RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 HAPLN3Q96S86 360 aa13.1□□□□□ -0.31
PTPRF-214ENST00000496043 SCNM1Q9BWG6 230 aa13.1□□□□□ -0.31
PTPRF-214ENST00000496043 ADAM33Q9BZ11 813 aa13.1□□□□□ -0.31
PTPRF-214ENST00000496043 MUC3BQ9H195 1237 aa13.1□□□□□ -0.31
PTPRF-214ENST00000496043 IL21RQ9HBE5 538 aa13.1□□□□□ -0.31
PTPRF-214ENST00000496043 NLRC4Q9NPP4 1024 aa13.1□□□□□ -0.31
PTPRF-214ENST00000496043 TM7SF3Q9NS93 570 aa13.1□□□□□ -0.31
PTPRF-214ENST00000496043 FAM207AQ9NSI2 230 aaPredicted RBP13.1□□□□□ -0.31
PTPRF-214ENST00000496043 SERGEFQ9UGK8 458 aa13.1□□□□□ -0.31
PTPRF-214ENST00000496043 TMEM59LQ9UK28 342 aa13.1□□□□□ -0.31
PTPRF-214ENST00000496043 VPS28Q9UK41 221 aa13.1□□□□□ -0.31
PTPRF-214ENST00000496043 TPX2Q9ULW0 747 aaKnown RBP13.1□□□□□ -0.31
PTPRF-214ENST00000496043 WASF3Q9UPY6 502 aa13.1□□□□□ -0.31
PTPRF-214ENST00000496043 OR51B4Q9Y5P0 310 aa13.1□□□□□ -0.31
PTPRF-214ENST00000496043 ADAMTS9Q9P2N4 1935 aa13.09□□□□□ -0.31
PTPRF-214ENST00000496043 TBC1D3DA0A087WVF3 549 aa13.09□□□□□ -0.31
PTPRF-214ENST00000496043 TBC1D3IA0A087WXS9 549 aa13.09□□□□□ -0.31
PTPRF-214ENST00000496043 TBC1D3EA0A087X179 549 aa13.09□□□□□ -0.31
PTPRF-214ENST00000496043 TBC1D3KA0A087X1G2 549 aa13.09□□□□□ -0.31
PTPRF-214ENST00000496043 A0A1W2PPC4 97 aa13.09□□□□□ -0.31
PTPRF-214ENST00000496043 FAM170AA1A519 330 aa13.09□□□□□ -0.31
PTPRF-214ENST00000496043 TBC1D3FA6NER0 549 aaPredicted RBP13.09□□□□□ -0.31
PTPRF-214ENST00000496043 LRRC10BA6NIK2 292 aa13.09□□□□□ -0.31
PTPRF-214ENST00000496043 TBC1D3LB9A6J9 549 aa13.09□□□□□ -0.31
PTPRF-214ENST00000496043 CNTN5O94779 1100 aa13.09□□□□□ -0.31
PTPRF-214ENST00000496043 TOP3BO95985 862 aaKnown RBP13.09□□□□□ -0.31
PTPRF-214ENST00000496043 CYP1A1P04798 512 aaPredicted RBP13.09□□□□□ -0.31
PTPRF-214ENST00000496043 IGHV4-34P06331 123 aa13.09□□□□□ -0.31
PTPRF-214ENST00000496043 RHOCP08134 193 aa13.09□□□□□ -0.31
PTPRF-214ENST00000496043 TBC1D3HP0C7X1 549 aa13.09□□□□□ -0.31
PTPRF-214ENST00000496043 SPINK2P20155 84 aa13.09□□□□□ -0.31
PTPRF-214ENST00000496043 FLT3P36888 993 aa13.09□□□□□ -0.31
PTPRF-214ENST00000496043 GGCXP38435 758 aa13.09□□□□□ -0.31
PTPRF-214ENST00000496043 KLK7P49862 253 aa13.09□□□□□ -0.31
PTPRF-214ENST00000496043 IRAK1P51617 712 aa13.09□□□□□ -0.31
PTPRF-214ENST00000496043 CCR5P51681 352 aa13.09□□□□□ -0.31
PTPRF-214ENST00000496043 COPB1P53618 953 aaKnown RBP13.09□□□□□ -0.31
PTPRF-214ENST00000496043 RACK1P63244 317 aaKnown RBP13.09□□□□□ -0.31
PTPRF-214ENST00000496043 MYL5Q02045 173 aa13.09□□□□□ -0.31
PTPRF-214ENST00000496043 ZNF423Q2M1K9 1284 aa13.09□□□□□ -0.31
PTPRF-214ENST00000496043 KIF19Q2TAC6 998 aa13.09□□□□□ -0.31
PTPRF-214ENST00000496043 TBC1D3GQ6DHY5 549 aa13.09□□□□□ -0.31
PTPRF-214ENST00000496043 TBC1D3CQ6IPX1 549 aa13.09□□□□□ -0.31
PTPRF-214ENST00000496043 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.09□□□□□ -0.31
PTPRF-214ENST00000496043 DBX2Q6ZNG2 339 aa13.09□□□□□ -0.31
PTPRF-214ENST00000496043 ADAT2Q7Z6V5 191 aaKnown RBP13.09□□□□□ -0.31
PTPRF-214ENST00000496043 SETD3Q86TU7 594 aaPredicted RBP13.09□□□□□ -0.31
PTPRF-214ENST00000496043 TBC1D3Q8IZP1 549 aaPredicted RBP13.09□□□□□ -0.31
PTPRF-214ENST00000496043 NEK11Q8NG66 645 aa13.09□□□□□ -0.31
PTPRF-214ENST00000496043 OR52K2Q8NGK3 314 aa13.09□□□□□ -0.31
PTPRF-214ENST00000496043 OR14C36Q8NHC7 312 aa13.09□□□□□ -0.31
PTPRF-214ENST00000496043 SETD7Q8WTS6 366 aaKnown RBP13.09□□□□□ -0.31
PTPRF-214ENST00000496043 SLC20A1Q8WUM9 679 aa13.09□□□□□ -0.31
PTPRF-214ENST00000496043 ANLNQ9NQW6 1124 aa13.09□□□□□ -0.31
PTPRF-214ENST00000496043 LIMA1Q9UHB6 759 aaKnown RBP13.09□□□□□ -0.31
PTPRF-214ENST00000496043 NOCTQ9UK39 431 aaKnown RBP13.09□□□□□ -0.31
PTPRF-214ENST00000496043 FARP1Q9Y4F1 1045 aaPredicted RBP13.09□□□□□ -0.31
PTPRF-214ENST00000496043 PCDHGB2Q9Y5G2 931 aa13.09□□□□□ -0.31
PTPRF-214ENST00000496043 SNX11Q9Y5W9 270 aa13.09□□□□□ -0.31
PTPRF-214ENST00000496043 SNX10Q9Y5X0 201 aa13.09□□□□□ -0.31
PTPRF-214ENST00000496043 SLCO1B1Q9Y6L6 691 aa13.09□□□□□ -0.31
PTPRF-214ENST00000496043 PCDH15Q96QU1 1955 aa13.09□□□□□ -0.31
PTPRF-214ENST00000496043 ACACBO00763 2458 aa13.08□□□□□ -0.31
PTPRF-214ENST00000496043 E9PAM4 449 aa13.08□□□□□ -0.32
PTPRF-214ENST00000496043 MCF2LO15068 1137 aa13.08□□□□□ -0.32
PTPRF-214ENST00000496043 DFNA5O60443 496 aa13.08□□□□□ -0.32
PTPRF-214ENST00000496043 SRGAP2O75044 1071 aa13.08□□□□□ -0.32
PTPRF-214ENST00000496043 ENDOD1O94919 500 aa13.08□□□□□ -0.32
PTPRF-214ENST00000496043 PROS1P07225 676 aa13.08□□□□□ -0.32
PTPRF-214ENST00000496043 VAV1P15498 845 aa13.08□□□□□ -0.32
PTPRF-214ENST00000496043 CHRNB2P17787 502 aa13.08□□□□□ -0.32
PTPRF-214ENST00000496043 C21orf59P57076 290 aa13.08□□□□□ -0.32
PTPRF-214ENST00000496043 JAM2P57087 298 aa13.08□□□□□ -0.32
PTPRF-214ENST00000496043 FMO1Q01740 532 aa13.08□□□□□ -0.32
PTPRF-214ENST00000496043 SYCP1Q15431 976 aa13.08□□□□□ -0.32
PTPRF-214ENST00000496043 STX1AQ16623 288 aa13.08□□□□□ -0.32
PTPRF-214ENST00000496043 ALFQ53S48 1182 aa13.08□□□□□ -0.32
PTPRF-214ENST00000496043 C6orf118Q5T5N4 469 aa13.08□□□□□ -0.32
PTPRF-214ENST00000496043 TRIM72Q6ZMU5 477 aa13.08□□□□□ -0.32
PTPRF-214ENST00000496043 ZNF683Q8IZ20 524 aa13.08□□□□□ -0.32
PTPRF-214ENST00000496043 SH2D3CQ8N5H7 860 aa13.08□□□□□ -0.32
PTPRF-214ENST00000496043 AADATQ8N5Z0 425 aa13.08□□□□□ -0.32
PTPRF-214ENST00000496043 RHBDD1Q8TEB9 315 aa13.08□□□□□ -0.32
PTPRF-214ENST00000496043 CFAP57Q96MR6 1250 aa13.08□□□□□ -0.32
PTPRF-214ENST00000496043 ORAI3Q9BRQ5 295 aa13.08□□□□□ -0.32
PTPRF-214ENST00000496043 C2orf49Q9BVC5 232 aaPredicted RBP13.08□□□□□ -0.32
PTPRF-214ENST00000496043 ACE2Q9BYF1 805 aaPredicted RBP13.08□□□□□ -0.32
PTPRF-214ENST00000496043 KDM4CQ9H3R0 1056 aa13.08□□□□□ -0.32
PTPRF-214ENST00000496043 PCOLCE2Q9UKZ9 415 aa13.08□□□□□ -0.32
PTPRF-214ENST00000496043 PPM1HQ9ULR3 514 aa13.08□□□□□ -0.32
PTPRF-214ENST00000496043 FNDC3AQ9Y2H6 1198 aaKnown RBP13.08□□□□□ -0.32
PTPRF-214ENST00000496043 SIK3Q9Y2K2 1263 aa13.08□□□□□ -0.32
PTPRF-214ENST00000496043 IGLV3-10A0A075B6K4 115 aa13.07□□□□□ -0.32
PTPRF-214ENST00000496043 C1QTNF3-AMACRE9PGA6 284 aa13.07□□□□□ -0.32
PTPRF-214ENST00000496043 I6L893 689 aaPredicted RBP13.07□□□□□ -0.32
PTPRF-214ENST00000496043 KCNK3O14649 394 aa13.07□□□□□ -0.32
PTPRF-214ENST00000496043 VILLO15195 856 aa13.07□□□□□ -0.32
PTPRF-214ENST00000496043 ALOX15BO15296 676 aa13.07□□□□□ -0.32
PTPRF-214ENST00000496043 HYAL3O43820 417 aaPredicted RBP13.07□□□□□ -0.32
PTPRF-214ENST00000496043 CBFA2T3O75081 653 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms