RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 PPIGQ13427 754 aaKnown RBP eCLIP8.56□□□□□ -1.044e-10■■□□□ 12.4
RNF4-220ENST00000513578 HNRNPDQ14103 355 aaKnown RBP8.56□□□□□ -1.04
RNF4-220ENST00000513578 VEPH1Q14D04 833 aa8.56□□□□□ -1.04
RNF4-220ENST00000513578 PARP15Q460N3 678 aa8.56□□□□□ -1.04
RNF4-220ENST00000513578 HP1BP3Q5SSJ5 553 aaPredicted RBP8.56□□□□□ -1.04
RNF4-220ENST00000513578 SPOUT1Q5T280 376 aaKnown RBP8.56□□□□□ -1.04
RNF4-220ENST00000513578 HECTD3Q5T447 861 aa8.56□□□□□ -1.04
RNF4-220ENST00000513578 LGSNQ5TDP6 509 aa8.56□□□□□ -1.04
RNF4-220ENST00000513578 NAPEPLDQ6IQ20 393 aa8.56□□□□□ -1.04
RNF4-220ENST00000513578 UNC5AQ6ZN44 842 aa8.56□□□□□ -1.04
RNF4-220ENST00000513578 RTL10Q7L3V2 364 aa8.56□□□□□ -1.04
RNF4-220ENST00000513578 LINC00523Q86TU6 105 aa8.56□□□□□ -1.04
RNF4-220ENST00000513578 SLC26A11Q86WA9 606 aa8.56□□□□□ -1.04
RNF4-220ENST00000513578 ATPAF2Q8N5M1 289 aa8.56□□□□□ -1.04
RNF4-220ENST00000513578 TEX26Q8N6G2 289 aa8.56□□□□□ -1.04
RNF4-220ENST00000513578 CNTD1Q8N815 330 aa8.56□□□□□ -1.04
RNF4-220ENST00000513578 GPR152Q8TDT2 470 aa8.56□□□□□ -1.04
RNF4-220ENST00000513578 GIPC2Q8TF65 315 aa8.56□□□□□ -1.04
RNF4-220ENST00000513578 LRRN4Q8WUT4 740 aa8.56□□□□□ -1.04
RNF4-220ENST00000513578 ARNTL2Q8WYA1 636 aa8.56□□□□□ -1.04
RNF4-220ENST00000513578 CLP1Q92989 425 aaKnown RBP8.56□□□□□ -1.04
RNF4-220ENST00000513578 STAMBPL1Q96FJ0 436 aa8.56□□□□□ -1.04
RNF4-220ENST00000513578 PAFAH2Q99487 392 aa8.56□□□□□ -1.04
RNF4-220ENST00000513578 MLPHQ9BV36 600 aaPredicted RBP8.56□□□□□ -1.04
RNF4-220ENST00000513578 ZBP1Q9H171 429 aa8.56□□□□□ -1.04
RNF4-220ENST00000513578 NOL6Q9H6R4 1146 aaKnown RBP8.56□□□□□ -1.04
RNF4-220ENST00000513578 LRRC40Q9H9A6 602 aa8.56□□□□□ -1.04
RNF4-220ENST00000513578 MRPL17Q9NRX2 175 aaKnown RBP8.56□□□□□ -1.04
RNF4-220ENST00000513578 INTS9Q9NV88 658 aaKnown RBP8.56□□□□□ -1.04
RNF4-220ENST00000513578 TRPM5Q9NZQ8 1165 aa8.56□□□□□ -1.04
RNF4-220ENST00000513578 CTNNAL1Q9UBT7 734 aa8.56□□□□□ -1.04
RNF4-220ENST00000513578 RSPH14Q9UHP6 348 aa8.56□□□□□ -1.04
RNF4-220ENST00000513578 GGA2Q9UJY4 613 aa8.56□□□□□ -1.04
RNF4-220ENST00000513578 STOML2Q9UJZ1 356 aa8.56□□□□□ -1.04
RNF4-220ENST00000513578 YIPF1Q9Y548 306 aa8.56□□□□□ -1.04
RNF4-220ENST00000513578 PCDHB12Q9Y5F1 795 aa8.56□□□□□ -1.04
RNF4-220ENST00000513578 HELZP42694 1942 aaKnown RBP8.56□□□□□ -1.04
RNF4-220ENST00000513578 TMEM120BA0PK00 339 aa8.55□□□□□ -1.04
RNF4-220ENST00000513578 TYROBPO43914 113 aa8.55□□□□□ -1.04
RNF4-220ENST00000513578 ACSL4O60488 711 aa8.55□□□□□ -1.04
RNF4-220ENST00000513578 GJB5O95377 273 aa8.55□□□□□ -1.04
RNF4-220ENST00000513578 TBX18O95935 607 aa8.55□□□□□ -1.04
RNF4-220ENST00000513578 MOCS2O96007 188 aaPredicted RBP8.55□□□□□ -1.04
RNF4-220ENST00000513578 PEX11BO96011 259 aa8.55□□□□□ -1.04
RNF4-220ENST00000513578 OAS1P00973 400 aaKnown RBP8.55□□□□□ -1.04
RNF4-220ENST00000513578 JCHAINP01591 159 aa8.55□□□□□ -1.04
RNF4-220ENST00000513578 FGBP02675 491 aa8.55□□□□□ -1.04
RNF4-220ENST00000513578 PFKLP17858 780 aa8.55□□□□□ -1.04
RNF4-220ENST00000513578 RPL17P18621 184 aaKnown RBP8.55□□□□□ -1.04
RNF4-220ENST00000513578 NFKB1P19838 968 aa8.55□□□□□ -1.04
RNF4-220ENST00000513578 TACR2P21452 398 aa8.55□□□□□ -1.04
RNF4-220ENST00000513578 CNTFP26441 200 aa8.55□□□□□ -1.04
RNF4-220ENST00000513578 GRIA1P42261 906 aa8.55□□□□□ -1.04
RNF4-220ENST00000513578 SERPINB9P50453 376 aa8.55□□□□□ -1.04
RNF4-220ENST00000513578 PAPOLAP51003 745 aaKnown RBP8.55□□□□□ -1.04
RNF4-220ENST00000513578 GEMP55040 296 aa8.55□□□□□ -1.04
RNF4-220ENST00000513578 IL10RBQ08334 325 aa8.55□□□□□ -1.04
RNF4-220ENST00000513578 DNAJC3Q13217 504 aa8.55□□□□□ -1.04
RNF4-220ENST00000513578 TMED2Q15363 201 aa8.55□□□□□ -1.04
RNF4-220ENST00000513578 ZSCAN26Q16670 478 aa8.55□□□□□ -1.04
RNF4-220ENST00000513578 KBTBD12Q3ZCT8 623 aa8.55□□□□□ -1.04
RNF4-220ENST00000513578 SPANXN3Q5MJ09 141 aa8.55□□□□□ -1.04
RNF4-220ENST00000513578 FBXL22Q6P050 247 aa8.55□□□□□ -1.04
RNF4-220ENST00000513578 MARK2Q7KZI7 788 aaKnown RBP8.55□□□□□ -1.04
RNF4-220ENST00000513578 C16orf59Q7L2K0 433 aa8.55□□□□□ -1.04
RNF4-220ENST00000513578 ITIH5Q86UX2 942 aa8.55□□□□□ -1.04
RNF4-220ENST00000513578 LRRC6Q86X45 466 aa8.55□□□□□ -1.04
RNF4-220ENST00000513578 SPATS2Q86XZ4 545 aaKnown RBP8.55□□□□□ -1.04
RNF4-220ENST00000513578 CCDC33Q8N5R6 958 aa8.55□□□□□ -1.04
RNF4-220ENST00000513578 MDM1Q8TC05 714 aa8.55□□□□□ -1.04
RNF4-220ENST00000513578 PHOSPHO2Q8TCD6 241 aa8.55□□□□□ -1.04
RNF4-220ENST00000513578 BCAS4Q8TDM0 211 aa8.55□□□□□ -1.04
RNF4-220ENST00000513578 DENND1AQ8TEH3 1009 aa8.55□□□□□ -1.04
RNF4-220ENST00000513578 PSMG2Q969U7 264 aa8.55□□□□□ -1.04
RNF4-220ENST00000513578 MTBPQ96DY7 904 aa8.55□□□□□ -1.04
RNF4-220ENST00000513578 CELF6Q96J87 481 aaKnown RBP8.55□□□□□ -1.04
RNF4-220ENST00000513578 ZNF599Q96NL3 588 aa8.55□□□□□ -1.04
RNF4-220ENST00000513578 ZNF317Q96PQ6 595 aaPredicted RBP8.55□□□□□ -1.04
RNF4-220ENST00000513578 SMC6Q96SB8 1091 aa8.55□□□□□ -1.04
RNF4-220ENST00000513578 DDX50Q9BQ39 737 aaKnown RBP8.55□□□□□ -1.04
RNF4-220ENST00000513578 SELENOSQ9BQE4 189 aa8.55□□□□□ -1.04
RNF4-220ENST00000513578 TRABDQ9H4I3 376 aa8.55□□□□□ -1.04
RNF4-220ENST00000513578 CCSER2Q9H7U1 834 aa8.55□□□□□ -1.04
RNF4-220ENST00000513578 CYP4F11Q9HBI6 524 aa8.55□□□□□ -1.04
RNF4-220ENST00000513578 GLOD4Q9HC38 313 aa8.55□□□□□ -1.04
RNF4-220ENST00000513578 MKS1Q9NXB0 559 aa8.55□□□□□ -1.04
RNF4-220ENST00000513578 SEPT10Q9P0V9 454 aa8.55□□□□□ -1.04
RNF4-220ENST00000513578 IPO11Q9UI26 975 aaKnown RBP8.55□□□□□ -1.04
RNF4-220ENST00000513578 VANGL2Q9ULK5 521 aa8.55□□□□□ -1.04
RNF4-220ENST00000513578 LZTS1Q9Y250 596 aa8.55□□□□□ -1.04
RNF4-220ENST00000513578 NR2E3Q9Y5X4 410 aa8.55□□□□□ -1.04
RNF4-220ENST00000513578 IRAK3Q9Y616 596 aa8.55□□□□□ -1.04
RNF4-220ENST00000513578 FAM237BA0A1B0GVD1 139 aa8.54□□□□□ -1.04
RNF4-220ENST00000513578 FAM47DPA6NHR8 397 aa8.54□□□□□ -1.04
RNF4-220ENST00000513578 F5H5T6 163 aa8.54□□□□□ -1.04
RNF4-220ENST00000513578 DFFAO00273 331 aa8.54□□□□□ -1.04
RNF4-220ENST00000513578 KRT37O76014 449 aa8.54□□□□□ -1.04
RNF4-220ENST00000513578 FGF18O76093 207 aa8.54□□□□□ -1.04
RNF4-220ENST00000513578 USP1O94782 785 aa8.54□□□□□ -1.04
RNF4-220ENST00000513578 OLFM2O95897 454 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms