RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, humanhuman

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-209ENST00000540747 ASCL3Q9NQ33 180 aa7.54□□□□□ -1.2
YBX3-209ENST00000540747 GPR27Q9NS67 375 aa7.54□□□□□ -1.2
YBX3-209ENST00000540747 CHMP5Q9NZZ3 219 aa7.54□□□□□ -1.2
YBX3-209ENST00000540747 PPM1HQ9ULR3 514 aa7.54□□□□□ -1.2
YBX3-209ENST00000540747 OR51B4Q9Y5P0 310 aa7.54□□□□□ -1.2
YBX3-209ENST00000540747 DOCK9Q9BZ29 2069 aa7.53□□□□□ -1.2
YBX3-209ENST00000540747 A0A1B0GVM2 712 aa7.53□□□□□ -1.2
YBX3-209ENST00000540747 KCNU1A8MYU2 1149 aa7.53□□□□□ -1.2
YBX3-209ENST00000540747 J3QKU1 62 aa7.53□□□□□ -1.2
YBX3-209ENST00000540747 M0QYV0 167 aa7.53□□□□□ -1.2
YBX3-209ENST00000540747 PIK3R2O00459 728 aa7.53□□□□□ -1.2
YBX3-209ENST00000540747 CETN3O15182 167 aa7.53□□□□□ -1.2
YBX3-209ENST00000540747 ALOX15BO15296 676 aa7.53□□□□□ -1.2
YBX3-209ENST00000540747 OPA1O60313 960 aa7.53□□□□□ -1.2
YBX3-209ENST00000540747 CALCAP01258 141 aa7.53□□□□□ -1.2
YBX3-209ENST00000540747 CKMT1AP12532 417 aa7.53□□□□□ -1.2
YBX3-209ENST00000540747 TACR2P21452 398 aa7.53□□□□□ -1.2
YBX3-209ENST00000540747 DGKAP23743 735 aa7.53□□□□□ -1.2
YBX3-209ENST00000540747 BRD2P25440 801 aaKnown RBP7.53□□□□□ -1.2
YBX3-209ENST00000540747 GPD2P43304 727 aa7.53□□□□□ -1.2
YBX3-209ENST00000540747 SYKP43405 635 aa7.53□□□□□ -1.2
YBX3-209ENST00000540747 PMS1P54277 932 aaKnown RBP7.53□□□□□ -1.2
YBX3-209ENST00000540747 PITX1P78337 314 aaPredicted RBP7.53□□□□□ -1.2
YBX3-209ENST00000540747 E2F1Q01094 437 aa7.53□□□□□ -1.2
YBX3-209ENST00000540747 CCDC173Q0VFZ6 552 aa7.53□□□□□ -1.2
YBX3-209ENST00000540747 KCNH2Q12809 1159 aa7.53□□□□□ -1.2
YBX3-209ENST00000540747 CNTN1Q12860 1018 aa7.53□□□□□ -1.2
YBX3-209ENST00000540747 SLC12A1Q13621 1099 aa7.53□□□□□ -1.2
YBX3-209ENST00000540747 STILQ15468 1287 aa7.53□□□□□ -1.2
YBX3-209ENST00000540747 MEA1Q16626 185 aa7.53□□□□□ -1.2
YBX3-209ENST00000540747 ARTNQ5T4W7 220 aa7.53□□□□□ -1.2
YBX3-209ENST00000540747 SYPL2Q5VXT5 272 aa7.53□□□□□ -1.2
YBX3-209ENST00000540747 TMEM270Q6UE05 265 aa7.53□□□□□ -1.2
YBX3-209ENST00000540747 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP7.53□□□□□ -1.2
YBX3-209ENST00000540747 LGI2Q8N0V4 545 aa7.53□□□□□ -1.2
YBX3-209ENST00000540747 ZNF248Q8NDW4 579 aa7.53□□□□□ -1.2
YBX3-209ENST00000540747 OR52K2Q8NGK3 314 aa7.53□□□□□ -1.2
YBX3-209ENST00000540747 ZNF578Q96N58 590 aaPredicted RBP7.53□□□□□ -1.2
YBX3-209ENST00000540747 SLC4A5Q9BY07 1137 aa7.53□□□□□ -1.2
YBX3-209ENST00000540747 CAAP1Q9H8G2 361 aa7.53□□□□□ -1.2
YBX3-209ENST00000540747 KLHL11Q9NVR0 708 aa7.53□□□□□ -1.2
YBX3-209ENST00000540747 UCKL1Q9NWZ5 548 aa7.53□□□□□ -1.2
YBX3-209ENST00000540747 CNTN6Q9UQ52 1028 aa7.53□□□□□ -1.2
YBX3-209ENST00000540747 NAALADL1Q9UQQ1 740 aa7.53□□□□□ -1.2
YBX3-209ENST00000540747 CA5BQ9Y2D0 317 aa7.53□□□□□ -1.2
YBX3-209ENST00000540747 ZDHHC9Q9Y397 364 aa7.53□□□□□ -1.2
YBX3-209ENST00000540747 TBC1D3DA0A087WVF3 549 aa7.52□□□□□ -1.21
YBX3-209ENST00000540747 TBC1D3IA0A087WXS9 549 aa7.52□□□□□ -1.21
YBX3-209ENST00000540747 TBC1D3EA0A087X179 549 aa7.52□□□□□ -1.21
YBX3-209ENST00000540747 TBC1D3KA0A087X1G2 549 aa7.52□□□□□ -1.21
YBX3-209ENST00000540747 A0A1W2PQ27 194 aa7.52□□□□□ -1.21
YBX3-209ENST00000540747 A0A1W2PQ64 194 aa7.52□□□□□ -1.21
YBX3-209ENST00000540747 TYW5A2RUC4 315 aaKnown RBP7.52□□□□□ -1.21
YBX3-209ENST00000540747 TBC1D3FA6NER0 549 aaPredicted RBP7.52□□□□□ -1.21
YBX3-209ENST00000540747 CAPN8A6NHC0 703 aa7.52□□□□□ -1.21
YBX3-209ENST00000540747 TBC1D3LB9A6J9 549 aa7.52□□□□□ -1.21
YBX3-209ENST00000540747 PRAMEF26H0Y7S4 382 aa7.52□□□□□ -1.21
YBX3-209ENST00000540747 CAPN9O14815 690 aa7.52□□□□□ -1.21
YBX3-209ENST00000540747 MCF2LO15068 1137 aa7.52□□□□□ -1.21
YBX3-209ENST00000540747 SART1O43290 800 aaKnown RBP7.52□□□□□ -1.21
YBX3-209ENST00000540747 MAGEC1O60732 1142 aa7.52□□□□□ -1.21
YBX3-209ENST00000540747 RNGTTO60942 597 aaKnown RBP7.52□□□□□ -1.21
YBX3-209ENST00000540747 SDC3O75056 442 aa7.52□□□□□ -1.21
YBX3-209ENST00000540747 PIAS2O75928 621 aa7.52□□□□□ -1.21
YBX3-209ENST00000540747 MOCS3O95396 460 aa7.52□□□□□ -1.21
YBX3-209ENST00000540747 MOCS2O96007 188 aaPredicted RBP7.52□□□□□ -1.21
YBX3-209ENST00000540747 IL1BP01584 269 aa7.52□□□□□ -1.21
YBX3-209ENST00000540747 GP1BAP07359 652 aa7.52□□□□□ -1.21
YBX3-209ENST00000540747 CTSLP07711 333 aa7.52□□□□□ -1.21
YBX3-209ENST00000540747 TBC1D3HP0C7X1 549 aa7.52□□□□□ -1.21
YBX3-209ENST00000540747 PDGFRAP16234 1089 aa7.52□□□□□ -1.21
YBX3-209ENST00000540747 MAT2AP31153 395 aaKnown RBP7.52□□□□□ -1.21
YBX3-209ENST00000540747 PRCPP42785 496 aa7.52□□□□□ -1.21
YBX3-209ENST00000540747 LSSP48449 732 aa7.52□□□□□ -1.21
YBX3-209ENST00000540747 IRAK1P51617 712 aa7.52□□□□□ -1.21
YBX3-209ENST00000540747 UCNP55089 124 aa7.52□□□□□ -1.21
YBX3-209ENST00000540747 PCBP4P57723 403 aaKnown RBP7.52□□□□□ -1.21
YBX3-209ENST00000540747 ERVPABLB-1P60509 514 aa7.52□□□□□ -1.21
YBX3-209ENST00000540747 CXADRP78310 365 aa7.52□□□□□ -1.21
YBX3-209ENST00000540747 RHDQ02161 417 aa7.52□□□□□ -1.21
YBX3-209ENST00000540747 SULT2A1Q06520 285 aa7.52□□□□□ -1.21
YBX3-209ENST00000540747 KCNMA1Q12791 1236 aa7.52□□□□□ -1.21
YBX3-209ENST00000540747 ZNF284Q2VY69 593 aa7.52□□□□□ -1.21
YBX3-209ENST00000540747 C5orf22Q49AR2 442 aa7.52□□□□□ -1.21
YBX3-209ENST00000540747 SETMARQ53H47 684 aaPredicted RBP7.52□□□□□ -1.21
YBX3-209ENST00000540747 ZC3H12AQ5D1E8 599 aaKnown RBP7.52□□□□□ -1.21
YBX3-209ENST00000540747 DCAF17Q5H9S7 520 aaPredicted RBP7.52□□□□□ -1.21
YBX3-209ENST00000540747 PIP5KL1Q5T9C9 394 aa7.52□□□□□ -1.21
YBX3-209ENST00000540747 RAP1GAP2Q684P5 730 aa7.52□□□□□ -1.21
YBX3-209ENST00000540747 TBC1D3GQ6DHY5 549 aa7.52□□□□□ -1.21
YBX3-209ENST00000540747 TBC1D3CQ6IPX1 549 aa7.52□□□□□ -1.21
YBX3-209ENST00000540747 KDM7AQ6ZMT4 941 aa7.52□□□□□ -1.21
YBX3-209ENST00000540747 ABI3BPQ7Z7G0 1075 aa7.52□□□□□ -1.21
YBX3-209ENST00000540747 PRPF39Q86UA1 669 aaKnown RBP7.52□□□□□ -1.21
YBX3-209ENST00000540747 CHSY1Q86X52 802 aa7.52□□□□□ -1.21
YBX3-209ENST00000540747 CIR1Q86X95 450 aaPredicted RBP7.52□□□□□ -1.21
YBX3-209ENST00000540747 TBC1D3Q8IZP1 549 aaPredicted RBP7.52□□□□□ -1.21
YBX3-209ENST00000540747 CCAR2Q8N163 923 aaKnown RBP7.52□□□□□ -1.21
YBX3-209ENST00000540747 SLC22A18ASQ8N1D0 253 aa7.52□□□□□ -1.21
YBX3-209ENST00000540747 FAM181AQ8N9Y4 354 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms