RNA–Protein interactions for RNA: ENST00000542002.5

YBX3-212, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-212ENST00000542002 CACUL1Q86Y37 369 aa9.99□□□□□ -0.81
YBX3-212ENST00000542002 CCDC117Q8IWD4 279 aaPredicted RBP9.99□□□□□ -0.81
YBX3-212ENST00000542002 KIAA2013Q8IYS2 634 aa9.99□□□□□ -0.81
YBX3-212ENST00000542002 TC2NQ8N9U0 490 aa9.99□□□□□ -0.81
YBX3-212ENST00000542002 KDM1BQ8NB78 822 aa9.99□□□□□ -0.81
YBX3-212ENST00000542002 OR2T3Q8NH03 318 aa9.99□□□□□ -0.81
YBX3-212ENST00000542002 SIPA1Q96FS4 1042 aa9.99□□□□□ -0.81
YBX3-212ENST00000542002 PHF12Q96QT6 1004 aa9.99□□□□□ -0.81
YBX3-212ENST00000542002 NOL6Q9H6R4 1146 aaKnown RBP9.99□□□□□ -0.81
YBX3-212ENST00000542002 TMEM74BQ9NUR3 256 aa9.99□□□□□ -0.81
YBX3-212ENST00000542002 USP36Q9P275 1121 aaKnown RBP9.99□□□□□ -0.81
YBX3-212ENST00000542002 NCDNQ9UBB6 729 aa9.99□□□□□ -0.81
YBX3-212ENST00000542002 SUN2Q9UH99 717 aa9.99□□□□□ -0.81
YBX3-212ENST00000542002 DNAI1Q9UI46 699 aa9.99□□□□□ -0.81
YBX3-212ENST00000542002 RAB23Q9ULC3 237 aa9.99□□□□□ -0.81
YBX3-212ENST00000542002 MYO18AQ92614 2054 aaKnown RBP9.98□□□□□ -0.81
YBX3-212ENST00000542002 ILVBLA1L0T0 632 aa9.98□□□□□ -0.81
YBX3-212ENST00000542002 ANKRD62A6NC57 917 aa9.98□□□□□ -0.81
YBX3-212ENST00000542002 MAP3K13O43283 966 aa9.98□□□□□ -0.81
YBX3-212ENST00000542002 ATP9BO43861 1147 aa9.98□□□□□ -0.81
YBX3-212ENST00000542002 LRCH4O75427 683 aa9.98□□□□□ -0.81
YBX3-212ENST00000542002 EPN2O95208 641 aa9.98□□□□□ -0.81
YBX3-212ENST00000542002 MOCS3O95396 460 aa9.98□□□□□ -0.81
YBX3-212ENST00000542002 RHOCP08134 193 aa9.98□□□□□ -0.81
YBX3-212ENST00000542002 MYBL1P10243 752 aa9.98□□□□□ -0.81
YBX3-212ENST00000542002 RHOQP17081 205 aa9.98□□□□□ -0.81
YBX3-212ENST00000542002 L1CAMP32004 1257 aa9.98□□□□□ -0.81
YBX3-212ENST00000542002 VASPP50552 380 aaPredicted RBP9.98□□□□□ -0.81
YBX3-212ENST00000542002 METAP1P53582 386 aa9.98□□□□□ -0.81
YBX3-212ENST00000542002 TRIM14Q14142 442 aa9.98□□□□□ -0.81
YBX3-212ENST00000542002 STARD3Q14849 445 aa9.98□□□□□ -0.81
YBX3-212ENST00000542002 SLC18A3Q16572 532 aa9.98□□□□□ -0.81
YBX3-212ENST00000542002 PLA2G2CQ5R387 149 aa9.98□□□□□ -0.81
YBX3-212ENST00000542002 ACBD5Q5T8D3 534 aaPredicted RBP9.98□□□□□ -0.81
YBX3-212ENST00000542002 TXNRD3NBQ6F5E7 133 aa9.98□□□□□ -0.81
YBX3-212ENST00000542002 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.98□□□□□ -0.81
YBX3-212ENST00000542002 SLC41A1Q8IVJ1 513 aa9.98□□□□□ -0.81
YBX3-212ENST00000542002 STK40Q8N2I9 435 aa9.98□□□□□ -0.81
YBX3-212ENST00000542002 FNIP1Q8TF40 1166 aa9.98□□□□□ -0.81
YBX3-212ENST00000542002 LOXL4Q96JB6 756 aa9.98□□□□□ -0.81
YBX3-212ENST00000542002 HINFPQ9BQA5 517 aa9.98□□□□□ -0.81
YBX3-212ENST00000542002 SPON2Q9BUD6 331 aa9.98□□□□□ -0.81
YBX3-212ENST00000542002 NUP85Q9BW27 656 aa9.98□□□□□ -0.81
YBX3-212ENST00000542002 ACE2Q9BYF1 805 aaPredicted RBP9.98□□□□□ -0.81
YBX3-212ENST00000542002 KLC2Q9H0B6 622 aa9.98□□□□□ -0.81
YBX3-212ENST00000542002 MUC3BQ9H195 1237 aa9.98□□□□□ -0.81
YBX3-212ENST00000542002 RSPH9Q9H1X1 276 aaPredicted RBP9.98□□□□□ -0.81
YBX3-212ENST00000542002 NHEJ1Q9H9Q4 299 aaPredicted RBP9.98□□□□□ -0.81
YBX3-212ENST00000542002 RXFP3Q9NSD7 469 aa9.98□□□□□ -0.81
YBX3-212ENST00000542002 SEMA4GQ9NTN9 838 aa9.98□□□□□ -0.81
YBX3-212ENST00000542002 SPTLC3Q9NUV7 552 aa9.98□□□□□ -0.81
YBX3-212ENST00000542002 WSB2Q9NYS7 404 aaPredicted RBP9.98□□□□□ -0.81
YBX3-212ENST00000542002 VPS51Q9UID3 782 aa9.98□□□□□ -0.81
YBX3-212ENST00000542002 VPS28Q9UK41 221 aa9.98□□□□□ -0.81
YBX3-212ENST00000542002 SARDHQ9UL12 918 aa9.98□□□□□ -0.81
YBX3-212ENST00000542002 MUC22E2RYF6 1773 aaPredicted RBP9.98□□□□□ -0.81
YBX3-212ENST00000542002 EML5Q05BV3 1969 aa9.97□□□□□ -0.81
YBX3-212ENST00000542002 SSU72P8A0A1W2PR75 194 aa9.97□□□□□ -0.81
YBX3-212ENST00000542002 BCLAF3A2AJT9 711 aaKnown RBP9.97□□□□□ -0.81
YBX3-212ENST00000542002 TARSL2A2RTX5 802 aaKnown RBP9.97□□□□□ -0.81
YBX3-212ENST00000542002 AKR1B15C9JRZ8 316 aaPredicted RBP9.97□□□□□ -0.81
YBX3-212ENST00000542002 CREB3O43889 395 aa9.97□□□□□ -0.81
YBX3-212ENST00000542002 GDF9O60383 454 aa9.97□□□□□ -0.81
YBX3-212ENST00000542002 ZNF217O75362 1048 aa9.97□□□□□ -0.81
YBX3-212ENST00000542002 RHOBTB1O94844 696 aa9.97□□□□□ -0.81
YBX3-212ENST00000542002 IGLV3-19P01714 112 aa9.97□□□□□ -0.81
YBX3-212ENST00000542002 SRCP12931 536 aa9.97□□□□□ -0.81
YBX3-212ENST00000542002 ITPKAP23677 461 aa9.97□□□□□ -0.81
YBX3-212ENST00000542002 OXCT1P55809 520 aa9.97□□□□□ -0.81
YBX3-212ENST00000542002 ST8SIA6P61647 398 aa9.97□□□□□ -0.81
YBX3-212ENST00000542002 ARF5P84085 180 aa9.97□□□□□ -0.81
YBX3-212ENST00000542002 GNA12Q03113 381 aa9.97□□□□□ -0.81
YBX3-212ENST00000542002 SULT2A1Q06520 285 aa9.97□□□□□ -0.81
YBX3-212ENST00000542002 E2F5Q15329 346 aa9.97□□□□□ -0.81
YBX3-212ENST00000542002 SF3A2Q15428 464 aaKnown RBP9.97□□□□□ -0.81
YBX3-212ENST00000542002 DLG2Q15700 870 aa9.97□□□□□ -0.81
YBX3-212ENST00000542002 EFHC2Q5JST6 749 aa9.97□□□□□ -0.81
YBX3-212ENST00000542002 KCNT1Q5JUK3 1230 aa9.97□□□□□ -0.81
YBX3-212ENST00000542002 C6orf118Q5T5N4 469 aa9.97□□□□□ -0.81
YBX3-212ENST00000542002 ERMARDQ5T6L9 678 aa9.97□□□□□ -0.81
YBX3-212ENST00000542002 TCEAL6Q6IPX3 200 aa9.97□□□□□ -0.81
YBX3-212ENST00000542002 LEKR1Q6ZMV7 388 aa9.97□□□□□ -0.81
YBX3-212ENST00000542002 ARMCX6Q7L4S7 300 aa9.97□□□□□ -0.81
YBX3-212ENST00000542002 FAM124AQ86V42 546 aa9.97□□□□□ -0.81
YBX3-212ENST00000542002 VPS36Q86VN1 386 aa9.97□□□□□ -0.81
YBX3-212ENST00000542002 SH2D3CQ8N5H7 860 aa9.97□□□□□ -0.81
YBX3-212ENST00000542002 NETO2Q8NC67 525 aa9.97□□□□□ -0.81
YBX3-212ENST00000542002 PRCCQ92733 491 aaPredicted RBP9.97□□□□□ -0.81
YBX3-212ENST00000542002 ARHGEF2Q92974 986 aaKnown RBP9.97□□□□□ -0.81
YBX3-212ENST00000542002 TCEAL3Q969E4 200 aa9.97□□□□□ -0.81
YBX3-212ENST00000542002 VOPP1Q96AW1 172 aa9.97□□□□□ -0.81
YBX3-212ENST00000542002 TBC1D31Q96DN5 1066 aa9.97□□□□□ -0.81
YBX3-212ENST00000542002 TRIM11Q96F44 468 aa9.97□□□□□ -0.81
YBX3-212ENST00000542002 TOE1Q96GM8 510 aaKnown RBP9.97□□□□□ -0.81
YBX3-212ENST00000542002 ZNF419Q96HQ0 510 aaPredicted RBP9.97□□□□□ -0.81
YBX3-212ENST00000542002 KCTD15Q96SI1 283 aaPredicted RBP9.97□□□□□ -0.81
YBX3-212ENST00000542002 SNRNP25Q9BV90 132 aaKnown RBP9.97□□□□□ -0.81
YBX3-212ENST00000542002 MRPL47Q9HD33 250 aaKnown RBP9.97□□□□□ -0.81
YBX3-212ENST00000542002 TMEM248Q9NWD8 314 aa9.97□□□□□ -0.81
YBX3-212ENST00000542002 SERGEFQ9UGK8 458 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms