RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 MT-CO3P00414 261 aa18.36■□□□□ 0.53
CLSTN3-214ENST00000542663 IGLV3-25P01717 112 aa18.36■□□□□ 0.53
CLSTN3-214ENST00000542663 PDGFRAP16234 1089 aa18.36■□□□□ 0.53
CLSTN3-214ENST00000542663 NUDT1P36639 197 aa18.36■□□□□ 0.53
CLSTN3-214ENST00000542663 KCNH2Q12809 1159 aa18.36■□□□□ 0.53
CLSTN3-214ENST00000542663 STAT4Q14765 748 aa18.36■□□□□ 0.53
CLSTN3-214ENST00000542663 ZC3H12AQ5D1E8 599 aaKnown RBP18.36■□□□□ 0.53
CLSTN3-214ENST00000542663 ANKRD40Q6AI12 368 aa18.36■□□□□ 0.53
CLSTN3-214ENST00000542663 CHSY1Q86X52 802 aa18.36■□□□□ 0.53
CLSTN3-214ENST00000542663 CIR1Q86X95 450 aaPredicted RBP18.36■□□□□ 0.53
CLSTN3-214ENST00000542663 CCAR2Q8N163 923 aaKnown RBP18.36■□□□□ 0.53
CLSTN3-214ENST00000542663 FAM149B1Q96BN6 582 aa18.36■□□□□ 0.53
CLSTN3-214ENST00000542663 PRMT1Q99873 361 aaKnown RBP18.36■□□□□ 0.53
CLSTN3-214ENST00000542663 UCKL1Q9NWZ5 548 aa18.36■□□□□ 0.53
CLSTN3-214ENST00000542663 MYO18BQ8IUG5 2567 aa18.35■□□□□ 0.53
CLSTN3-214ENST00000542663 TRIM49BA6NDI0 452 aa18.35■□□□□ 0.53
CLSTN3-214ENST00000542663 ERVH48-1M5A8F1 160 aa18.35■□□□□ 0.53
CLSTN3-214ENST00000542663 ZNF202O95125 648 aa18.35■□□□□ 0.53
CLSTN3-214ENST00000542663 HSP90AA1P07900 732 aaKnown RBP18.35■□□□□ 0.53
CLSTN3-214ENST00000542663 GIMD1P0DJR0 217 aa18.35■□□□□ 0.53
CLSTN3-214ENST00000542663 NNMTP40261 264 aa18.35■□□□□ 0.53
CLSTN3-214ENST00000542663 GPD2P43304 727 aa18.35■□□□□ 0.53
CLSTN3-214ENST00000542663 FMO5P49326 533 aa18.35■□□□□ 0.53
CLSTN3-214ENST00000542663 PLK1P53350 603 aa18.35■□□□□ 0.53
CLSTN3-214ENST00000542663 TAS2R38P59533 333 aa18.35■□□□□ 0.53
CLSTN3-214ENST00000542663 PITX1P78337 314 aaPredicted RBP18.35■□□□□ 0.53
CLSTN3-214ENST00000542663 FKBP3Q00688 224 aaKnown RBP18.35■□□□□ 0.53
CLSTN3-214ENST00000542663 E2F1Q01094 437 aa18.35■□□□□ 0.53
CLSTN3-214ENST00000542663 EIF4EBP2Q13542 120 aaPredicted RBP18.35■□□□□ 0.53
CLSTN3-214ENST00000542663 SLC12A1Q13621 1099 aa18.35■□□□□ 0.53
CLSTN3-214ENST00000542663 POM121L1PQ3SYA9 428 aa18.35■□□□□ 0.53
CLSTN3-214ENST00000542663 CDCP2Q5VXM1 449 aa18.35■□□□□ 0.53
CLSTN3-214ENST00000542663 CXorf57Q6NSI4 855 aaKnown RBP18.35■□□□□ 0.53
CLSTN3-214ENST00000542663 BEND5Q7L4P6 421 aa18.35■□□□□ 0.53
CLSTN3-214ENST00000542663 TMEM145Q8NBT3 493 aa18.35■□□□□ 0.53
CLSTN3-214ENST00000542663 ZNF248Q8NDW4 579 aa18.35■□□□□ 0.53
CLSTN3-214ENST00000542663 OR4C6Q8NH72 309 aa18.35■□□□□ 0.53
CLSTN3-214ENST00000542663 LMO3Q8TAP4 145 aa18.35■□□□□ 0.53
CLSTN3-214ENST00000542663 ALG14Q96F25 216 aa18.35■□□□□ 0.53
CLSTN3-214ENST00000542663 NAF1Q96HR8 494 aaKnown RBP18.35■□□□□ 0.53
CLSTN3-214ENST00000542663 HIC2Q96JB3 615 aa18.35■□□□□ 0.53
CLSTN3-214ENST00000542663 BTN2A3PQ96KV6 586 aa18.35■□□□□ 0.53
CLSTN3-214ENST00000542663 NT5C1BQ96P26 610 aa18.35■□□□□ 0.53
CLSTN3-214ENST00000542663 LGMNQ99538 433 aa18.35■□□□□ 0.53
CLSTN3-214ENST00000542663 TJP2Q9UDY2 1190 aa18.35■□□□□ 0.53
CLSTN3-214ENST00000542663 ARMCX3Q9UH62 379 aaPredicted RBP18.35■□□□□ 0.53
CLSTN3-214ENST00000542663 PPM1HQ9ULR3 514 aa18.35■□□□□ 0.53
CLSTN3-214ENST00000542663 ZDHHC9Q9Y397 364 aa18.35■□□□□ 0.53
CLSTN3-214ENST00000542663 PRAMEF26H0Y7S4 382 aa18.34■□□□□ 0.53
CLSTN3-214ENST00000542663 TRUB2O95900 331 aaKnown RBP18.34■□□□□ 0.53
CLSTN3-214ENST00000542663 APOEP02649 317 aa18.34■□□□□ 0.53
CLSTN3-214ENST00000542663 DGKAP23743 735 aa18.34■□□□□ 0.53
CLSTN3-214ENST00000542663 VASPP50552 380 aaPredicted RBP18.34■□□□□ 0.53
CLSTN3-214ENST00000542663 KRT85P78386 507 aa18.34■□□□□ 0.53
CLSTN3-214ENST00000542663 SULT2A1Q06520 285 aa18.34■□□□□ 0.53
CLSTN3-214ENST00000542663 PNOCQ13519 176 aa18.34■□□□□ 0.53
CLSTN3-214ENST00000542663 SETMARQ53H47 684 aaPredicted RBP18.34■□□□□ 0.53
CLSTN3-214ENST00000542663 COBLL1Q53SF7 1204 aa18.34■□□□□ 0.53
CLSTN3-214ENST00000542663 PPM1KQ8N3J5 372 aa18.34■□□□□ 0.53
CLSTN3-214ENST00000542663 OR52K2Q8NGK3 314 aa18.34■□□□□ 0.53
CLSTN3-214ENST00000542663 OR8D1Q8WZ84 308 aa18.34■□□□□ 0.53
CLSTN3-214ENST00000542663 KLHDC7BQ96G42 594 aa18.34■□□□□ 0.53
CLSTN3-214ENST00000542663 CPNE5Q9HCH3 593 aa18.34■□□□□ 0.53
CLSTN3-214ENST00000542663 ST7Q9NRC1 585 aa18.34■□□□□ 0.53
CLSTN3-214ENST00000542663 RP1P56715 2156 aa18.33■□□□□ 0.52
CLSTN3-214ENST00000542663 A0A1W2PQ27 194 aa18.33■□□□□ 0.52
CLSTN3-214ENST00000542663 A0A1W2PQ64 194 aa18.33■□□□□ 0.52
CLSTN3-214ENST00000542663 KCNU1A8MYU2 1149 aa18.33■□□□□ 0.52
CLSTN3-214ENST00000542663 F5H5T6 163 aa18.33■□□□□ 0.52
CLSTN3-214ENST00000542663 SART1O43290 800 aaKnown RBP18.33■□□□□ 0.52
CLSTN3-214ENST00000542663 ATP9BO43861 1147 aa18.33■□□□□ 0.52
CLSTN3-214ENST00000542663 MPOP05164 745 aa18.33■□□□□ 0.52
CLSTN3-214ENST00000542663 PCBP4P57723 403 aaKnown RBP18.33■□□□□ 0.52
CLSTN3-214ENST00000542663 DAB2P98082 770 aa18.33■□□□□ 0.52
CLSTN3-214ENST00000542663 FAM46CQ5VWP2 391 aa18.33■□□□□ 0.52
CLSTN3-214ENST00000542663 DSG4Q86SJ6 1040 aa18.33■□□□□ 0.52
CLSTN3-214ENST00000542663 HSCBQ8IWL3 235 aa18.33■□□□□ 0.52
CLSTN3-214ENST00000542663 ZNF578Q96N58 590 aaPredicted RBP18.33■□□□□ 0.52
CLSTN3-214ENST00000542663 TSG101Q99816 390 aa18.33■□□□□ 0.52
CLSTN3-214ENST00000542663 MYOCQ99972 504 aa18.33■□□□□ 0.52
CLSTN3-214ENST00000542663 LY6G6EA0A0G2JKS1 128 aa18.32■□□□□ 0.52
CLSTN3-214ENST00000542663 A0A1B0GVM2 712 aa18.32■□□□□ 0.52
CLSTN3-214ENST00000542663 TCAF2A6NFQ2 919 aa18.32■□□□□ 0.52
CLSTN3-214ENST00000542663 J3QKU1 62 aa18.32■□□□□ 0.52
CLSTN3-214ENST00000542663 MCF2LO15068 1137 aa18.32■□□□□ 0.52
CLSTN3-214ENST00000542663 PMM2O15305 246 aa18.32■□□□□ 0.52
CLSTN3-214ENST00000542663 FFAR2O15552 330 aa18.32■□□□□ 0.52
CLSTN3-214ENST00000542663 OPA1O60313 960 aa18.32■□□□□ 0.52
CLSTN3-214ENST00000542663 DXOO77932 396 aaKnown RBP18.32■□□□□ 0.52
CLSTN3-214ENST00000542663 THEGLP0DJG4 465 aa18.32■□□□□ 0.52
CLSTN3-214ENST00000542663 CKMT1AP12532 417 aa18.32■□□□□ 0.52
CLSTN3-214ENST00000542663 PRLRP16471 622 aa18.32■□□□□ 0.52
CLSTN3-214ENST00000542663 IRAK1P51617 712 aa18.32■□□□□ 0.52
CLSTN3-214ENST00000542663 NUCB2P80303 420 aa18.32■□□□□ 0.52
CLSTN3-214ENST00000542663 CENPCQ03188 943 aa18.32■□□□□ 0.52
CLSTN3-214ENST00000542663 KCNMA1Q12791 1236 aa18.32■□□□□ 0.52
CLSTN3-214ENST00000542663 PIP5KL1Q5T9C9 394 aa18.32■□□□□ 0.52
CLSTN3-214ENST00000542663 ZNF658Q5TYW1 1059 aaPredicted RBP18.32■□□□□ 0.52
CLSTN3-214ENST00000542663 Q6ZVU0 165 aa18.32■□□□□ 0.52
CLSTN3-214ENST00000542663 RRAGAQ7L523 313 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms