RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 A0A1W2PQH9 124 aa12.29□□□□□ -0.44
CLIP1-208ENST00000537004 APOC4-APOC2K7ER74 178 aa12.29□□□□□ -0.44
CLIP1-208ENST00000537004 MDM4O15151 490 aa12.29□□□□□ -0.44
CLIP1-208ENST00000537004 TLR5O60602 858 aa12.29□□□□□ -0.44
CLIP1-208ENST00000537004 APOC2P02655 101 aa12.29□□□□□ -0.44
CLIP1-208ENST00000537004 ZSCAN5DPP0CG00 497 aa12.29□□□□□ -0.44
CLIP1-208ENST00000537004 ETS1P14921 441 aa12.29□□□□□ -0.44
CLIP1-208ENST00000537004 TFE3P19532 575 aaPredicted RBP12.29□□□□□ -0.44
CLIP1-208ENST00000537004 HDAC4P56524 1084 aa12.29□□□□□ -0.44
CLIP1-208ENST00000537004 KRT81Q14533 505 aa12.29□□□□□ -0.44
CLIP1-208ENST00000537004 AGBL2Q5U5Z8 902 aa12.29□□□□□ -0.44
CLIP1-208ENST00000537004 HIBCHQ6NVY1 386 aaPredicted RBP12.29□□□□□ -0.44
CLIP1-208ENST00000537004 KDM7AQ6ZMT4 941 aa12.29□□□□□ -0.44
CLIP1-208ENST00000537004 PIGZQ86VD9 579 aa12.29□□□□□ -0.44
CLIP1-208ENST00000537004 HOOK3Q86VS8 718 aa12.29□□□□□ -0.44
CLIP1-208ENST00000537004 RALGPS2Q86X27 583 aaPredicted RBP12.29□□□□□ -0.44
CLIP1-208ENST00000537004 MAP7D3Q8IWC1 876 aa12.29□□□□□ -0.44
CLIP1-208ENST00000537004 PDZD8Q8NEN9 1154 aa12.29□□□□□ -0.44
CLIP1-208ENST00000537004 TEKT4Q8WW24 435 aa12.29□□□□□ -0.44
CLIP1-208ENST00000537004 TBCBQ99426 244 aa12.29□□□□□ -0.44
CLIP1-208ENST00000537004 NCAPGQ9BPX3 1015 aa12.29□□□□□ -0.44
CLIP1-208ENST00000537004 MAK16Q9BXY0 300 aaKnown RBP12.29□□□□□ -0.44
CLIP1-208ENST00000537004 CDC42EP4Q9H3Q1 356 aaKnown RBP12.29□□□□□ -0.44
CLIP1-208ENST00000537004 C8orf33Q9H7E9 229 aaPredicted RBP12.29□□□□□ -0.44
CLIP1-208ENST00000537004 C2orf42Q9NWW7 574 aa12.29□□□□□ -0.44
CLIP1-208ENST00000537004 SCML2Q9UQR0 700 aa12.29□□□□□ -0.44
CLIP1-208ENST00000537004 LAMA1P25391 3075 aa12.29□□□□□ -0.44
CLIP1-208ENST00000537004 ERICH4A6NGS2 130 aa12.28□□□□□ -0.44
CLIP1-208ENST00000537004 DNALI1O14645 258 aaPredicted RBP12.28□□□□□ -0.44
CLIP1-208ENST00000537004 SHOX2O60902 331 aaPredicted RBP12.28□□□□□ -0.44
CLIP1-208ENST00000537004 PECAM1P16284 738 aaPredicted RBP12.28□□□□□ -0.44
CLIP1-208ENST00000537004 GJA4P35212 333 aa12.28□□□□□ -0.44
CLIP1-208ENST00000537004 IFNAR2P48551 515 aa12.28□□□□□ -0.44
CLIP1-208ENST00000537004 SKOR1P84550 965 aa12.28□□□□□ -0.44
CLIP1-208ENST00000537004 ADIGQ0VDE8 80 aa12.28□□□□□ -0.44
CLIP1-208ENST00000537004 GPS1Q13098 491 aa12.28□□□□□ -0.44
CLIP1-208ENST00000537004 PDK2Q15119 407 aa12.28□□□□□ -0.44
CLIP1-208ENST00000537004 EFHC1Q5JVL4 640 aa12.28□□□□□ -0.44
CLIP1-208ENST00000537004 SNX30Q5VWJ9 437 aa12.28□□□□□ -0.44
CLIP1-208ENST00000537004 SCD5Q86SK9 330 aa12.28□□□□□ -0.44
CLIP1-208ENST00000537004 OVCA2Q8WZ82 227 aa12.28□□□□□ -0.44
CLIP1-208ENST00000537004 CENPIQ92674 756 aaPredicted RBP12.28□□□□□ -0.44
CLIP1-208ENST00000537004 SNRNP25Q9BV90 132 aaKnown RBP12.28□□□□□ -0.44
CLIP1-208ENST00000537004 CAPS2Q9BXY5 557 aa12.28□□□□□ -0.44
CLIP1-208ENST00000537004 ADAM33Q9BZ11 813 aa12.28□□□□□ -0.44
CLIP1-208ENST00000537004 NACA2Q9H009 215 aa12.28□□□□□ -0.44
CLIP1-208ENST00000537004 PCDH9Q9HC56 1237 aa12.28□□□□□ -0.44
CLIP1-208ENST00000537004 DNAJC17Q9NVM6 304 aaKnown RBP12.28□□□□□ -0.44
CLIP1-208ENST00000537004 BCCIPQ9P287 314 aaKnown RBP eCLIP12.28□□□□□ -0.44
CLIP1-208ENST00000537004 R4GN57 208 aa12.28□□□□□ -0.44
CLIP1-208ENST00000537004 DNAH14Q0VDD8 3507 aa12.28□□□□□ -0.44
CLIP1-208ENST00000537004 DCHS1Q96JQ0 3298 aa12.28□□□□□ -0.44
CLIP1-208ENST00000537004 ANTXRLA6NF34 631 aa12.28□□□□□ -0.44
CLIP1-208ENST00000537004 NCAM2O15394 837 aa12.28□□□□□ -0.44
CLIP1-208ENST00000537004 IFNB1P01574 187 aa12.28□□□□□ -0.44
CLIP1-208ENST00000537004 IRF1P10914 325 aa12.28□□□□□ -0.44
CLIP1-208ENST00000537004 RPS9P46781 194 aaKnown RBP12.28□□□□□ -0.44
CLIP1-208ENST00000537004 ATP1A2P50993 1020 aa12.28□□□□□ -0.44
CLIP1-208ENST00000537004 TFDP2Q14188 446 aa12.28□□□□□ -0.44
CLIP1-208ENST00000537004 PDGFRLQ15198 375 aa12.28□□□□□ -0.44
CLIP1-208ENST00000537004 ZC3H12AQ5D1E8 599 aaKnown RBP12.28□□□□□ -0.44
CLIP1-208ENST00000537004 EMC10Q5UCC4 262 aa12.28□□□□□ -0.44
CLIP1-208ENST00000537004 UHMK1Q8TAS1 419 aaKnown RBP12.28□□□□□ -0.44
CLIP1-208ENST00000537004 PWWP2AQ96N64 755 aa12.28□□□□□ -0.44
CLIP1-208ENST00000537004 C10orf88Q9H8K7 445 aa12.28□□□□□ -0.44
CLIP1-208ENST00000537004 PNPLA8Q9NP80 782 aa12.28□□□□□ -0.44
CLIP1-208ENST00000537004 TLR8Q9NR97 1041 aaKnown RBP12.28□□□□□ -0.44
CLIP1-208ENST00000537004 GPATCH2LQ9NWQ4 482 aa12.28□□□□□ -0.44
CLIP1-208ENST00000537004 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.28□□□□□ -0.44
CLIP1-208ENST00000537004 USP3Q9Y6I4 520 aa12.28□□□□□ -0.44
CLIP1-208ENST00000537004 LAMTOR5O43504 91 aa12.27□□□□□ -0.44
CLIP1-208ENST00000537004 ACSL3O95573 720 aa12.27□□□□□ -0.44
CLIP1-208ENST00000537004 SP9P0CG40 484 aa12.27□□□□□ -0.44
CLIP1-208ENST00000537004 IL4RP24394 825 aa12.27□□□□□ -0.44
CLIP1-208ENST00000537004 HPDP32754 393 aaPredicted RBP12.27□□□□□ -0.44
CLIP1-208ENST00000537004 MLLT6P55198 1093 aaPredicted RBP12.27□□□□□ -0.44
CLIP1-208ENST00000537004 EIF3EP60228 445 aaKnown RBP12.27□□□□□ -0.44
CLIP1-208ENST00000537004 CSTF1Q05048 431 aaKnown RBP12.27□□□□□ -0.44
CLIP1-208ENST00000537004 MESP2Q0VG99 397 aa12.27□□□□□ -0.44
CLIP1-208ENST00000537004 CCINQ13939 588 aa12.27□□□□□ -0.44
CLIP1-208ENST00000537004 PKN3Q6P5Z2 889 aa12.27□□□□□ -0.44
CLIP1-208ENST00000537004 VSIG1Q86XK7 387 aa12.27□□□□□ -0.44
CLIP1-208ENST00000537004 ADGRG2Q8IZP9 1017 aa12.27□□□□□ -0.44
CLIP1-208ENST00000537004 ZCCHC9Q8N567 271 aaKnown RBP12.27□□□□□ -0.44
CLIP1-208ENST00000537004 KCTD13Q8WZ19 329 aa12.27□□□□□ -0.44
CLIP1-208ENST00000537004 ATP2A3Q93084 1043 aa12.27□□□□□ -0.44
CLIP1-208ENST00000537004 RNF157Q96PX1 679 aa12.27□□□□□ -0.44
CLIP1-208ENST00000537004 FOXP3Q9BZS1 431 aa12.27□□□□□ -0.44
CLIP1-208ENST00000537004 CHRDQ9H2X0 955 aa12.27□□□□□ -0.44
CLIP1-208ENST00000537004 PCDH18Q9HCL0 1135 aa12.27□□□□□ -0.44
CLIP1-208ENST00000537004 POLR3BQ9NW08 1133 aaPredicted RBP12.27□□□□□ -0.44
CLIP1-208ENST00000537004 COMMD8Q9NX08 183 aa12.27□□□□□ -0.44
CLIP1-208ENST00000537004 TPX2Q9ULW0 747 aaKnown RBP12.27□□□□□ -0.44
CLIP1-208ENST00000537004 ZNF292O60281 2723 aa12.27□□□□□ -0.45
CLIP1-208ENST00000537004 MCF2LO15068 1137 aa12.27□□□□□ -0.45
CLIP1-208ENST00000537004 TTC4O95801 387 aa12.27□□□□□ -0.45
CLIP1-208ENST00000537004 TCF3P15923 654 aa12.27□□□□□ -0.45
CLIP1-208ENST00000537004 PFKLP17858 780 aa12.27□□□□□ -0.45
CLIP1-208ENST00000537004 MATKP42679 507 aa12.27□□□□□ -0.45
CLIP1-208ENST00000537004 GALK1P51570 392 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms