RNA–Protein interactions for RNA: ENST00000498725.5

CCDC171-209, Transcript of coiled-coil domain containing 171, humanhuman

TSL 3

Gene CCDC171, Length 498 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-209ENST00000498725 RAP1GAP2Q684P5 730 aa9.42□□□□□ -0.9
CCDC171-209ENST00000498725 NUGGCQ68CJ6 796 aa9.42□□□□□ -0.9
CCDC171-209ENST00000498725 CCDC81Q6ZN84 652 aa9.42□□□□□ -0.9
CCDC171-209ENST00000498725 CIR1Q86X95 450 aaPredicted RBP9.42□□□□□ -0.9
CCDC171-209ENST00000498725 ZNF557Q8N988 423 aaPredicted RBP9.42□□□□□ -0.9
CCDC171-209ENST00000498725 IFI44Q8TCB0 444 aa9.42□□□□□ -0.9
CCDC171-209ENST00000498725 ATXN7L3BQ96GX2 97 aa9.42□□□□□ -0.9
CCDC171-209ENST00000498725 MIS12Q9H081 205 aa9.42□□□□□ -0.9
CCDC171-209ENST00000498725 SYNDIG1Q9H7V2 258 aa9.42□□□□□ -0.9
CCDC171-209ENST00000498725 TMEM8AQ9HCN3 771 aa9.42□□□□□ -0.9
CCDC171-209ENST00000498725 IL17BQ9UHF5 180 aa9.42□□□□□ -0.9
CCDC171-209ENST00000498725 XPO7Q9UIA9 1087 aaKnown RBP9.42□□□□□ -0.9
CCDC171-209ENST00000498725 NAV2Q8IVL1 2488 aa9.42□□□□□ -0.9
CCDC171-209ENST00000498725 PRAMEF26H0Y7S4 382 aa9.41□□□□□ -0.9
CCDC171-209ENST00000498725 K7ENP7 123 aa9.41□□□□□ -0.9
CCDC171-209ENST00000498725 PLRG1O43660 514 aaKnown RBP9.41□□□□□ -0.9
CCDC171-209ENST00000498725 PIAS2O75928 621 aa9.41□□□□□ -0.9
CCDC171-209ENST00000498725 IGLV3-27P01718 113 aa9.41□□□□□ -0.9
CCDC171-209ENST00000498725 ALPPL2P10696 532 aa9.41□□□□□ -0.9
CCDC171-209ENST00000498725 CKMT1AP12532 417 aa9.41□□□□□ -0.9
CCDC171-209ENST00000498725 PDGFRAP16234 1089 aa9.41□□□□□ -0.9
CCDC171-209ENST00000498725 TGM2P21980 687 aa9.41□□□□□ -0.9
CCDC171-209ENST00000498725 CSRP3P50461 194 aa9.41□□□□□ -0.9
CCDC171-209ENST00000498725 CLDN2P57739 230 aa9.41□□□□□ -0.9
CCDC171-209ENST00000498725 LRMPQ12912 555 aa9.41□□□□□ -0.9
CCDC171-209ENST00000498725 PDAP1Q13442 181 aaKnown RBP9.41□□□□□ -0.9
CCDC171-209ENST00000498725 ELAVL3Q14576 367 aaKnown RBP9.41□□□□□ -0.9
CCDC171-209ENST00000498725 CDKN3Q16667 212 aa9.41□□□□□ -0.9
CCDC171-209ENST00000498725 MS4A13Q5J8X5 152 aa9.41□□□□□ -0.9
CCDC171-209ENST00000498725 TCERG1LQ5VWI1 586 aa9.41□□□□□ -0.9
CCDC171-209ENST00000498725 KRT39Q6A163 491 aa9.41□□□□□ -0.9
CCDC171-209ENST00000498725 OR6B2Q6IFH4 312 aa9.41□□□□□ -0.9
CCDC171-209ENST00000498725 MSANTD2Q6P1R3 559 aa9.41□□□□□ -0.9
CCDC171-209ENST00000498725 INO80CQ6PI98 192 aaPredicted RBP9.41□□□□□ -0.9
CCDC171-209ENST00000498725 INTS8Q75QN2 995 aaKnown RBP9.41□□□□□ -0.9
CCDC171-209ENST00000498725 IQCHQ86VS3 1027 aa9.41□□□□□ -0.9
CCDC171-209ENST00000498725 CHSY1Q86X52 802 aa9.41□□□□□ -0.9
CCDC171-209ENST00000498725 EXD3Q8N9H8 876 aa9.41□□□□□ -0.9
CCDC171-209ENST00000498725 FBXL13Q8NEE6 735 aa9.41□□□□□ -0.9
CCDC171-209ENST00000498725 OR13H1Q8NG92 308 aa9.41□□□□□ -0.9
CCDC171-209ENST00000498725 OR8D1Q8WZ84 308 aa9.41□□□□□ -0.9
CCDC171-209ENST00000498725 ARRDC3Q96B67 414 aa9.41□□□□□ -0.9
CCDC171-209ENST00000498725 PAGE5Q96GU1 130 aa9.41□□□□□ -0.9
CCDC171-209ENST00000498725 FCRL2Q96LA5 508 aaPredicted RBP9.41□□□□□ -0.9
CCDC171-209ENST00000498725 NOX5Q96PH1 765 aa9.41□□□□□ -0.9
CCDC171-209ENST00000498725 DDX50Q9BQ39 737 aaKnown RBP9.41□□□□□ -0.9
CCDC171-209ENST00000498725 DNAJC28Q9NX36 388 aa9.41□□□□□ -0.9
CCDC171-209ENST00000498725 RAB20Q9NX57 234 aa9.41□□□□□ -0.9
CCDC171-209ENST00000498725 PCDHA7Q9UN72 937 aa9.41□□□□□ -0.9
CCDC171-209ENST00000498725 DMTF1Q9Y222 760 aa9.41□□□□□ -0.9
CCDC171-209ENST00000498725 A0A1W2PNU3 283 aaPredicted RBP9.4□□□□□ -0.9
CCDC171-209ENST00000498725 A0A1W2PQU0 124 aa9.4□□□□□ -0.9
CCDC171-209ENST00000498725 C10orf142B7Z368 130 aa9.4□□□□□ -0.9
CCDC171-209ENST00000498725 AGRPO00253 132 aa9.4□□□□□ -0.9
CCDC171-209ENST00000498725 CASC3O15234 703 aaKnown RBP9.4□□□□□ -0.9
CCDC171-209ENST00000498725 DXOO77932 396 aaKnown RBP9.4□□□□□ -0.9
CCDC171-209ENST00000498725 YEATS4O95619 227 aa9.4□□□□□ -0.9
CCDC171-209ENST00000498725 GIMD1P0DJR0 217 aa9.4□□□□□ -0.9
CCDC171-209ENST00000498725 PSMC2P35998 433 aaKnown RBP9.4□□□□□ -0.9
CCDC171-209ENST00000498725 MXI1P50539 228 aa9.4□□□□□ -0.9
CCDC171-209ENST00000498725 DUSP3P51452 185 aaPredicted RBP9.4□□□□□ -0.9
CCDC171-209ENST00000498725 OVGP1Q12889 678 aa9.4□□□□□ -0.9
CCDC171-209ENST00000498725 ADAM9Q13443 819 aa9.4□□□□□ -0.9
CCDC171-209ENST00000498725 ARID5BQ14865 1188 aa9.4□□□□□ -0.9
CCDC171-209ENST00000498725 DRAP1Q14919 205 aaPredicted RBP9.4□□□□□ -0.9
CCDC171-209ENST00000498725 ISXQ2M1V0 245 aa9.4□□□□□ -0.9
CCDC171-209ENST00000498725 COLEC12Q5KU26 742 aa9.4□□□□□ -0.9
CCDC171-209ENST00000498725 AGBL4Q5VU57 503 aa9.4□□□□□ -0.9
CCDC171-209ENST00000498725 RESP18Q5W5W9 173 aa9.4□□□□□ -0.9
CCDC171-209ENST00000498725 PMF1Q6P1K2 205 aa9.4□□□□□ -0.9
CCDC171-209ENST00000498725 Q6ZVU0 165 aa9.4□□□□□ -0.9
CCDC171-209ENST00000498725 PTAR1Q7Z6K3 402 aaPredicted RBP9.4□□□□□ -0.9
CCDC171-209ENST00000498725 TRIM69Q86WT6 500 aa9.4□□□□□ -0.9
CCDC171-209ENST00000498725 TTC39CQ8N584 583 aa9.4□□□□□ -0.9
CCDC171-209ENST00000498725 KDM1BQ8NB78 822 aa9.4□□□□□ -0.9
CCDC171-209ENST00000498725 HS3ST6Q96QI5 342 aa9.4□□□□□ -0.9
CCDC171-209ENST00000498725 SPAG5Q96R06 1193 aa9.4□□□□□ -0.9
CCDC171-209ENST00000498725 ARHGAP9Q9BRR9 750 aa9.4□□□□□ -0.9
CCDC171-209ENST00000498725 CNGB3Q9NQW8 809 aa9.4□□□□□ -0.9
CCDC171-209ENST00000498725 NAALADL1Q9UQQ1 740 aa9.4□□□□□ -0.9
CCDC171-209ENST00000498725 SYNJ2BP-COX16A0A087WUM0 186 aa9.39□□□□□ -0.91
CCDC171-209ENST00000498725 LY6G6EA0A0G2JKS1 128 aa9.39□□□□□ -0.91
CCDC171-209ENST00000498725 C1QTNF3-AMACRE9PGA6 284 aa9.39□□□□□ -0.91
CCDC171-209ENST00000498725 K7ESM1 405 aa9.39□□□□□ -0.91
CCDC171-209ENST00000498725 M0QYV0 167 aa9.39□□□□□ -0.91
CCDC171-209ENST00000498725 O00370 1275 aa9.39□□□□□ -0.91
CCDC171-209ENST00000498725 MAPK13O15264 365 aa9.39□□□□□ -0.91
CCDC171-209ENST00000498725 ACTN4O43707 911 aaKnown RBP9.39□□□□□ -0.91
CCDC171-209ENST00000498725 TNFSF15O95150 251 aa9.39□□□□□ -0.91
CCDC171-209ENST00000498725 PCDH8O95206 1070 aa9.39□□□□□ -0.91
CCDC171-209ENST00000498725 SETSIPP0DME0 302 aa9.39□□□□□ -0.91
CCDC171-209ENST00000498725 VDRP11473 427 aa9.39□□□□□ -0.91
CCDC171-209ENST00000498725 TACR2P21452 398 aa9.39□□□□□ -0.91
CCDC171-209ENST00000498725 AKT2P31751 481 aa9.39□□□□□ -0.91
CCDC171-209ENST00000498725 SRSF1Q07955 248 aaKnown RBP eCLIP9.39□□□□□ -0.91
CCDC171-209ENST00000498725 CUL2Q13617 745 aa9.39□□□□□ -0.91
CCDC171-209ENST00000498725 DEFB133Q30KQ1 61 aa9.39□□□□□ -0.91
CCDC171-209ENST00000498725 ZC3H12AQ5D1E8 599 aaKnown RBP9.39□□□□□ -0.91
CCDC171-209ENST00000498725 DCAF17Q5H9S7 520 aaPredicted RBP9.39□□□□□ -0.91
CCDC171-209ENST00000498725 FAM46CQ5VWP2 391 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms