RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 FAM193AP78312 1265 aa10.46□□□□□ -0.73
VPS28-204ENST00000526054 GRIK2Q13002 908 aa10.46□□□□□ -0.73
VPS28-204ENST00000526054 SLC14A1Q13336 389 aa10.46□□□□□ -0.73
VPS28-204ENST00000526054 EIF4EBP2Q13542 120 aaPredicted RBP10.46□□□□□ -0.73
VPS28-204ENST00000526054 BRMS1LQ5PSV4 323 aa10.46□□□□□ -0.73
VPS28-204ENST00000526054 ADGRF1Q5T601 910 aa10.46□□□□□ -0.73
VPS28-204ENST00000526054 OTUD1Q5VV17 481 aaPredicted RBP10.46□□□□□ -0.73
VPS28-204ENST00000526054 PLEKHA7Q6IQ23 1121 aa10.46□□□□□ -0.73
VPS28-204ENST00000526054 TRNP1Q6NT89 227 aa10.46□□□□□ -0.73
VPS28-204ENST00000526054 SERPINA13PQ6UXR4 307 aa10.46□□□□□ -0.73
VPS28-204ENST00000526054 METTL3Q86U44 580 aaKnown RBP10.46□□□□□ -0.73
VPS28-204ENST00000526054 TMPRSS6Q8IU80 811 aa10.46□□□□□ -0.73
VPS28-204ENST00000526054 SORCS1Q8WY21 1168 aa10.46□□□□□ -0.73
VPS28-204ENST00000526054 NT5C3BQ969T7 300 aa10.46□□□□□ -0.73
VPS28-204ENST00000526054 SIPA1Q96FS4 1042 aa10.46□□□□□ -0.73
VPS28-204ENST00000526054 PANX2Q96RD6 677 aa10.46□□□□□ -0.73
VPS28-204ENST00000526054 TBCBQ99426 244 aa10.46□□□□□ -0.73
VPS28-204ENST00000526054 CHP1Q99653 195 aa10.46□□□□□ -0.73
VPS28-204ENST00000526054 GPR174Q9BXC1 333 aa10.46□□□□□ -0.73
VPS28-204ENST00000526054 SLC2A11Q9BYW1 496 aa10.46□□□□□ -0.73
VPS28-204ENST00000526054 MIR1-1HGQ9H1L0 117 aa10.46□□□□□ -0.73
VPS28-204ENST00000526054 NHEJ1Q9H9Q4 299 aaPredicted RBP10.46□□□□□ -0.73
VPS28-204ENST00000526054 PIGVQ9NUD9 493 aa10.46□□□□□ -0.73
VPS28-204ENST00000526054 ELOVL2Q9NXB9 296 aa10.46□□□□□ -0.73
VPS28-204ENST00000526054 WSB2Q9NYS7 404 aaPredicted RBP10.46□□□□□ -0.73
VPS28-204ENST00000526054 RALYQ9UKM9 306 aaKnown RBP10.46□□□□□ -0.73
VPS28-204ENST00000526054 MSRB2Q9Y3D2 182 aa10.46□□□□□ -0.73
VPS28-204ENST00000526054 FAM208BQ5VWN6 2430 aa10.45□□□□□ -0.74
VPS28-204ENST00000526054 A0A1B0GTW7 788 aa10.45□□□□□ -0.74
VPS28-204ENST00000526054 KCNU1A8MYU2 1149 aa10.45□□□□□ -0.74
VPS28-204ENST00000526054 GJB3O75712 270 aa10.45□□□□□ -0.74
VPS28-204ENST00000526054 H2AFZP0C0S5 128 aa10.45□□□□□ -0.74
VPS28-204ENST00000526054 TFE3P19532 575 aaPredicted RBP10.45□□□□□ -0.74
VPS28-204ENST00000526054 HOXD9P28356 352 aaPredicted RBP10.45□□□□□ -0.74
VPS28-204ENST00000526054 OXTRP30559 389 aa10.45□□□□□ -0.74
VPS28-204ENST00000526054 RFC1P35251 1148 aaPredicted RBP10.45□□□□□ -0.74
VPS28-204ENST00000526054 CXCR3P49682 368 aa10.45□□□□□ -0.74
VPS28-204ENST00000526054 ZNF143P52747 638 aaPredicted RBP10.45□□□□□ -0.74
VPS28-204ENST00000526054 COPAP53621 1224 aa10.45□□□□□ -0.74
VPS28-204ENST00000526054 ATP11AP98196 1134 aa10.45□□□□□ -0.74
VPS28-204ENST00000526054 MAMLD1Q13495 774 aa10.45□□□□□ -0.74
VPS28-204ENST00000526054 CDO1Q16878 200 aa10.45□□□□□ -0.74
VPS28-204ENST00000526054 ZNF423Q2M1K9 1284 aa10.45□□□□□ -0.74
VPS28-204ENST00000526054 ASTE1Q2TB18 679 aaPredicted RBP10.45□□□□□ -0.74
VPS28-204ENST00000526054 CCDC14Q49A88 953 aa10.45□□□□□ -0.74
VPS28-204ENST00000526054 MPPE1Q53F39 396 aa10.45□□□□□ -0.74
VPS28-204ENST00000526054 PPP1R15BQ5SWA1 713 aa10.45□□□□□ -0.74
VPS28-204ENST00000526054 DCAF12L1Q5VU92 463 aa10.45□□□□□ -0.74
VPS28-204ENST00000526054 H2AFVQ71UI9 128 aa10.45□□□□□ -0.74
VPS28-204ENST00000526054 STRADAQ7RTN6 431 aa10.45□□□□□ -0.74
VPS28-204ENST00000526054 CHSY1Q86X52 802 aa10.45□□□□□ -0.74
VPS28-204ENST00000526054 DNAAF5Q86Y56 855 aa10.45□□□□□ -0.74
VPS28-204ENST00000526054 NAXDQ8IW45 347 aa10.45□□□□□ -0.74
VPS28-204ENST00000526054 SPC24Q8NBT2 197 aa10.45□□□□□ -0.74
VPS28-204ENST00000526054 HJURPQ8NCD3 748 aaPredicted RBP10.45□□□□□ -0.74
VPS28-204ENST00000526054 CADM4Q8NFZ8 388 aa10.45□□□□□ -0.74
VPS28-204ENST00000526054 CTNNBL1Q8WYA6 563 aaPredicted RBP10.45□□□□□ -0.74
VPS28-204ENST00000526054 CAMK1GQ96NX5 476 aa10.45□□□□□ -0.74
VPS28-204ENST00000526054 ZDHHC5Q9C0B5 715 aa10.45□□□□□ -0.74
VPS28-204ENST00000526054 WDCPQ9H6R7 721 aa10.45□□□□□ -0.74
VPS28-204ENST00000526054 ITM2CQ9NQX7 267 aa10.45□□□□□ -0.74
VPS28-204ENST00000526054 MYO1AQ9UBC5 1043 aa10.45□□□□□ -0.74
VPS28-204ENST00000526054 CLEC4EQ9ULY5 219 aa10.45□□□□□ -0.74
VPS28-204ENST00000526054 NENFQ9UMX5 172 aa10.45□□□□□ -0.74
VPS28-204ENST00000526054 PCDHB9Q9Y5E1 797 aa10.45□□□□□ -0.74
VPS28-204ENST00000526054 F5H5T6 163 aa10.44□□□□□ -0.74
VPS28-204ENST00000526054 CCP110O43303 1012 aa10.44□□□□□ -0.74
VPS28-204ENST00000526054 SH3BP5O60239 455 aa10.44□□□□□ -0.74
VPS28-204ENST00000526054 TSPAN3O60637 253 aa10.44□□□□□ -0.74
VPS28-204ENST00000526054 ENDOD1O94919 500 aa10.44□□□□□ -0.74
VPS28-204ENST00000526054 CER1O95813 267 aa10.44□□□□□ -0.74
VPS28-204ENST00000526054 IGLV3-19P01714 112 aa10.44□□□□□ -0.74
VPS28-204ENST00000526054 HLA-EP13747 358 aa10.44□□□□□ -0.74
VPS28-204ENST00000526054 TACR2P21452 398 aa10.44□□□□□ -0.74
VPS28-204ENST00000526054 PSMA2P25787 234 aa10.44□□□□□ -0.74
VPS28-204ENST00000526054 CYLC1P35663 651 aaPredicted RBP10.44□□□□□ -0.74
VPS28-204ENST00000526054 GALCP54803 685 aa10.44□□□□□ -0.74
VPS28-204ENST00000526054 RPL7AP62424 266 aaKnown RBP10.44□□□□□ -0.74
VPS28-204ENST00000526054 TRIP6Q15654 476 aaKnown RBP10.44□□□□□ -0.74
VPS28-204ENST00000526054 C15orf59Q2T9L4 293 aaPredicted RBP10.44□□□□□ -0.74
VPS28-204ENST00000526054 ARL13BQ3SXY8 428 aa10.44□□□□□ -0.74
VPS28-204ENST00000526054 FNDC3BQ53EP0 1204 aaKnown RBP10.44□□□□□ -0.74
VPS28-204ENST00000526054 FAM133BQ5BKY9 247 aaKnown RBP10.44□□□□□ -0.74
VPS28-204ENST00000526054 ACBD5Q5T8D3 534 aaPredicted RBP10.44□□□□□ -0.74
VPS28-204ENST00000526054 RAP1GAP2Q684P5 730 aa10.44□□□□□ -0.74
VPS28-204ENST00000526054 TMEM215Q68D42 235 aa10.44□□□□□ -0.74
VPS28-204ENST00000526054 NADSYN1Q6IA69 706 aa10.44□□□□□ -0.74
VPS28-204ENST00000526054 BNIPLQ7Z465 357 aa10.44□□□□□ -0.74
VPS28-204ENST00000526054 FAM124AQ86V42 546 aa10.44□□□□□ -0.74
VPS28-204ENST00000526054 TMTC1Q8IUR5 882 aa10.44□□□□□ -0.74
VPS28-204ENST00000526054 CCDC117Q8IWD4 279 aaPredicted RBP10.44□□□□□ -0.74
VPS28-204ENST00000526054 CCDC170Q8IYT3 715 aa10.44□□□□□ -0.74
VPS28-204ENST00000526054 CHCHD4Q8N4Q1 142 aa10.44□□□□□ -0.74
VPS28-204ENST00000526054 ZNF557Q8N988 423 aaPredicted RBP10.44□□□□□ -0.74
VPS28-204ENST00000526054 WFIKKN2Q8TEU8 576 aa10.44□□□□□ -0.74
VPS28-204ENST00000526054 FNIP1Q8TF40 1166 aa10.44□□□□□ -0.74
VPS28-204ENST00000526054 FAM172AQ8WUF8 416 aa10.44□□□□□ -0.74
VPS28-204ENST00000526054 DNASE2BQ8WZ79 361 aa10.44□□□□□ -0.74
VPS28-204ENST00000526054 SNX19Q92543 992 aa10.44□□□□□ -0.74
VPS28-204ENST00000526054 TMA16Q96EY4 203 aaKnown RBP10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms