RNA–Protein interactions for RNA: ENST00000522240.1

CPNE3-205, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 446 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-205ENST00000522240 USP15Q9Y4E8 981 aaPredicted RBP13.39□□□□□ -0.27
CPNE3-205ENST00000522240 NYNRINQ9P2P1 1898 aaKnown RBP13.38□□□□□ -0.27
CPNE3-205ENST00000522240 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.38□□□□□ -0.27
CPNE3-205ENST00000522240 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.38□□□□□ -0.27
CPNE3-205ENST00000522240 ILVBLA1L0T0 632 aa13.38□□□□□ -0.27
CPNE3-205ENST00000522240 HEPACAM2A8MVW5 462 aa13.38□□□□□ -0.27
CPNE3-205ENST00000522240 BHMG1C9JSJ3 638 aaPredicted RBP13.38□□□□□ -0.27
CPNE3-205ENST00000522240 TRDMT1O14717 391 aaKnown RBP13.38□□□□□ -0.27
CPNE3-205ENST00000522240 SCAMP3O14828 347 aaKnown RBP13.38□□□□□ -0.27
CPNE3-205ENST00000522240 TSPAN3O60637 253 aa13.38□□□□□ -0.27
CPNE3-205ENST00000522240 HEXIM1O94992 359 aaKnown RBP13.38□□□□□ -0.27
CPNE3-205ENST00000522240 LUC7L3O95232 432 aaKnown RBP13.38□□□□□ -0.27
CPNE3-205ENST00000522240 MAP3K6O95382 1288 aa13.38□□□□□ -0.27
CPNE3-205ENST00000522240 PENKP01210 267 aaPredicted RBP13.38□□□□□ -0.27
CPNE3-205ENST00000522240 VAV1P15498 845 aa13.38□□□□□ -0.27
CPNE3-205ENST00000522240 HOXD9P28356 352 aaPredicted RBP13.38□□□□□ -0.27
CPNE3-205ENST00000522240 GBP2P32456 591 aaPredicted RBP13.38□□□□□ -0.27
CPNE3-205ENST00000522240 IFNAR2P48551 515 aa13.38□□□□□ -0.27
CPNE3-205ENST00000522240 OXCT1P55809 520 aa13.38□□□□□ -0.27
CPNE3-205ENST00000522240 ZNF177Q13360 481 aaPredicted RBP13.38□□□□□ -0.27
CPNE3-205ENST00000522240 PPP1R7Q15435 360 aa13.38□□□□□ -0.27
CPNE3-205ENST00000522240 FYB2Q5VWT5 728 aa13.38□□□□□ -0.27
CPNE3-205ENST00000522240 HEATR6Q6AI08 1181 aaKnown RBP13.38□□□□□ -0.27
CPNE3-205ENST00000522240 TIGD7Q6NT04 549 aaPredicted RBP13.38□□□□□ -0.27
CPNE3-205ENST00000522240 MTSS1LQ765P7 747 aa13.38□□□□□ -0.27
CPNE3-205ENST00000522240 OTOP3Q7RTS5 596 aa13.38□□□□□ -0.27
CPNE3-205ENST00000522240 CFAP52Q8N1V2 620 aa13.38□□□□□ -0.27
CPNE3-205ENST00000522240 GPR161Q8N6U8 529 aaKnown RBP13.38□□□□□ -0.27
CPNE3-205ENST00000522240 CCDC89Q8N998 374 aa13.38□□□□□ -0.27
CPNE3-205ENST00000522240 TTC16Q8NEE8 873 aa13.38□□□□□ -0.27
CPNE3-205ENST00000522240 DEPDC1BQ8WUY9 529 aa13.38□□□□□ -0.27
CPNE3-205ENST00000522240 RSAD2Q8WXG1 361 aa13.38□□□□□ -0.27
CPNE3-205ENST00000522240 RSPRY1Q96DX4 576 aa13.38□□□□□ -0.27
CPNE3-205ENST00000522240 CELF6Q96J87 481 aaKnown RBP13.38□□□□□ -0.27
CPNE3-205ENST00000522240 TMEM121Q9BTD3 319 aa13.38□□□□□ -0.27
CPNE3-205ENST00000522240 SLC39A8Q9C0K1 460 aa13.38□□□□□ -0.27
CPNE3-205ENST00000522240 ZFP14Q9HCL3 533 aa13.38□□□□□ -0.27
CPNE3-205ENST00000522240 SPHK2Q9NRA0 654 aa13.38□□□□□ -0.27
CPNE3-205ENST00000522240 EPS15L1Q9UBC2 864 aa13.38□□□□□ -0.27
CPNE3-205ENST00000522240 UTP11Q9Y3A2 253 aaKnown RBP13.38□□□□□ -0.27
CPNE3-205ENST00000522240 PIEZO1Q92508 2521 aa13.38□□□□□ -0.27
CPNE3-205ENST00000522240 COL4A3Q01955 1670 aa13.37□□□□□ -0.27
CPNE3-205ENST00000522240 REV3LO60673 3130 aa13.37□□□□□ -0.27
CPNE3-205ENST00000522240 RASA4BC9J798 803 aa13.37□□□□□ -0.27
CPNE3-205ENST00000522240 SGK1O00141 431 aa13.37□□□□□ -0.27
CPNE3-205ENST00000522240 DFFAO00273 331 aa13.37□□□□□ -0.27
CPNE3-205ENST00000522240 RASA4O43374 803 aa13.37□□□□□ -0.27
CPNE3-205ENST00000522240 STK10O94804 968 aaKnown RBP13.37□□□□□ -0.27
CPNE3-205ENST00000522240 NFATC1O95644 943 aa13.37□□□□□ -0.27
CPNE3-205ENST00000522240 TUBBP07437 444 aa13.37□□□□□ -0.27
CPNE3-205ENST00000522240 RHOCP08134 193 aa13.37□□□□□ -0.27
CPNE3-205ENST00000522240 RHOXF2BP0C7M4 288 aa13.37□□□□□ -0.27
CPNE3-205ENST00000522240 LAMP2P13473 410 aa13.37□□□□□ -0.27
CPNE3-205ENST00000522240 CCNCP24863 283 aa13.37□□□□□ -0.27
CPNE3-205ENST00000522240 RBL1P28749 1068 aa13.37□□□□□ -0.27
CPNE3-205ENST00000522240 VIPR2P41587 438 aa13.37□□□□□ -0.27
CPNE3-205ENST00000522240 GNA12Q03113 381 aa13.37□□□□□ -0.27
CPNE3-205ENST00000522240 FCHO2Q0JRZ9 810 aa13.37□□□□□ -0.27
CPNE3-205ENST00000522240 CDH18Q13634 790 aa13.37□□□□□ -0.27
CPNE3-205ENST00000522240 POLD3Q15054 466 aaPredicted RBP13.37□□□□□ -0.27
CPNE3-205ENST00000522240 PDGFRLQ15198 375 aa13.37□□□□□ -0.27
CPNE3-205ENST00000522240 ERCC6LQ2NKX8 1250 aa13.37□□□□□ -0.27
CPNE3-205ENST00000522240 P3H1Q32P28 736 aa13.37□□□□□ -0.27
CPNE3-205ENST00000522240 CXorf57Q6NSI4 855 aaKnown RBP13.37□□□□□ -0.27
CPNE3-205ENST00000522240 C4orf22Q6V702 233 aa13.37□□□□□ -0.27
CPNE3-205ENST00000522240 GSTA5Q7RTV2 222 aa13.37□□□□□ -0.27
CPNE3-205ENST00000522240 CCDC117Q8IWD4 279 aaPredicted RBP13.37□□□□□ -0.27
CPNE3-205ENST00000522240 TP53INP2Q8IXH6 220 aa13.37□□□□□ -0.27
CPNE3-205ENST00000522240 CCDC13Q8IYE1 715 aa13.37□□□□□ -0.27
CPNE3-205ENST00000522240 DDI1Q8WTU0 396 aa13.37□□□□□ -0.27
CPNE3-205ENST00000522240 HTR3CQ8WXA8 447 aa13.37□□□□□ -0.27
CPNE3-205ENST00000522240 SEC14L1Q92503 715 aa13.37□□□□□ -0.27
CPNE3-205ENST00000522240 IRF7Q92985 503 aa13.37□□□□□ -0.27
CPNE3-205ENST00000522240 ELSPBP1Q96BH3 223 aa13.37□□□□□ -0.27
CPNE3-205ENST00000522240 RHOXF2Q9BQY4 288 aa13.37□□□□□ -0.27
CPNE3-205ENST00000522240 ERP44Q9BS26 406 aa13.37□□□□□ -0.27
CPNE3-205ENST00000522240 TRIM51Q9BSJ1 452 aa13.37□□□□□ -0.27
CPNE3-205ENST00000522240 ANKZF1Q9H8Y5 726 aa13.37□□□□□ -0.27
CPNE3-205ENST00000522240 USP29Q9HBJ7 922 aa13.37□□□□□ -0.27
CPNE3-205ENST00000522240 THG1LQ9NWX6 298 aaKnown RBP13.37□□□□□ -0.27
CPNE3-205ENST00000522240 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.37□□□□□ -0.27
CPNE3-205ENST00000522240 WNT6Q9Y6F9 365 aa13.37□□□□□ -0.27
CPNE3-205ENST00000522240 V9GYY5 206 aaPredicted RBP13.37□□□□□ -0.27
CPNE3-205ENST00000522240 C5orf60A6NFR6 353 aa13.36□□□□□ -0.27
CPNE3-205ENST00000522240 H0Y626 953 aa13.36□□□□□ -0.27
CPNE3-205ENST00000522240 NDC80O14777 642 aa13.36□□□□□ -0.27
CPNE3-205ENST00000522240 KCNN4O15554 427 aa13.36□□□□□ -0.27
CPNE3-205ENST00000522240 HOXC11O43248 304 aaPredicted RBP13.36□□□□□ -0.27
CPNE3-205ENST00000522240 MBTPS2O43462 519 aa13.36□□□□□ -0.27
CPNE3-205ENST00000522240 MAFKO60675 156 aa13.36□□□□□ -0.27
CPNE3-205ENST00000522240 ECI2O75521 394 aa13.36□□□□□ -0.27
CPNE3-205ENST00000522240 KRT14P02533 472 aa13.36□□□□□ -0.27
CPNE3-205ENST00000522240 MCM3P25205 808 aa13.36□□□□□ -0.27
CPNE3-205ENST00000522240 TNFRSF8P28908 595 aa13.36□□□□□ -0.27
CPNE3-205ENST00000522240 PAPOLAP51003 745 aaKnown RBP13.36□□□□□ -0.27
CPNE3-205ENST00000522240 GDF10P55107 478 aa13.36□□□□□ -0.27
CPNE3-205ENST00000522240 SERINC3Q13530 473 aa13.36□□□□□ -0.27
CPNE3-205ENST00000522240 SLC12A1Q13621 1099 aa13.36□□□□□ -0.27
CPNE3-205ENST00000522240 ELF2Q15723 593 aa13.36□□□□□ -0.27
CPNE3-205ENST00000522240 CCDC85BQ15834 202 aaPredicted RBP13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms