RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 E2F8A0AVK6 867 aa16.45■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 FAM72CH0Y354 149 aa16.45■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 M0QYT0 321 aa16.45■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 PGK1P00558 417 aa16.45■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 F7P08709 466 aaPredicted RBP16.45■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 RALBP11234 206 aa16.45■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 DARSP14868 501 aaKnown RBP16.45■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 IFRD2Q12894 506 aaPredicted RBP16.45■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 DUSP28Q4G0W2 176 aa16.45■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 XKR4Q5GH76 650 aa16.45■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 FAM72AQ5TYM5 149 aa16.45■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 FAM72DQ6L9T8 149 aa16.45■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 HFE2Q6ZVN8 426 aa16.45■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 PID1Q7Z2X4 250 aa16.45■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 FAM72BQ86X60 149 aa16.45■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 NME8Q8N427 588 aa16.45■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 IFT43Q96FT9 208 aa16.45■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 ANLNQ9NQW6 1124 aa16.45■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 PIGVQ9NUD9 493 aa16.45■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 ASB3Q9Y575 518 aa16.45■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 MYADML2A6NDP7 307 aa16.44■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 KCNK1O00180 336 aa16.44■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 DYNC1LI2O43237 492 aaPredicted RBP16.44■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 USP1O94782 785 aa16.44■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 CPA3P15088 417 aa16.44■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 PTPN3P26045 913 aa16.44■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 TAF6P49848 677 aa16.44■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 AP2B1P63010 937 aa16.44■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 ITGA9Q13797 1035 aa16.44■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 PGM2L1Q6PCE3 622 aa16.44■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 APLFQ8IW19 511 aaPredicted RBP16.44■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 B3GALNT2Q8NCR0 500 aa16.44■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 AZIN2Q96A70 460 aa16.44■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 ZNF560Q96MR9 790 aa16.44■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 SLC2A13Q96QE2 648 aa16.44■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 RBBP8Q99708 897 aa16.44■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 OXCT2Q9BYC2 517 aaPredicted RBP16.44■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 I6L893 689 aaPredicted RBP16.43■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 EEF2KO00418 725 aaKnown RBP16.43■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 BUD23O43709 281 aaKnown RBP16.43■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 CCNT2O60583 730 aaKnown RBP16.43■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 USP12O75317 370 aa16.43■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 AMHP03971 560 aa16.43■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 FYNP06241 537 aa16.43■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 KCNE1P15382 129 aa16.43■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 WARSP23381 471 aaKnown RBP16.43■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 BTKQ06187 659 aa16.43■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 NME3Q13232 169 aa16.43■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 HIC1Q14526 733 aa16.43■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 ZNF467Q7Z7K2 595 aaPredicted RBP16.43■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 PHC3Q8NDX5 983 aa16.43■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 OR6J1Q8NGC5 347 aa16.43■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 PPP4R1Q8TF05 950 aa16.43■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 TMEM40Q8WWA1 233 aa16.43■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 WNT8BQ93098 351 aa16.43■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 TTC1Q99614 292 aa16.43■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 ABHD16BQ9H3Z7 469 aa16.43■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 ADAM28Q9UKQ2 775 aa16.43■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 ZCWPW2A0A1B0GU75 182 aa16.43■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 RRN3P2A6NIE6 340 aa16.43■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 ENO4A6NNW6 628 aa16.43■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 FKBP6O75344 327 aa16.43■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 SORBS2O94875 1100 aaKnown RBP16.43■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 IMPDH2P12268 514 aa16.43■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 MYL4P12829 197 aa16.43■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 CRABP2P29373 138 aa16.43■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 PNPLA4P41247 253 aa16.43■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 GARSP41250 739 aaKnown RBP16.43■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 COPAP53621 1224 aa16.43■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 DEUP1Q05D60 604 aa16.43■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 DGKDQ16760 1214 aa16.43■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 UBXN11Q5T124 520 aa16.43■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 PDPK2PQ6A1A2 396 aa16.43■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 SLC30A9Q6PML9 568 aa16.43■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 RNF111Q6ZNA4 994 aa16.43■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 TMEM135Q86UB9 458 aa16.43■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 KCTD13Q8WZ19 329 aa16.43■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 TNIP3Q96KP6 325 aa16.43■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 FERMT1Q9BQL6 677 aa16.43■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 VCXQ9H320 206 aa16.43■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 LRRC40Q9H9A6 602 aa16.43■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 S100A14Q9HCY8 104 aa16.43■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 NDE1Q9NXR1 346 aa16.43■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 TXNDC16Q9P2K2 825 aa16.43■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 G3V2L1 256 aa16.42■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 INHAP05111 366 aa16.42■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 NPR3P17342 541 aa16.42■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 ERCC2P18074 760 aa16.42■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 MX2P20592 715 aa16.42■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 LIMK2P53671 638 aa16.42■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 LILRA4P59901 499 aa16.42■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 SEMA3BQ13214 749 aa16.42■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 CCDC153Q494R4 210 aa16.42■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 KCTD11Q693B1 232 aa16.42■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 FSTL4Q6MZW2 842 aa16.42■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 AAGABQ6PD74 315 aa16.42■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 IZUMO2Q6UXV1 221 aa16.42■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 NAPRTQ6XQN6 538 aa16.42■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 ADGRG6Q86SQ4 1221 aa16.42■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 CLEC14AQ86T13 490 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms