RNA–Protein interactions for RNA: ENST00000512229.6

PCDHA4-202, Transcript of protocadherin alpha 4, humanhuman

TSL 1 (best) BASIC

Gene PCDHA4, Length 4,163 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA4-202ENST00000512229 SRRDQ9UH36 339 aa13.35□□□□□ -0.27
PCDHA4-202ENST00000512229 MSI1O43347 362 aaKnown RBP13.35□□□□□ -0.27
PCDHA4-202ENST00000512229 E2F6O75461 281 aa13.35□□□□□ -0.27
PCDHA4-202ENST00000512229 DGKIO75912 1065 aa13.35□□□□□ -0.27
PCDHA4-202ENST00000512229 TRIM16O95361 564 aa13.35□□□□□ -0.27
PCDHA4-202ENST00000512229 CKBP12277 381 aa13.35□□□□□ -0.27
PCDHA4-202ENST00000512229 CD86P42081 329 aa13.35□□□□□ -0.27
PCDHA4-202ENST00000512229 ICE2Q659A1 982 aa13.35□□□□□ -0.27
PCDHA4-202ENST00000512229 C16orf46Q6P387 395 aa13.35□□□□□ -0.27
PCDHA4-202ENST00000512229 PRCCQ92733 491 aaPredicted RBP13.35□□□□□ -0.27
PCDHA4-202ENST00000512229 SEMA3CQ99985 751 aa13.35□□□□□ -0.27
PCDHA4-202ENST00000512229 BCO2Q9BYV7 579 aa13.35□□□□□ -0.27
PCDHA4-202ENST00000512229 WWOXQ9NZC7 414 aa13.35□□□□□ -0.27
PCDHA4-202ENST00000512229 BCLAF3A2AJT9 711 aaKnown RBP13.34□□□□□ -0.27
PCDHA4-202ENST00000512229 SRRM3A6NNA2 597 aaPredicted RBP13.34□□□□□ -0.27
PCDHA4-202ENST00000512229 SYCE1LA8MT33 242 aa13.34□□□□□ -0.27
PCDHA4-202ENST00000512229 SMAD3P84022 425 aaKnown RBP13.34□□□□□ -0.27
PCDHA4-202ENST00000512229 TEX44Q53QW1 395 aa13.34□□□□□ -0.27
PCDHA4-202ENST00000512229 SGO1Q5FBB7 561 aa13.34□□□□□ -0.27
PCDHA4-202ENST00000512229 DENND1CQ8IV53 801 aa13.34□□□□□ -0.27
PCDHA4-202ENST00000512229 NIPA2Q8N8Q9 360 aa13.34□□□□□ -0.27
PCDHA4-202ENST00000512229 IRGQQ8WZA9 623 aa13.34□□□□□ -0.27
PCDHA4-202ENST00000512229 PHF21BQ96EK2 531 aa13.34□□□□□ -0.27
PCDHA4-202ENST00000512229 ARHGEF4Q9NR80 690 aa13.34□□□□□ -0.27
PCDHA4-202ENST00000512229 UTP6Q9NYH9 597 aaKnown RBP13.34□□□□□ -0.27
PCDHA4-202ENST00000512229 TMEM247A6NEH6 219 aa13.34□□□□□ -0.27
PCDHA4-202ENST00000512229 PPEF2O14830 753 aa13.34□□□□□ -0.27
PCDHA4-202ENST00000512229 PHGDHO43175 533 aaKnown RBP13.34□□□□□ -0.27
PCDHA4-202ENST00000512229 ALADP13716 330 aa13.34□□□□□ -0.27
PCDHA4-202ENST00000512229 CCND1P24385 295 aa13.34□□□□□ -0.27
PCDHA4-202ENST00000512229 ESRRGP62508 458 aa13.34□□□□□ -0.27
PCDHA4-202ENST00000512229 CCDC15Q0P6D6 951 aa13.34□□□□□ -0.27
PCDHA4-202ENST00000512229 MAMDC4Q6UXC1 1216 aa13.34□□□□□ -0.27
PCDHA4-202ENST00000512229 CCDC149Q6ZUS6 474 aa13.34□□□□□ -0.27
PCDHA4-202ENST00000512229 GLT6D1Q7Z4J2 308 aa13.34□□□□□ -0.27
PCDHA4-202ENST00000512229 TMEM110Q86TL2 294 aa13.34□□□□□ -0.27
PCDHA4-202ENST00000512229 TRABD2AQ86V40 505 aa13.34□□□□□ -0.27
PCDHA4-202ENST00000512229 CMASQ8NFW8 434 aaPredicted RBP13.34□□□□□ -0.27
PCDHA4-202ENST00000512229 DPF3Q92784 378 aa13.34□□□□□ -0.27
PCDHA4-202ENST00000512229 SLC9A7Q96T83 725 aa13.34□□□□□ -0.27
PCDHA4-202ENST00000512229 TAS2R13Q9NYV9 303 aa13.34□□□□□ -0.27
PCDHA4-202ENST00000512229 MYH10P35580 1976 aa13.34□□□□□ -0.27
PCDHA4-202ENST00000512229 A0A1W2PQH9 124 aa13.34□□□□□ -0.27
PCDHA4-202ENST00000512229 YJEFN3A6XGL0 299 aa13.34□□□□□ -0.27
PCDHA4-202ENST00000512229 E7ENQ6 273 aa13.34□□□□□ -0.27
PCDHA4-202ENST00000512229 SNX3O60493 162 aa13.34□□□□□ -0.27
PCDHA4-202ENST00000512229 CLASP2O75122 1294 aaKnown RBP13.34□□□□□ -0.27
PCDHA4-202ENST00000512229 ATXN8OSP0DMR3 200 aa13.34□□□□□ -0.27
PCDHA4-202ENST00000512229 NQO1P15559 274 aaKnown RBP13.34□□□□□ -0.27
PCDHA4-202ENST00000512229 PPM1AP35813 382 aa13.34□□□□□ -0.27
PCDHA4-202ENST00000512229 SLC1A6P48664 564 aa13.34□□□□□ -0.27
PCDHA4-202ENST00000512229 ILF2Q12905 390 aaKnown RBP13.34□□□□□ -0.27
PCDHA4-202ENST00000512229 C1orf220Q5T0J3 134 aa13.34□□□□□ -0.27
PCDHA4-202ENST00000512229 SH3PXD2AQ5TCZ1 1133 aa13.34□□□□□ -0.27
PCDHA4-202ENST00000512229 CYB5D1Q6P9G0 228 aa13.34□□□□□ -0.27
PCDHA4-202ENST00000512229 RAB42Q8N4Z0 105 aa13.34□□□□□ -0.27
PCDHA4-202ENST00000512229 KCTD15Q96SI1 283 aaPredicted RBP13.34□□□□□ -0.27
PCDHA4-202ENST00000512229 CENPKQ9BS16 269 aa13.34□□□□□ -0.27
PCDHA4-202ENST00000512229 STRA6Q9BX79 667 aa13.34□□□□□ -0.27
PCDHA4-202ENST00000512229 PCDHA11Q9Y5I1 949 aa13.34□□□□□ -0.27
PCDHA4-202ENST00000512229 NCF1BA6NI72 391 aaPredicted RBP13.33□□□□□ -0.27
PCDHA4-202ENST00000512229 NCF1CA8MVU1 366 aaPredicted RBP13.33□□□□□ -0.27
PCDHA4-202ENST00000512229 SPTLC1O15269 473 aa13.33□□□□□ -0.27
PCDHA4-202ENST00000512229 PARNO95453 639 aaKnown RBP13.33□□□□□ -0.27
PCDHA4-202ENST00000512229 THRAP10827 490 aa13.33□□□□□ -0.27
PCDHA4-202ENST00000512229 NCF1P14598 390 aaPredicted RBP13.33□□□□□ -0.27
PCDHA4-202ENST00000512229 HOXB8P17481 243 aaPredicted RBP13.33□□□□□ -0.27
PCDHA4-202ENST00000512229 IL10P22301 178 aa13.33□□□□□ -0.27
PCDHA4-202ENST00000512229 PRKAA1Q13131 559 aa13.33□□□□□ -0.27
PCDHA4-202ENST00000512229 ZNF284Q2VY69 593 aa13.33□□□□□ -0.27
PCDHA4-202ENST00000512229 GDF6Q6KF10 455 aaPredicted RBP13.33□□□□□ -0.27
PCDHA4-202ENST00000512229 LAYNQ6UX15 382 aa13.33□□□□□ -0.27
PCDHA4-202ENST00000512229 ZCCHC23Q6ZST2 131 aa13.33□□□□□ -0.27
PCDHA4-202ENST00000512229 SZRD1Q7Z422 152 aa13.33□□□□□ -0.27
PCDHA4-202ENST00000512229 CCDC185Q8N715 623 aa13.33□□□□□ -0.27
PCDHA4-202ENST00000512229 PCDH19Q8TAB3 1148 aa13.33□□□□□ -0.27
PCDHA4-202ENST00000512229 DDX1Q92499 740 aaKnown RBP13.33□□□□□ -0.27
PCDHA4-202ENST00000512229 N4BP2L2Q92802 583 aaPredicted RBP13.33□□□□□ -0.27
PCDHA4-202ENST00000512229 SLC4A5Q9BY07 1137 aa13.33□□□□□ -0.27
PCDHA4-202ENST00000512229 MFSD11O43934 449 aa13.33□□□□□ -0.28
PCDHA4-202ENST00000512229 XYLBO75191 536 aa13.33□□□□□ -0.28
PCDHA4-202ENST00000512229 CALB2P22676 271 aa13.33□□□□□ -0.28
PCDHA4-202ENST00000512229 GCKP35557 465 aa13.33□□□□□ -0.28
PCDHA4-202ENST00000512229 ARHGDIAP52565 204 aa13.33□□□□□ -0.28
PCDHA4-202ENST00000512229 PRMT2P55345 433 aa13.33□□□□□ -0.28
PCDHA4-202ENST00000512229 MAXP61244 160 aa13.33□□□□□ -0.28
PCDHA4-202ENST00000512229 SATB1Q01826 763 aa13.33□□□□□ -0.28
PCDHA4-202ENST00000512229 BCL2L1Q07817 233 aa13.33□□□□□ -0.28
PCDHA4-202ENST00000512229 RARS2Q5T160 578 aaKnown RBP13.33□□□□□ -0.28
PCDHA4-202ENST00000512229 ACBD5Q5T8D3 534 aaPredicted RBP13.33□□□□□ -0.28
PCDHA4-202ENST00000512229 FOXR1Q6PIV2 292 aa13.33□□□□□ -0.28
PCDHA4-202ENST00000512229 SLC22A9Q8IVM8 553 aa13.33□□□□□ -0.28
PCDHA4-202ENST00000512229 MYO1HQ8N1T3 1032 aa13.33□□□□□ -0.28
PCDHA4-202ENST00000512229 RSPH1Q8WYR4 309 aa13.33□□□□□ -0.28
PCDHA4-202ENST00000512229 CCDC138Q96M89 665 aa13.33□□□□□ -0.28
PCDHA4-202ENST00000512229 LPIN3Q9BQK8 851 aa13.33□□□□□ -0.28
PCDHA4-202ENST00000512229 PHACTR1Q9C0D0 580 aa13.33□□□□□ -0.28
PCDHA4-202ENST00000512229 CDHR5Q9HBB8 845 aa13.33□□□□□ -0.28
PCDHA4-202ENST00000512229 A0A0U1RQF3 1178 aa13.33□□□□□ -0.28
PCDHA4-202ENST00000512229 E9PBE3 544 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms