RNA–Protein interactions for RNA: ENST00000533018.1

PCF11-206, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-206ENST00000533018 ADAMTS1Q9UHI8 967 aa18.34■□□□□ 0.53
PCF11-206ENST00000533018 VPS28Q9UK41 221 aa18.34■□□□□ 0.53
PCF11-206ENST00000533018 HS3ST4Q9Y661 456 aa18.34■□□□□ 0.53
PCF11-206ENST00000533018 PLXNB3Q9ULL4 1909 aa18.33■□□□□ 0.53
PCF11-206ENST00000533018 VILLO15195 856 aa18.33■□□□□ 0.52
PCF11-206ENST00000533018 DFNA5O60443 496 aa18.33■□□□□ 0.52
PCF11-206ENST00000533018 PAGE1O75459 146 aa18.33■□□□□ 0.52
PCF11-206ENST00000533018 DAB1O75553 588 aa18.33■□□□□ 0.52
PCF11-206ENST00000533018 ZNF18P17022 549 aa18.33■□□□□ 0.52
PCF11-206ENST00000533018 CTSKP43235 329 aa18.33■□□□□ 0.52
PCF11-206ENST00000533018 GRK6P43250 576 aa18.33■□□□□ 0.52
PCF11-206ENST00000533018 PLK1P53350 603 aa18.33■□□□□ 0.52
PCF11-206ENST00000533018 ADPRHP54922 357 aa18.33■□□□□ 0.52
PCF11-206ENST00000533018 SCAPQ12770 1279 aa18.33■□□□□ 0.52
PCF11-206ENST00000533018 CXorf57Q6NSI4 855 aaKnown RBP18.33■□□□□ 0.52
PCF11-206ENST00000533018 SLC26A9Q7LBE3 791 aa18.33■□□□□ 0.52
PCF11-206ENST00000533018 DSG4Q86SJ6 1040 aa18.33■□□□□ 0.52
PCF11-206ENST00000533018 TMEM35BQ8NCS4 154 aa18.33■□□□□ 0.52
PCF11-206ENST00000533018 BAHD1Q8TBE0 780 aaPredicted RBP18.33■□□□□ 0.52
PCF11-206ENST00000533018 OR8D1Q8WZ84 308 aa18.33■□□□□ 0.52
PCF11-206ENST00000533018 SPAG5Q96R06 1193 aa18.33■□□□□ 0.52
PCF11-206ENST00000533018 MUC3BQ9H195 1237 aa18.33■□□□□ 0.52
PCF11-206ENST00000533018 CLSTN2Q9H4D0 955 aa18.33■□□□□ 0.52
PCF11-206ENST00000533018 WDCPQ9H6R7 721 aa18.33■□□□□ 0.52
PCF11-206ENST00000533018 EBF2Q9HAK2 575 aa18.33■□□□□ 0.52
PCF11-206ENST00000533018 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP18.33■□□□□ 0.529e-23■□□□□ 9.2
PCF11-206ENST00000533018 DACH1Q9UI36 760 aa18.33■□□□□ 0.52
PCF11-206ENST00000533018 PLK4O00444 970 aa18.32■□□□□ 0.52
PCF11-206ENST00000533018 CLDN11O75508 207 aa18.32■□□□□ 0.52
PCF11-206ENST00000533018 CD38P28907 300 aa18.32■□□□□ 0.52
PCF11-206ENST00000533018 SULT1E1P49888 294 aa18.32■□□□□ 0.52
PCF11-206ENST00000533018 INAVAQ3KP66 663 aa18.32■□□□□ 0.52
PCF11-206ENST00000533018 DPCR1Q3MIW9 517 aa18.32■□□□□ 0.52
PCF11-206ENST00000533018 ZDHHC17Q8IUH5 632 aa18.32■□□□□ 0.52
PCF11-206ENST00000533018 FRS2Q8WU20 508 aa18.32■□□□□ 0.52
PCF11-206ENST00000533018 SERAC1Q96JX3 654 aa18.32■□□□□ 0.52
PCF11-206ENST00000533018 FEM1AQ9BSK4 669 aa18.32■□□□□ 0.52
PCF11-206ENST00000533018 TKTL2Q9H0I9 626 aa18.32■□□□□ 0.52
PCF11-206ENST00000533018 PIGVQ9NUD9 493 aa18.32■□□□□ 0.52
PCF11-206ENST00000533018 STAP1Q9ULZ2 295 aa18.32■□□□□ 0.52
PCF11-206ENST00000533018 ZFYVE26Q68DK2 2539 aa18.32■□□□□ 0.52
PCF11-206ENST00000533018 DOCK9Q9BZ29 2069 aa18.31■□□□□ 0.52
PCF11-206ENST00000533018 TNFSF14O43557 240 aa18.31■□□□□ 0.52
PCF11-206ENST00000533018 PCDHGA12O60330 932 aa18.31■□□□□ 0.52
PCF11-206ENST00000533018 IRAK1P51617 712 aa18.31■□□□□ 0.52
PCF11-206ENST00000533018 CCR5P51681 352 aa18.31■□□□□ 0.52
PCF11-206ENST00000533018 DEUP1Q05D60 604 aa18.31■□□□□ 0.52
PCF11-206ENST00000533018 KCNJ12Q14500 433 aa18.31■□□□□ 0.52
PCF11-206ENST00000533018 DRAP1Q14919 205 aaPredicted RBP18.31■□□□□ 0.52
PCF11-206ENST00000533018 DLG2Q15700 870 aa18.31■□□□□ 0.52
PCF11-206ENST00000533018 POM121L1PQ3SYA9 428 aa18.31■□□□□ 0.52
PCF11-206ENST00000533018 SLC45A4Q5BKX6 768 aa18.31■□□□□ 0.52
PCF11-206ENST00000533018 TAF3Q5VWG9 929 aa18.31■□□□□ 0.52
PCF11-206ENST00000533018 FAM46CQ5VWP2 391 aa18.31■□□□□ 0.52
PCF11-206ENST00000533018 CCNI2Q6ZMN8 369 aaPredicted RBP18.31■□□□□ 0.52
PCF11-206ENST00000533018 C14orf80Q86SX3 495 aa18.31■□□□□ 0.52
PCF11-206ENST00000533018 FAM71AQ8IYT1 594 aa18.31■□□□□ 0.52
PCF11-206ENST00000533018 OR52K2Q8NGK3 314 aa18.31■□□□□ 0.52
PCF11-206ENST00000533018 ELF4Q99607 663 aaPredicted RBP18.31■□□□□ 0.52
PCF11-206ENST00000533018 TOR4AQ9NXH8 423 aa18.31■□□□□ 0.52
PCF11-206ENST00000533018 RRN3Q9NYV6 651 aa18.31■□□□□ 0.52
PCF11-206ENST00000533018 C1QTNF3-AMACRE9PGA6 284 aa18.3■□□□□ 0.52
PCF11-206ENST00000533018 WNT9AO14904 365 aa18.3■□□□□ 0.52
PCF11-206ENST00000533018 RTN2O75298 545 aa18.3■□□□□ 0.52
PCF11-206ENST00000533018 ADCY5O95622 1261 aa18.3■□□□□ 0.52
PCF11-206ENST00000533018 WNT1P04628 370 aa18.3■□□□□ 0.52
PCF11-206ENST00000533018 RHOCP08134 193 aa18.3■□□□□ 0.52
PCF11-206ENST00000533018 ERCC5P28715 1186 aaPredicted RBP18.3■□□□□ 0.52
PCF11-206ENST00000533018 MAT2AP31153 395 aaKnown RBP18.3■□□□□ 0.52
PCF11-206ENST00000533018 DRD3P35462 400 aa18.3■□□□□ 0.52
PCF11-206ENST00000533018 METAP1P53582 386 aa18.3■□□□□ 0.52
PCF11-206ENST00000533018 CDH4P55283 916 aa18.3■□□□□ 0.52
PCF11-206ENST00000533018 PPP2CBP62714 309 aa18.3■□□□□ 0.52
PCF11-206ENST00000533018 PPP2CAP67775 309 aa18.3■□□□□ 0.52
PCF11-206ENST00000533018 MIIPQ5JXC2 388 aa18.3■□□□□ 0.52
PCF11-206ENST00000533018 BRMS1LQ5PSV4 323 aa18.3■□□□□ 0.52
PCF11-206ENST00000533018 FAM102AQ5T9C2 384 aaPredicted RBP18.3■□□□□ 0.52
PCF11-206ENST00000533018 LRRC31Q6UY01 552 aa18.3■□□□□ 0.52
PCF11-206ENST00000533018 Q6ZVU0 165 aa18.3■□□□□ 0.52
PCF11-206ENST00000533018 PRPF39Q86UA1 669 aaKnown RBP18.3■□□□□ 0.52
PCF11-206ENST00000533018 ERICH1Q86X53 443 aa18.3■□□□□ 0.52
PCF11-206ENST00000533018 GATAD2AQ86YP4 633 aa18.3■□□□□ 0.52
PCF11-206ENST00000533018 ZNF397Q8NF99 534 aaPredicted RBP18.3■□□□□ 0.52
PCF11-206ENST00000533018 C18orf8Q96DM3 657 aa18.3■□□□□ 0.52
PCF11-206ENST00000533018 NUP62CLQ9H1M0 184 aa18.3■□□□□ 0.52
PCF11-206ENST00000533018 CCDC86Q9H6F5 360 aaKnown RBP18.3■□□□□ 0.52
PCF11-206ENST00000533018 GDF3Q9NR23 364 aa18.3■□□□□ 0.52
PCF11-206ENST00000533018 FTSJ1Q9UET6 329 aa18.3■□□□□ 0.52
PCF11-206ENST00000533018 FARP1Q9Y4F1 1045 aaPredicted RBP18.3■□□□□ 0.52
PCF11-206ENST00000533018 PAXBP1Q9Y5B6 917 aa18.3■□□□□ 0.52
PCF11-206ENST00000533018 FHOD1Q9Y613 1164 aa18.3■□□□□ 0.52
PCF11-206ENST00000533018 NBEAQ8NFP9 2946 aa18.3■□□□□ 0.52
PCF11-206ENST00000533018 CACNA1GO43497 2377 aa18.3■□□□□ 0.52
PCF11-206ENST00000533018 CELSR3Q9NYQ7 3312 aa18.29■□□□□ 0.52
PCF11-206ENST00000533018 A0A1B0GTQ1 180 aa18.29■□□□□ 0.52
PCF11-206ENST00000533018 ATP9BO43861 1147 aa18.29■□□□□ 0.52
PCF11-206ENST00000533018 CNTN5O94779 1100 aa18.29■□□□□ 0.52
PCF11-206ENST00000533018 F9P00740 461 aa18.29■□□□□ 0.52
PCF11-206ENST00000533018 ITGAVP06756 1048 aa18.29■□□□□ 0.52
PCF11-206ENST00000533018 CYP11B1P15538 503 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms