RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 FRS2Q8WU20 508 aa15.2■□□□□ 0.02
USP28-204ENST00000537642 DNASE2BQ8WZ79 361 aa15.2■□□□□ 0.02
USP28-204ENST00000537642 PPP1R9BQ96SB3 815 aa15.2■□□□□ 0.02
USP28-204ENST00000537642 FAM129BQ96TA1 746 aa15.2■□□□□ 0.02
USP28-204ENST00000537642 PSMB7Q99436 277 aa15.2■□□□□ 0.02
USP28-204ENST00000537642 NUSAP1Q9BXS6 441 aaKnown RBP15.2■□□□□ 0.02
USP28-204ENST00000537642 PABPC3Q9H361 631 aaKnown RBP15.2■□□□□ 0.02
USP28-204ENST00000537642 CAPN10Q9HC96 672 aa15.2■□□□□ 0.02
USP28-204ENST00000537642 FSCN3Q9NQT6 498 aa15.2■□□□□ 0.02
USP28-204ENST00000537642 AIPL1Q9NZN9 384 aa15.2■□□□□ 0.02
USP28-204ENST00000537642 ZNF212Q9UDV6 495 aa15.2■□□□□ 0.02
USP28-204ENST00000537642 VPS28Q9UK41 221 aa15.2■□□□□ 0.02
USP28-204ENST00000537642 METTL12A8MUP2 240 aa15.19■□□□□ 0.02
USP28-204ENST00000537642 MEI4A8MW99 385 aa15.19■□□□□ 0.02
USP28-204ENST00000537642 SERPINF2P08697 491 aa15.19■□□□□ 0.02
USP28-204ENST00000537642 GPD1P21695 349 aa15.19■□□□□ 0.02
USP28-204ENST00000537642 NNMTP40261 264 aa15.19■□□□□ 0.02
USP28-204ENST00000537642 PBX1P40424 430 aa15.19■□□□□ 0.02
USP28-204ENST00000537642 PRKCIP41743 596 aa15.19■□□□□ 0.02
USP28-204ENST00000537642 TPM4P67936 248 aa15.19■□□□□ 0.02
USP28-204ENST00000537642 CST6Q15828 149 aa15.19■□□□□ 0.02
USP28-204ENST00000537642 TTC31Q49AM3 519 aaPredicted RBP15.19■□□□□ 0.02
USP28-204ENST00000537642 WDR45BQ5MNZ6 344 aa15.19■□□□□ 0.02
USP28-204ENST00000537642 PPP1R15BQ5SWA1 713 aa15.19■□□□□ 0.02
USP28-204ENST00000537642 DCAF12L1Q5VU92 463 aa15.19■□□□□ 0.02
USP28-204ENST00000537642 SFMBT2Q5VUG0 894 aa15.19■□□□□ 0.02
USP28-204ENST00000537642 DNAJC24Q6P3W2 148 aa15.19■□□□□ 0.02
USP28-204ENST00000537642 ZNF571Q7Z3V5 609 aaPredicted RBP15.19■□□□□ 0.02
USP28-204ENST00000537642 SETD3Q86TU7 594 aaPredicted RBP15.19■□□□□ 0.02
USP28-204ENST00000537642 MMAAQ8IVH4 418 aaKnown RBP15.19■□□□□ 0.02
USP28-204ENST00000537642 STK40Q8N2I9 435 aa15.19■□□□□ 0.02
USP28-204ENST00000537642 FAM172AQ8WUF8 416 aa15.19■□□□□ 0.02
USP28-204ENST00000537642 MAGEB5Q9BZ81 275 aa15.19■□□□□ 0.02
USP28-204ENST00000537642 EDEM3Q9BZQ6 932 aa15.19■□□□□ 0.02
USP28-204ENST00000537642 MUC3BQ9H195 1237 aa15.19■□□□□ 0.02
USP28-204ENST00000537642 HAUS4Q9H6D7 363 aa15.19■□□□□ 0.02
USP28-204ENST00000537642 C6orf106Q9H6K1 298 aaPredicted RBP15.19■□□□□ 0.02
USP28-204ENST00000537642 TMEM9BQ9NQ34 198 aa15.19■□□□□ 0.02
USP28-204ENST00000537642 SLC25A13Q9UJS0 675 aa15.19■□□□□ 0.02
USP28-204ENST00000537642 SLC6A14Q9UN76 642 aa15.19■□□□□ 0.02
USP28-204ENST00000537642 CHD5Q8TDI0 1954 aa15.18■□□□□ 0.02
USP28-204ENST00000537642 A0A0D9SEW6 157 aa15.18■□□□□ 0.02
USP28-204ENST00000537642 TMCO5BA8MYB1 307 aa15.18■□□□□ 0.02
USP28-204ENST00000537642 MID1O15344 667 aa15.18■□□□□ 0.02
USP28-204ENST00000537642 CCP110O43303 1012 aa15.18■□□□□ 0.02
USP28-204ENST00000537642 ATP9BO43861 1147 aa15.18■□□□□ 0.02
USP28-204ENST00000537642 SNAP91O60641 907 aa15.18■□□□□ 0.02
USP28-204ENST00000537642 RNASEH1O60930 286 aaKnown RBP15.18■□□□□ 0.02
USP28-204ENST00000537642 ENGP17813 658 aa15.18■□□□□ 0.02
USP28-204ENST00000537642 RRM1P23921 792 aa15.18■□□□□ 0.02
USP28-204ENST00000537642 OR1E1P30953 314 aa15.18■□□□□ 0.02
USP28-204ENST00000537642 UBASH3AP57075 661 aa15.18■□□□□ 0.02
USP28-204ENST00000537642 RPL7AP62424 266 aaKnown RBP15.18■□□□□ 0.02
USP28-204ENST00000537642 NRG1Q02297 640 aaPredicted RBP15.18■□□□□ 0.02
USP28-204ENST00000537642 SKOR2Q2VWA4 1001 aaPredicted RBP15.18■□□□□ 0.02
USP28-204ENST00000537642 ARL13BQ3SXY8 428 aa15.18■□□□□ 0.02
USP28-204ENST00000537642 FIGNQ5HY92 759 aa15.18■□□□□ 0.02
USP28-204ENST00000537642 MANEALQ5VSG8 457 aa15.18■□□□□ 0.02
USP28-204ENST00000537642 USP30Q70CQ3 517 aa15.18■□□□□ 0.02
USP28-204ENST00000537642 RABEPKQ7Z6M1 372 aa15.18■□□□□ 0.02
USP28-204ENST00000537642 DNAAF5Q86Y56 855 aa15.18■□□□□ 0.02
USP28-204ENST00000537642 SH2D3CQ8N5H7 860 aa15.18■□□□□ 0.02
USP28-204ENST00000537642 CCDC185Q8N715 623 aa15.18■□□□□ 0.02
USP28-204ENST00000537642 VCPIP1Q96JH7 1222 aa15.18■□□□□ 0.02
USP28-204ENST00000537642 MCEEQ96PE7 176 aa15.18■□□□□ 0.02
USP28-204ENST00000537642 ZYG11BQ9C0D3 744 aa15.18■□□□□ 0.02
USP28-204ENST00000537642 BTBD1Q9H0C5 482 aa15.18■□□□□ 0.02
USP28-204ENST00000537642 OSBPL2Q9H1P3 480 aa15.18■□□□□ 0.02
USP28-204ENST00000537642 PCED1AQ9H1Q7 454 aa15.18■□□□□ 0.02
USP28-204ENST00000537642 PPARGC1AQ9UBK2 798 aaKnown RBP15.18■□□□□ 0.02
USP28-204ENST00000537642 OR12D3Q9UGF7 316 aa15.18■□□□□ 0.02
USP28-204ENST00000537642 SERGEFQ9UGK8 458 aa15.18■□□□□ 0.02
USP28-204ENST00000537642 VPS51Q9UID3 782 aa15.18■□□□□ 0.02
USP28-204ENST00000537642 SCML1Q9UN30 329 aa15.18■□□□□ 0.02
USP28-204ENST00000537642 A0A1W2PP55 124 aa15.17■□□□□ 0.02
USP28-204ENST00000537642 FAM72CH0Y354 149 aa15.17■□□□□ 0.02
USP28-204ENST00000537642 GOLGA6L19H0YKK7 550 aa15.17■□□□□ 0.02
USP28-204ENST00000537642 SEMA4FO95754 770 aa15.17■□□□□ 0.02
USP28-204ENST00000537642 MT-CO1P00395 513 aa15.17■□□□□ 0.02
USP28-204ENST00000537642 SKILP12757 684 aa15.17■□□□□ 0.02
USP28-204ENST00000537642 SLC8A1P32418 973 aa15.17■□□□□ 0.02
USP28-204ENST00000537642 MAPK8P45983 427 aa15.17■□□□□ 0.02
USP28-204ENST00000537642 PSMD8P48556 350 aa15.17■□□□□ 0.02
USP28-204ENST00000537642 ZNF143P52747 638 aaPredicted RBP15.17■□□□□ 0.02
USP28-204ENST00000537642 OGDHQ02218 1023 aa15.17■□□□□ 0.02
USP28-204ENST00000537642 ELAVL3Q14576 367 aaKnown RBP15.17■□□□□ 0.02
USP28-204ENST00000537642 DLG2Q15700 870 aa15.17■□□□□ 0.02
USP28-204ENST00000537642 ACCSLQ4AC99 568 aa15.17■□□□□ 0.02
USP28-204ENST00000537642 PPM1JQ5JR12 505 aa15.17■□□□□ 0.02
USP28-204ENST00000537642 C6orf118Q5T5N4 469 aa15.17■□□□□ 0.02
USP28-204ENST00000537642 FAM72AQ5TYM5 149 aa15.17■□□□□ 0.02
USP28-204ENST00000537642 FAM72DQ6L9T8 149 aa15.17■□□□□ 0.02
USP28-204ENST00000537642 FAM72BQ86X60 149 aa15.17■□□□□ 0.02
USP28-204ENST00000537642 DCAF4L2Q8NA75 395 aa15.17■□□□□ 0.02
USP28-204ENST00000537642 OR7D4Q8NG98 312 aa15.17■□□□□ 0.02
USP28-204ENST00000537642 NTAN1Q96AB6 310 aa15.17■□□□□ 0.02
USP28-204ENST00000537642 C2orf49Q9BVC5 232 aaPredicted RBP15.17■□□□□ 0.02
USP28-204ENST00000537642 SGK2Q9HBY8 427 aa15.17■□□□□ 0.02
USP28-204ENST00000537642 FBXL12Q9NXK8 326 aa15.17■□□□□ 0.02
USP28-204ENST00000537642 SUSD2Q9UGT4 822 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms