RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 PDPK2PQ6A1A2 396 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 HOMEZQ8IX15 550 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 RFWD2Q8NHY2 731 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 LPPQ93052 612 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 PTCD3Q96EY7 689 aaKnown RBP10.08□□□□□ -0.8
SS18-205ENST00000542420 CEP295NLQ96MC4 621 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 KCNK16Q96T55 309 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 KIFC1Q9BW19 673 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 CFHR5Q9BXR6 569 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 FTHL17Q9BXU8 183 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.08□□□□□ -0.8
SS18-205ENST00000542420 FBXO44Q9H4M3 255 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 RNF19AQ9NV58 838 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 PCMTD2Q9NV79 361 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 TMEM30AQ9NV96 361 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 IL37Q9NZH6 218 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 SCML2Q9UQR0 700 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 TMEM114B3SHH9 223 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 FAM72CH0Y354 149 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 MGEA5O60502 916 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 SIN3BO75182 1162 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 ALDOAP04075 364 aaKnown RBP10.07□□□□□ -0.8
SS18-205ENST00000542420 COL6A2P12110 1019 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 EPHB2P29323 1055 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 CD68P34810 354 aaPredicted RBP10.07□□□□□ -0.8
SS18-205ENST00000542420 GCKP35557 465 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 CSRP3P50461 194 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 CACNA2D1P54289 1103 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 GEMP55040 296 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 SESN2P58004 480 aaPredicted RBP10.07□□□□□ -0.8
SS18-205ENST00000542420 STX3Q13277 289 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 KCNA10Q16322 511 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 ANO4Q32M45 955 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 TBC1D25Q3MII6 688 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 ANKRD20A4Q4UJ75 823 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 MROH9Q5TGP6 573 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 FAM72AQ5TYM5 149 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 BTBD8Q5XKL5 378 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 FAM72DQ6L9T8 149 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 POTEHQ6S545 545 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 MTDHQ86UE4 582 aaKnown RBP10.07□□□□□ -0.8
SS18-205ENST00000542420 FAM72BQ86X60 149 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 SPATA2LQ8IUW3 424 aaPredicted RBP10.07□□□□□ -0.8
SS18-205ENST00000542420 WDR75Q8IWA0 830 aaKnown RBP10.07□□□□□ -0.8
SS18-205ENST00000542420 CNTN4Q8IWV2 1026 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 NPWQ8N729 165 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 GABPB2Q8TAK5 448 aaPredicted RBP10.07□□□□□ -0.8
SS18-205ENST00000542420 URGCPQ8TCY9 931 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 ADAM2Q99965 735 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 ZCWPW1Q9H0M4 648 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 ELAC1Q9H777 363 aaKnown RBP10.07□□□□□ -0.8
SS18-205ENST00000542420 NOP53Q9NZM5 478 aaKnown RBP10.07□□□□□ -0.8
SS18-205ENST00000542420 SEPT10Q9P0V9 454 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 HEY2Q9UBP5 337 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 BAIAP2L1Q9UHR4 511 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 ZCWPW2A0A1B0GU75 182 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 WDR91A4D1P6 747 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 ARHGAP42A6NI28 874 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 I6L893 689 aaPredicted RBP10.07□□□□□ -0.8
SS18-205ENST00000542420 MATN3O15232 486 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 ZBTB24O43167 697 aaPredicted RBP10.07□□□□□ -0.8
SS18-205ENST00000542420 UGT1A9O60656 530 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 PGK1P00558 417 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 PROCP04070 461 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 CTSHP09668 335 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 BDNFP23560 247 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 FLT3LGP49771 235 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 YWHAHQ04917 246 aaPredicted RBP10.07□□□□□ -0.8
SS18-205ENST00000542420 CACNB2Q08289 660 aaPredicted RBP10.07□□□□□ -0.8
SS18-205ENST00000542420 CHI3L2Q15782 390 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 CMPK2Q5EBM0 449 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 MAP3K21Q5TCX8 1036 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 MBLAC2Q68D91 279 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 GLB1LQ6UWU2 654 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 RNF180Q86T96 592 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 ENDOVQ8N8Q3 282 aaKnown RBP10.07□□□□□ -0.8
SS18-205ENST00000542420 OR6Y1Q8NGX8 325 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 PPP1R13LQ8WUF5 828 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 BTBD10Q9BSF8 475 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 MLPHQ9BV36 600 aaPredicted RBP10.07□□□□□ -0.8
SS18-205ENST00000542420 PRKD2Q9BZL6 878 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 C1orf21Q9H246 121 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 UGT1A7Q9HAW7 530 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 UGT1A10Q9HAW8 530 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 UGT1A8Q9HAW9 530 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 ANLNQ9NQW6 1124 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 ENTPD7Q9NQZ7 604 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 OLA1Q9NTK5 396 aaKnown RBP10.07□□□□□ -0.8
SS18-205ENST00000542420 TBC1D13Q9NVG8 400 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 DNAJC28Q9NX36 388 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 CAMSAP3Q9P1Y5 1249 aaPredicted RBP10.07□□□□□ -0.8
SS18-205ENST00000542420 PPARGC1AQ9UBK2 798 aaKnown RBP10.07□□□□□ -0.8
SS18-205ENST00000542420 GGT7Q9UJ14 662 aa10.07□□□□□ -0.8
SS18-205ENST00000542420 EPB41L3Q9Y2J2 1087 aaPredicted RBP10.07□□□□□ -0.8
SS18-205ENST00000542420 HBS1LQ9Y450 684 aaKnown RBP10.07□□□□□ -0.8
SS18-205ENST00000542420 CHD5Q8TDI0 1954 aa10.06□□□□□ -0.8
SS18-205ENST00000542420 A0A0G2JND7 137 aa10.06□□□□□ -0.8
SS18-205ENST00000542420 FAM92AA1XBS5 289 aa10.06□□□□□ -0.8
SS18-205ENST00000542420 KCNU1A8MYU2 1149 aa10.06□□□□□ -0.8
SS18-205ENST00000542420 TPP1O14773 563 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms