RNA–Protein interactions for RNA: ENST00000542001.5

VARS2-212, Transcript of valyl-tRNA synthetase 2, mitochondrial, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VARS2, Length 4,064 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2-212ENST00000542001 HFE2Q6ZVN8 426 aa16.41■□□□□ 0.22
VARS2-212ENST00000542001 NAT8LQ8N9F0 302 aa16.41■□□□□ 0.22
VARS2-212ENST00000542001 FAM156AQ8NDB6 213 aa16.41■□□□□ 0.22
VARS2-212ENST00000542001 MIEF2Q96C03 454 aa16.41■□□□□ 0.22
VARS2-212ENST00000542001 RRAGCQ9HB90 399 aa16.41■□□□□ 0.22
VARS2-212ENST00000542001 OLA1Q9NTK5 396 aaKnown RBP16.41■□□□□ 0.22
VARS2-212ENST00000542001 NCKIPSDQ9NZQ3 722 aa16.41■□□□□ 0.22
VARS2-212ENST00000542001 XPR1Q9UBH6 696 aa16.41■□□□□ 0.22
VARS2-212ENST00000542001 AAR2Q9Y312 384 aaKnown RBP16.41■□□□□ 0.22
VARS2-212ENST00000542001 TK2O00142 265 aa16.4■□□□□ 0.22
VARS2-212ENST00000542001 MGRN1O60291 552 aa16.4■□□□□ 0.22
VARS2-212ENST00000542001 KATNA1O75449 491 aa16.4■□□□□ 0.22
VARS2-212ENST00000542001 DDHD2O94830 711 aa16.4■□□□□ 0.22
VARS2-212ENST00000542001 ACADSP16219 412 aa16.4■□□□□ 0.22
VARS2-212ENST00000542001 GRIA4P48058 902 aa16.4■□□□□ 0.22
VARS2-212ENST00000542001 CD151P48509 253 aa16.4■□□□□ 0.22
VARS2-212ENST00000542001 C16orf89Q6UX73 402 aa16.4■□□□□ 0.22
VARS2-212ENST00000542001 LINC00523Q86TU6 105 aa16.4■□□□□ 0.22
VARS2-212ENST00000542001 ULK2Q8IYT8 1036 aa16.4■□□□□ 0.22
VARS2-212ENST00000542001 KYQ8NBH2 561 aa16.4■□□□□ 0.22
VARS2-212ENST00000542001 RAET1EQ8TD07 263 aa16.4■□□□□ 0.22
VARS2-212ENST00000542001 GPR63Q9BZJ6 419 aa16.4■□□□□ 0.22
VARS2-212ENST00000542001 EML4Q9HC35 981 aaKnown RBP16.4■□□□□ 0.22
VARS2-212ENST00000542001 LGALS13Q9UHV8 139 aa16.4■□□□□ 0.22
VARS2-212ENST00000542001 ZMYND8Q9ULU4 1186 aaPredicted RBP16.4■□□□□ 0.22
VARS2-212ENST00000542001 PCDHA11Q9Y5I1 949 aa16.4■□□□□ 0.22
VARS2-212ENST00000542001 FAM95CA0A1B0GW59 222 aa16.4■□□□□ 0.22
VARS2-212ENST00000542001 BPGMP07738 259 aa16.4■□□□□ 0.22
VARS2-212ENST00000542001 IVDP26440 423 aa16.4■□□□□ 0.22
VARS2-212ENST00000542001 ICAM3P32942 547 aa16.4■□□□□ 0.22
VARS2-212ENST00000542001 ADRA1BP35368 520 aa16.4■□□□□ 0.22
VARS2-212ENST00000542001 GEMP55040 296 aa16.4■□□□□ 0.22
VARS2-212ENST00000542001 PTP4A2Q12974 167 aa16.4■□□□□ 0.22
VARS2-212ENST00000542001 PPIL2Q13356 520 aa16.4■□□□□ 0.22
VARS2-212ENST00000542001 DDX39BQ13838 428 aaKnown RBP16.4■□□□□ 0.22
VARS2-212ENST00000542001 SNX17Q15036 470 aa16.4■□□□□ 0.22
VARS2-212ENST00000542001 AGAP9Q5VTM2 703 aa16.4■□□□□ 0.22
VARS2-212ENST00000542001 FAM171A1Q5VUB5 890 aa16.4■□□□□ 0.22
VARS2-212ENST00000542001 NEPROQ6NW34 567 aa16.4■□□□□ 0.22
VARS2-212ENST00000542001 SLC30A1Q9Y6M5 507 aa16.4■□□□□ 0.22
VARS2-212ENST00000542001 MYH7BA7E2Y1 1941 aa16.4■□□□□ 0.22
VARS2-212ENST00000542001 SMCHD1A6NHR9 2005 aa16.4■□□□□ 0.22
VARS2-212ENST00000542001 TTC24A2A3L6 582 aaPredicted RBP16.4■□□□□ 0.22
VARS2-212ENST00000542001 C9IYK1 514 aa16.4■□□□□ 0.22
VARS2-212ENST00000542001 CCDC166P0CW27 439 aa16.4■□□□□ 0.22
VARS2-212ENST00000542001 OR1E1P30953 314 aa16.4■□□□□ 0.22
VARS2-212ENST00000542001 GRM5P41594 1212 aa16.4■□□□□ 0.22
VARS2-212ENST00000542001 CD86P42081 329 aa16.4■□□□□ 0.22
VARS2-212ENST00000542001 GJA9P57773 515 aa16.4■□□□□ 0.22
VARS2-212ENST00000542001 ZNF410Q86VK4 478 aa16.4■□□□□ 0.22
VARS2-212ENST00000542001 PRR11Q96HE9 360 aaPredicted RBP16.4■□□□□ 0.22
VARS2-212ENST00000542001 SEPHS2Q99611 448 aa16.4■□□□□ 0.22
VARS2-212ENST00000542001 SENP6Q9GZR1 1112 aaPredicted RBP16.4■□□□□ 0.22
VARS2-212ENST00000542001 POMKQ9H5K3 350 aa16.4■□□□□ 0.22
VARS2-212ENST00000542001 DDX18Q9NVP1 670 aaKnown RBP16.4■□□□□ 0.22
VARS2-212ENST00000542001 PRPF4O43172 522 aaKnown RBP eCLIP16.4■□□□□ 0.221e-6■■□□□ 13.8
VARS2-212ENST00000542001 SRP72O76094 671 aaKnown RBP16.4■□□□□ 0.22
VARS2-212ENST00000542001 GUCA1CO95843 209 aa16.4■□□□□ 0.22
VARS2-212ENST00000542001 HMOX2P30519 316 aa16.4■□□□□ 0.22
VARS2-212ENST00000542001 HDAC4P56524 1084 aa16.4■□□□□ 0.22
VARS2-212ENST00000542001 PNPLA1Q8N8W4 532 aa16.4■□□□□ 0.22
VARS2-212ENST00000542001 BANPQ8N9N5 519 aa16.4■□□□□ 0.22
VARS2-212ENST00000542001 SEC14L1Q92503 715 aa16.4■□□□□ 0.22
VARS2-212ENST00000542001 MYLPFQ96A32 169 aa16.4■□□□□ 0.22
VARS2-212ENST00000542001 CCT7Q99832 543 aa16.4■□□□□ 0.22
VARS2-212ENST00000542001 STX7O15400 261 aaKnown RBP16.39■□□□□ 0.21
VARS2-212ENST00000542001 CCNB1P14635 433 aa16.39■□□□□ 0.21
VARS2-212ENST00000542001 ZNF252P-AS1Q0IIN9 211 aa16.39■□□□□ 0.21
VARS2-212ENST00000542001 KLF1Q13351 362 aaPredicted RBP16.39■□□□□ 0.21
VARS2-212ENST00000542001 RAP1GAP2Q684P5 730 aa16.39■□□□□ 0.21
VARS2-212ENST00000542001 CCNJLQ8IV13 435 aa16.39■□□□□ 0.21
VARS2-212ENST00000542001 ZNF567Q8N184 647 aa16.39■□□□□ 0.21
VARS2-212ENST00000542001 SMARCD1Q96GM5 515 aa16.39■□□□□ 0.21
VARS2-212ENST00000542001 MAGEA13PA6NCF6 341 aa16.39■□□□□ 0.21
VARS2-212ENST00000542001 CLCNKBP51801 687 aa16.39■□□□□ 0.21
VARS2-212ENST00000542001 PTRHD1Q6GMV3 140 aaKnown RBP16.39■□□□□ 0.21
VARS2-212ENST00000542001 HSFY1Q96LI6 401 aa16.39■□□□□ 0.21
VARS2-212ENST00000542001 GLT1D1Q96MS3 346 aa16.39■□□□□ 0.21
VARS2-212ENST00000542001 ZNF184Q99676 751 aaPredicted RBP16.39■□□□□ 0.21
VARS2-212ENST00000542001 MARF1Q9Y4F3 1742 aaKnown RBP16.39■□□□□ 0.21
VARS2-212ENST00000542001 PRRG1O14668 218 aa16.39■□□□□ 0.21
VARS2-212ENST00000542001 RANBP1P43487 201 aa16.39■□□□□ 0.21
VARS2-212ENST00000542001 CHRNA4P43681 627 aa16.39■□□□□ 0.21
VARS2-212ENST00000542001 LILRA4P59901 499 aa16.39■□□□□ 0.21
VARS2-212ENST00000542001 SLC25A11Q02978 314 aaKnown RBP16.39■□□□□ 0.21
VARS2-212ENST00000542001 SWT1Q5T5J6 900 aaKnown RBP16.39■□□□□ 0.21
VARS2-212ENST00000542001 CDHR3Q6ZTQ4 885 aa16.39■□□□□ 0.21
VARS2-212ENST00000542001 UNC93AQ86WB7 457 aa16.39■□□□□ 0.21
VARS2-212ENST00000542001 CFAP52Q8N1V2 620 aa16.39■□□□□ 0.21
VARS2-212ENST00000542001 ZNF786Q8N393 782 aa16.39■□□□□ 0.21
VARS2-212ENST00000542001 CMASQ8NFW8 434 aaPredicted RBP16.39■□□□□ 0.21
VARS2-212ENST00000542001 RCN3Q96D15 328 aa16.39■□□□□ 0.21
VARS2-212ENST00000542001 STRA6Q9BX79 667 aa16.39■□□□□ 0.21
VARS2-212ENST00000542001 DMAP1Q9NPF5 467 aaPredicted RBP16.39■□□□□ 0.21
VARS2-212ENST00000542001 NIPSNAP3AQ9UFN0 247 aaPredicted RBP16.39■□□□□ 0.21
VARS2-212ENST00000542001 LRCH1Q9Y2L9 728 aa16.39■□□□□ 0.21
VARS2-212ENST00000542001 PKP3Q9Y446 797 aa16.39■□□□□ 0.21
VARS2-212ENST00000542001 MOXD2PA6NHM9 499 aa16.38■□□□□ 0.21
VARS2-212ENST00000542001 SLC15A5A6NIM6 579 aa16.38■□□□□ 0.21
VARS2-212ENST00000542001 DARSP14868 501 aaKnown RBP16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms