HDAC4-215ENST00000543185 RIPK1Q13546 671 aa19.67■□□□□ 0.74
HDAC4-215ENST00000543185 ALG11Q2TAA5 492 aa19.67■□□□□ 0.74
HDAC4-215ENST00000543185 PROSER1Q86XN7 944 aa19.67■□□□□ 0.74
HDAC4-215ENST00000543185 OR6J1Q8NGC5 347 aa19.67■□□□□ 0.74
HDAC4-215ENST00000543185 SEPT5Q99719 369 aaPredicted RBP19.67■□□□□ 0.74
HDAC4-215ENST00000543185 ZNF232Q9UNY5 417 aa19.67■□□□□ 0.74
HDAC4-215ENST00000543185 SLC2A4P14672 509 aa19.67■□□□□ 0.74
HDAC4-215ENST00000543185 SPOCD1Q6ZMY3 1216 aa19.67■□□□□ 0.74
HDAC4-215ENST00000543185 TCAIMQ8N3R3 496 aa19.67■□□□□ 0.74
HDAC4-215ENST00000543185 ITGA4P13612 1032 aa19.66■□□□□ 0.74
HDAC4-215ENST00000543185 GSSP48637 474 aa19.66■□□□□ 0.74
HDAC4-215ENST00000543185 PNPT1Q8TCS8 783 aaKnown RBP19.66■□□□□ 0.74
HDAC4-215ENST00000543185 MED8Q96G25 268 aa19.66■□□□□ 0.74
HDAC4-215ENST00000543185 C1QTNF1Q9BXJ1 281 aa19.66■□□□□ 0.74
HDAC4-215ENST00000543185 PCDHA3Q9Y5H8 950 aa19.66■□□□□ 0.74
HDAC4-215ENST00000543185 SERPINF2P08697 491 aa19.66■□□□□ 0.74
HDAC4-215ENST00000543185 MAPTP10636 758 aaKnown RBP19.66■□□□□ 0.74
HDAC4-215ENST00000543185 CPT1AP50416 773 aa19.66■□□□□ 0.74
HDAC4-215ENST00000543185 CYP4F12Q9HCS2 524 aa19.66■□□□□ 0.74
HDAC4-215ENST00000543185 PLOD3O60568 738 aa19.66■□□□□ 0.74
HDAC4-215ENST00000543185 RPL22P35268 128 aaKnown RBP19.66■□□□□ 0.74
HDAC4-215ENST00000543185 TMEM132BQ14DG7 1078 aa19.66■□□□□ 0.74
HDAC4-215ENST00000543185 RBM44Q6ZP01 1051 aaKnown RBP19.66■□□□□ 0.74
HDAC4-215ENST00000543185 ANKRD13AQ8IZ07 590 aa19.66■□□□□ 0.74
HDAC4-215ENST00000543185 SNIP1Q8TAD8 396 aaKnown RBP19.66■□□□□ 0.74
HDAC4-215ENST00000543185 MAGEE2Q8TD90 523 aaPredicted RBP19.66■□□□□ 0.74
HDAC4-215ENST00000543185 MCOLN3Q8TDD5 553 aa19.66■□□□□ 0.74
HDAC4-215ENST00000543185 ATG4AQ8WYN0 398 aa19.66■□□□□ 0.74
HDAC4-215ENST00000543185 FOXN3O00409 490 aaPredicted RBP19.66■□□□□ 0.74
HDAC4-215ENST00000543185 LRIG2O94898 1065 aa19.66■□□□□ 0.74
HDAC4-215ENST00000543185 CDH4P55283 916 aa19.66■□□□□ 0.74
HDAC4-215ENST00000543185 ITGA11Q9UKX5 1188 aa19.66■□□□□ 0.74
HDAC4-215ENST00000543185 MTF2Q9Y483 593 aaPredicted RBP19.66■□□□□ 0.74
HDAC4-215ENST00000543185 CHST10O43529 356 aa19.66■□□□□ 0.74
HDAC4-215ENST00000543185 HBP1O60381 514 aa19.66■□□□□ 0.74
HDAC4-215ENST00000543185 CPSF4O95639 269 aaKnown RBP19.66■□□□□ 0.74
HDAC4-215ENST00000543185 CCNIQ14094 377 aa19.66■□□□□ 0.74
HDAC4-215ENST00000543185 LZTR1Q8N653 840 aa19.66■□□□□ 0.74
HDAC4-215ENST00000543185 TATDN2Q93075 761 aa19.66■□□□□ 0.74
HDAC4-215ENST00000543185 NACC2Q96BF6 587 aa19.66■□□□□ 0.74
HDAC4-215ENST00000543185 CLTCQ00610 1675 aaKnown RBP19.66■□□□□ 0.74
HDAC4-215ENST00000543185 POLRMTO00411 1230 aaKnown RBP19.66■□□□□ 0.74
HDAC4-215ENST00000543185 FGRP09769 529 aa19.66■□□□□ 0.74
HDAC4-215ENST00000543185 ACTL9Q8TC94 416 aa19.66■□□□□ 0.74
HDAC4-215ENST00000543185 CD101Q93033 1021 aa19.66■□□□□ 0.74
HDAC4-215ENST00000543185 ENTPD4Q9Y227 616 aa19.66■□□□□ 0.74
HDAC4-215ENST00000543185 CPS1P31327 1500 aa19.65■□□□□ 0.74
HDAC4-215ENST00000543185 TXNP10599 105 aaKnown RBP19.65■□□□□ 0.74
HDAC4-215ENST00000543185 HERVK_113P62684 666 aa19.65■□□□□ 0.74
HDAC4-215ENST00000543185 PHACTR4Q8IZ21 702 aa19.65■□□□□ 0.74
HDAC4-215ENST00000543185 OPLAHO14841 1288 aa19.65■□□□□ 0.74
HDAC4-215ENST00000543185 PLET1Q6UQ28 207 aa19.65■□□□□ 0.74
HDAC4-215ENST00000543185 SIX5Q8N196 739 aa19.65■□□□□ 0.74
HDAC4-215ENST00000543185 PPLO60437 1756 aa19.65■□□□□ 0.74
HDAC4-215ENST00000543185 DNAJA2O60884 412 aa19.65■□□□□ 0.74
HDAC4-215ENST00000543185 CYP2F1P24903 491 aa19.65■□□□□ 0.74
HDAC4-215ENST00000543185 LHX1P48742 406 aa19.65■□□□□ 0.74
HDAC4-215ENST00000543185 CACNB2Q08289 660 aaPredicted RBP19.65■□□□□ 0.74
HDAC4-215ENST00000543185 CSHL1Q14406 222 aa19.65■□□□□ 0.74
HDAC4-215ENST00000543185 PDK4Q16654 411 aa19.65■□□□□ 0.74
HDAC4-215ENST00000543185 SNX32Q86XE0 403 aa19.65■□□□□ 0.74
HDAC4-215ENST00000543185 POMGNT2Q8NAT1 580 aa19.65■□□□□ 0.74
HDAC4-215ENST00000543185 SUN5Q8TC36 379 aa19.65■□□□□ 0.74
HDAC4-215ENST00000543185 GSDMCQ9BYG8 508 aa19.65■□□□□ 0.74
HDAC4-215ENST00000543185 CARD8Q9Y2G2 431 aa19.65■□□□□ 0.74
HDAC4-215ENST00000543185 PCDHGA4Q9Y5G9 962 aa19.65■□□□□ 0.74
HDAC4-215ENST00000543185 RGSL1A5PLK6 1076 aa19.65■□□□□ 0.74
HDAC4-215ENST00000543185 PGRMC2O15173 223 aa19.65■□□□□ 0.74
HDAC4-215ENST00000543185 TUBA1BP68363 451 aa19.65■□□□□ 0.74
HDAC4-215ENST00000543185 TUBA1AQ71U36 451 aa19.65■□□□□ 0.74
HDAC4-215ENST00000543185 WDR49Q8IV35 697 aa19.65■□□□□ 0.74
HDAC4-215ENST00000543185 TMIEQ8NEW7 156 aa19.65■□□□□ 0.74
HDAC4-215ENST00000543185 FAM172AQ8WUF8 416 aa19.65■□□□□ 0.74
HDAC4-215ENST00000543185 ACOT12Q8WYK0 555 aa19.65■□□□□ 0.74
HDAC4-215ENST00000543185 GMPPBQ9Y5P6 360 aa19.65■□□□□ 0.74
HDAC4-215ENST00000543185 ZNF879B4DU55 563 aa19.65■□□□□ 0.74
HDAC4-215ENST00000543185 GH1P01241 217 aa19.65■□□□□ 0.74
HDAC4-215ENST00000543185 MFSD4BQ5TF39 518 aa19.65■□□□□ 0.74
HDAC4-215ENST00000543185 OLFML2AQ68BL7 652 aa19.65■□□□□ 0.74
HDAC4-215ENST00000543185 EMC3Q9P0I2 261 aa19.65■□□□□ 0.74
HDAC4-215ENST00000543185 PCYOX1Q9UHG3 505 aa19.65■□□□□ 0.74
HDAC4-215ENST00000543185 UBQLN1Q9UMX0 589 aaKnown RBP19.65■□□□□ 0.74
HDAC4-215ENST00000543185 TTC7BQ86TV6 843 aa19.65■□□□□ 0.74
HDAC4-215ENST00000543185 MEIOBQ8N635 442 aa19.65■□□□□ 0.74
HDAC4-215ENST00000543185 VMP1Q96GC9 406 aa19.65■□□□□ 0.74
HDAC4-215ENST00000543185 A0A0B4J269 797 aa19.65■□□□□ 0.74
HDAC4-215ENST00000543185 BST2Q10589 180 aaKnown RBP19.65■□□□□ 0.74
HDAC4-215ENST00000543185 TUBB3Q13509 450 aa19.65■□□□□ 0.74
HDAC4-215ENST00000543185 RAB43Q86YS6 212 aa19.65■□□□□ 0.74
HDAC4-215ENST00000543185 ZNF540Q8NDQ6 660 aa19.65■□□□□ 0.74
HDAC4-215ENST00000543185 RFT1Q96AA3 541 aa19.65■□□□□ 0.74
HDAC4-215ENST00000543185 TMEM159Q96B96 161 aa19.65■□□□□ 0.74
HDAC4-215ENST00000543185 MRPL57Q9BQC6 102 aaKnown RBP19.65■□□□□ 0.74
HDAC4-215ENST00000543185 AAASQ9NRG9 546 aa19.65■□□□□ 0.74
HDAC4-215ENST00000543185 ALKQ9UM73 1620 aa19.65■□□□□ 0.74
HDAC4-215ENST00000543185 BBIP1A8MTZ0 92 aa19.64■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms