RNA–Protein interactions for RNA: ENST00000538970.5

VAMP1-206, Transcript of vesicle associated membrane protein 1, humanhuman

TSL 1 (best)

Gene VAMP1, Length 567 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP1-206ENST00000538970 COX16Q9P0S2 106 aa12.89□□□□□ -0.35
VAMP1-206ENST00000538970 AJAP1Q9UKB5 411 aaPredicted RBP12.89□□□□□ -0.35
VAMP1-206ENST00000538970 TPX2Q9ULW0 747 aaKnown RBP12.89□□□□□ -0.35
VAMP1-206ENST00000538970 TENM4Q6N022 2769 aa12.89□□□□□ -0.35
VAMP1-206ENST00000538970 PLXNB3Q9ULL4 1909 aa12.88□□□□□ -0.35
VAMP1-206ENST00000538970 LATO43561 262 aa12.88□□□□□ -0.35
VAMP1-206ENST00000538970 C1QL1O75973 258 aa12.88□□□□□ -0.35
VAMP1-206ENST00000538970 ERBB2P04626 1255 aa12.88□□□□□ -0.35
VAMP1-206ENST00000538970 PON1P27169 355 aa12.88□□□□□ -0.35
VAMP1-206ENST00000538970 CD38P28907 300 aa12.88□□□□□ -0.35
VAMP1-206ENST00000538970 VASPP50552 380 aaPredicted RBP12.88□□□□□ -0.35
VAMP1-206ENST00000538970 METAP1P53582 386 aa12.88□□□□□ -0.35
VAMP1-206ENST00000538970 OXCT1P55809 520 aa12.88□□□□□ -0.35
VAMP1-206ENST00000538970 MTA1Q13330 715 aa12.88□□□□□ -0.35
VAMP1-206ENST00000538970 AUHQ13825 339 aaKnown RBP12.88□□□□□ -0.35
VAMP1-206ENST00000538970 SHBQ15464 509 aa12.88□□□□□ -0.35
VAMP1-206ENST00000538970 CAMK4Q16566 473 aa12.88□□□□□ -0.35
VAMP1-206ENST00000538970 PTPN20Q4JDL3 420 aa12.88□□□□□ -0.35
VAMP1-206ENST00000538970 PRAMEF14Q5SWL7 426 aa12.88□□□□□ -0.35
VAMP1-206ENST00000538970 OTUD1Q5VV17 481 aaPredicted RBP12.88□□□□□ -0.35
VAMP1-206ENST00000538970 C11orf57Q6ZUT1 292 aaPredicted RBP12.88□□□□□ -0.35
VAMP1-206ENST00000538970 SLC26A9Q7LBE3 791 aa12.88□□□□□ -0.35
VAMP1-206ENST00000538970 CREBRFQ8IUR6 639 aa12.88□□□□□ -0.35
VAMP1-206ENST00000538970 GALNT15Q8N3T1 639 aa12.88□□□□□ -0.35
VAMP1-206ENST00000538970 OR52K2Q8NGK3 314 aa12.88□□□□□ -0.35
VAMP1-206ENST00000538970 OR14C36Q8NHC7 312 aa12.88□□□□□ -0.35
VAMP1-206ENST00000538970 RNF34Q969K3 372 aa12.88□□□□□ -0.35
VAMP1-206ENST00000538970 SKA1Q96BD8 255 aa12.88□□□□□ -0.35
VAMP1-206ENST00000538970 ALG14Q96F25 216 aa12.88□□□□□ -0.35
VAMP1-206ENST00000538970 RPRD1AQ96P16 312 aaPredicted RBP12.88□□□□□ -0.35
VAMP1-206ENST00000538970 NOX5Q96PH1 765 aa12.88□□□□□ -0.35
VAMP1-206ENST00000538970 SIX2Q9NPC8 291 aa12.88□□□□□ -0.35
VAMP1-206ENST00000538970 AASDHPPTQ9NRN7 309 aa12.88□□□□□ -0.35
VAMP1-206ENST00000538970 FTSJ1Q9UET6 329 aa12.88□□□□□ -0.35
VAMP1-206ENST00000538970 HS3ST4Q9Y661 456 aa12.88□□□□□ -0.35
VAMP1-206ENST00000538970 PTPRBP23467 1997 aa12.87□□□□□ -0.35
VAMP1-206ENST00000538970 SLC7A4O43246 635 aa12.87□□□□□ -0.35
VAMP1-206ENST00000538970 ATP9BO43861 1147 aa12.87□□□□□ -0.35
VAMP1-206ENST00000538970 PNMA6AP0CW24 399 aaPredicted RBP12.87□□□□□ -0.35
VAMP1-206ENST00000538970 GGCXP38435 758 aa12.87□□□□□ -0.35
VAMP1-206ENST00000538970 NXPH1P58417 271 aa12.87□□□□□ -0.35
VAMP1-206ENST00000538970 SLC6A3Q01959 620 aa12.87□□□□□ -0.35
VAMP1-206ENST00000538970 PTK2Q05397 1052 aa12.87□□□□□ -0.35
VAMP1-206ENST00000538970 NME3Q13232 169 aa12.87□□□□□ -0.35
VAMP1-206ENST00000538970 SMAD1Q15797 465 aaKnown RBP12.87□□□□□ -0.35
VAMP1-206ENST00000538970 OR6B2Q6IFH4 312 aa12.87□□□□□ -0.35
VAMP1-206ENST00000538970 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.87□□□□□ -0.35
VAMP1-206ENST00000538970 MARCH9Q86YJ5 346 aa12.87□□□□□ -0.35
VAMP1-206ENST00000538970 GATAD2AQ86YP4 633 aa12.87□□□□□ -0.35
VAMP1-206ENST00000538970 ZNF397Q8NF99 534 aaPredicted RBP12.87□□□□□ -0.35
VAMP1-206ENST00000538970 SAP25Q8TEE9 199 aa12.87□□□□□ -0.35
VAMP1-206ENST00000538970 OR8D1Q8WZ84 308 aa12.87□□□□□ -0.35
VAMP1-206ENST00000538970 SERAC1Q96JX3 654 aa12.87□□□□□ -0.35
VAMP1-206ENST00000538970 FEM1AQ9BSK4 669 aa12.87□□□□□ -0.35
VAMP1-206ENST00000538970 GDF3Q9NR23 364 aa12.87□□□□□ -0.35
VAMP1-206ENST00000538970 DKK4Q9UBT3 224 aa12.87□□□□□ -0.35
VAMP1-206ENST00000538970 SLC25A13Q9UJS0 675 aa12.87□□□□□ -0.35
VAMP1-206ENST00000538970 VANGL2Q9ULK5 521 aa12.87□□□□□ -0.35
VAMP1-206ENST00000538970 OR51B4Q9Y5P0 310 aa12.87□□□□□ -0.35
VAMP1-206ENST00000538970 COL5A1P20908 1838 aaPredicted RBP12.87□□□□□ -0.35
VAMP1-206ENST00000538970 TBC1D3DA0A087WVF3 549 aa12.86□□□□□ -0.35
VAMP1-206ENST00000538970 TBC1D3IA0A087WXS9 549 aa12.86□□□□□ -0.35
VAMP1-206ENST00000538970 TBC1D3EA0A087X179 549 aa12.86□□□□□ -0.35
VAMP1-206ENST00000538970 TBC1D3KA0A087X1G2 549 aa12.86□□□□□ -0.35
VAMP1-206ENST00000538970 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.86□□□□□ -0.35
VAMP1-206ENST00000538970 TBC1D3FA6NER0 549 aaPredicted RBP12.86□□□□□ -0.35
VAMP1-206ENST00000538970 TBC1D3LB9A6J9 549 aa12.86□□□□□ -0.35
VAMP1-206ENST00000538970 PLK4O00444 970 aa12.86□□□□□ -0.35
VAMP1-206ENST00000538970 ALOX15BO15296 676 aa12.86□□□□□ -0.35
VAMP1-206ENST00000538970 YKT6O15498 198 aa12.86□□□□□ -0.35
VAMP1-206ENST00000538970 PLRG1O43660 514 aaKnown RBP12.86□□□□□ -0.35
VAMP1-206ENST00000538970 RTN2O75298 545 aa12.86□□□□□ -0.35
VAMP1-206ENST00000538970 PAGE1O75459 146 aa12.86□□□□□ -0.35
VAMP1-206ENST00000538970 CLDN11O75508 207 aa12.86□□□□□ -0.35
VAMP1-206ENST00000538970 TBC1D3HP0C7X1 549 aa12.86□□□□□ -0.35
VAMP1-206ENST00000538970 EPHA8P29322 1005 aaPredicted RBP12.86□□□□□ -0.35
VAMP1-206ENST00000538970 NOS2P35228 1153 aa12.86□□□□□ -0.35
VAMP1-206ENST00000538970 CLCN1P35523 988 aa12.86□□□□□ -0.35
VAMP1-206ENST00000538970 MTIF2P46199 727 aaKnown RBP12.86□□□□□ -0.35
VAMP1-206ENST00000538970 UBE2HP62256 183 aa12.86□□□□□ -0.35
VAMP1-206ENST00000538970 ZNF177Q13360 481 aaPredicted RBP12.86□□□□□ -0.35
VAMP1-206ENST00000538970 CAMK2BQ13554 666 aa12.86□□□□□ -0.35
VAMP1-206ENST00000538970 C5orf22Q49AR2 442 aa12.86□□□□□ -0.35
VAMP1-206ENST00000538970 CCDC157Q569K6 752 aa12.86□□□□□ -0.35
VAMP1-206ENST00000538970 SLC45A4Q5BKX6 768 aa12.86□□□□□ -0.35
VAMP1-206ENST00000538970 TBC1D3GQ6DHY5 549 aa12.86□□□□□ -0.35
VAMP1-206ENST00000538970 TBC1D3CQ6IPX1 549 aa12.86□□□□□ -0.35
VAMP1-206ENST00000538970 NAPEPLDQ6IQ20 393 aa12.86□□□□□ -0.35
VAMP1-206ENST00000538970 DHRS13Q6UX07 377 aa12.86□□□□□ -0.35
VAMP1-206ENST00000538970 DSG4Q86SJ6 1040 aa12.86□□□□□ -0.35
VAMP1-206ENST00000538970 C14orf80Q86SX3 495 aa12.86□□□□□ -0.35
VAMP1-206ENST00000538970 SLC47A2Q86VL8 602 aa12.86□□□□□ -0.35
VAMP1-206ENST00000538970 TBC1D3Q8IZP1 549 aaPredicted RBP12.86□□□□□ -0.35
VAMP1-206ENST00000538970 PPP1R9BQ96SB3 815 aa12.86□□□□□ -0.35
VAMP1-206ENST00000538970 KDM4CQ9H3R0 1056 aa12.86□□□□□ -0.35
VAMP1-206ENST00000538970 PLCB1Q9NQ66 1216 aa12.86□□□□□ -0.35
VAMP1-206ENST00000538970 PIGVQ9NUD9 493 aa12.86□□□□□ -0.35
VAMP1-206ENST00000538970 ARHGAP20Q9P2F6 1191 aa12.86□□□□□ -0.35
VAMP1-206ENST00000538970 VPS28Q9UK41 221 aa12.86□□□□□ -0.35
VAMP1-206ENST00000538970 DNAJC12Q9UKB3 198 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms