RNA–Protein interactions for RNA: ENST00000493919.5

BRCA1-222, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 2

Gene BRCA1, Length 1,948 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-222ENST00000493919 MRPL39Q9NYK5 338 aaKnown RBP11.88□□□□□ -0.51
BRCA1-222ENST00000493919 ZNHIT2Q9UHR6 403 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 SLC8A2Q9UPR5 921 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 SPEF1Q9Y4P9 236 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 C5orf42Q9H799 3197 aa11.87□□□□□ -0.51
BRCA1-222ENST00000493919 GOLGA8QA0A0J9YX86 632 aa11.87□□□□□ -0.51
BRCA1-222ENST00000493919 SMIM31A0A1B0GVY4 71 aa11.87□□□□□ -0.51
BRCA1-222ENST00000493919 GOLGA8OA6NCC3 632 aa11.87□□□□□ -0.51
BRCA1-222ENST00000493919 C5orf60A6NFR6 353 aa11.87□□□□□ -0.51
BRCA1-222ENST00000493919 GOLGA8NF8WBI6 632 aa11.87□□□□□ -0.51
BRCA1-222ENST00000493919 STX16-NPEPL1H3BU86 382 aa11.87□□□□□ -0.51
BRCA1-222ENST00000493919 TOR1BO14657 336 aa11.87□□□□□ -0.51
BRCA1-222ENST00000493919 PER2O15055 1255 aa11.87□□□□□ -0.51
BRCA1-222ENST00000493919 DNAJC6O75061 913 aa11.87□□□□□ -0.51
BRCA1-222ENST00000493919 CXCL14O95715 111 aa11.87□□□□□ -0.51
BRCA1-222ENST00000493919 SNRPAP09012 282 aaKnown RBP11.87□□□□□ -0.51
BRCA1-222ENST00000493919 TRIM49P0CI25 452 aa11.87□□□□□ -0.51
BRCA1-222ENST00000493919 TRIM49CP0CI26 452 aa11.87□□□□□ -0.51
BRCA1-222ENST00000493919 PABPC1P11940 636 aaKnown RBP11.87□□□□□ -0.51
BRCA1-222ENST00000493919 COL6A2P12110 1019 aa11.87□□□□□ -0.51
BRCA1-222ENST00000493919 NRIP1P48552 1158 aa11.87□□□□□ -0.51
BRCA1-222ENST00000493919 PTDSS1P48651 473 aaKnown RBP11.87□□□□□ -0.51
BRCA1-222ENST00000493919 CACNA2D1P54289 1103 aa11.87□□□□□ -0.51
BRCA1-222ENST00000493919 EMP3P54852 163 aa11.87□□□□□ -0.51
BRCA1-222ENST00000493919 DLG4P78352 724 aa11.87□□□□□ -0.51
BRCA1-222ENST00000493919 DUOXA2Q1HG44 320 aa11.87□□□□□ -0.51
BRCA1-222ENST00000493919 DCAF17Q5H9S7 520 aaPredicted RBP11.87□□□□□ -0.51
BRCA1-222ENST00000493919 RTP2Q5QGT7 225 aa11.87□□□□□ -0.51
BRCA1-222ENST00000493919 RHOUQ7L0Q8 258 aa11.87□□□□□ -0.51
BRCA1-222ENST00000493919 ZER1Q7Z7L7 766 aa11.87□□□□□ -0.51
BRCA1-222ENST00000493919 USP37Q86T82 979 aa11.87□□□□□ -0.51
BRCA1-222ENST00000493919 GLYCTKQ8IVS8 523 aa11.87□□□□□ -0.51
BRCA1-222ENST00000493919 TBC1D21Q8IYX1 336 aa11.87□□□□□ -0.51
BRCA1-222ENST00000493919 ELMOD1Q8N336 334 aa11.87□□□□□ -0.51
BRCA1-222ENST00000493919 CSGALNACT2Q8N6G5 542 aa11.87□□□□□ -0.51
BRCA1-222ENST00000493919 MLKLQ8NB16 471 aa11.87□□□□□ -0.51
BRCA1-222ENST00000493919 GOT1L1Q8NHS2 421 aaPredicted RBP11.87□□□□□ -0.51
BRCA1-222ENST00000493919 CCT6BQ92526 530 aa11.87□□□□□ -0.51
BRCA1-222ENST00000493919 SLC9A6Q92581 669 aa11.87□□□□□ -0.51
BRCA1-222ENST00000493919 REXO5Q96IC2 774 aaKnown RBP11.87□□□□□ -0.51
BRCA1-222ENST00000493919 ZNF560Q96MR9 790 aa11.87□□□□□ -0.51
BRCA1-222ENST00000493919 DACH1Q9UI36 760 aa11.87□□□□□ -0.51
BRCA1-222ENST00000493919 FBXO10Q9UK96 956 aa11.87□□□□□ -0.51
BRCA1-222ENST00000493919 ITGA11Q9UKX5 1188 aa11.87□□□□□ -0.51
BRCA1-222ENST00000493919 MAPRE3Q9UPY8 281 aa11.87□□□□□ -0.51
BRCA1-222ENST00000493919 PCDHGA11Q9Y5H2 935 aa11.87□□□□□ -0.51
BRCA1-222ENST00000493919 VWA8A3KMH1 1905 aa11.87□□□□□ -0.51
BRCA1-222ENST00000493919 FSCN2O14926 492 aa11.86□□□□□ -0.51
BRCA1-222ENST00000493919 MAPK13O15264 365 aa11.86□□□□□ -0.51
BRCA1-222ENST00000493919 GNAZP19086 355 aa11.86□□□□□ -0.51
BRCA1-222ENST00000493919 POU3F3P20264 500 aaPredicted RBP11.86□□□□□ -0.51
BRCA1-222ENST00000493919 TARSP26639 723 aaKnown RBP11.86□□□□□ -0.51
BRCA1-222ENST00000493919 PBLDP30039 288 aaPredicted RBP11.86□□□□□ -0.51
BRCA1-222ENST00000493919 GGCXP38435 758 aa11.86□□□□□ -0.51
BRCA1-222ENST00000493919 TAF6P49848 677 aa11.86□□□□□ -0.51
BRCA1-222ENST00000493919 MYL6P60660 151 aa11.86□□□□□ -0.51
BRCA1-222ENST00000493919 VSNL1P62760 191 aa11.86□□□□□ -0.51
BRCA1-222ENST00000493919 APBA1Q02410 837 aa11.86□□□□□ -0.51
BRCA1-222ENST00000493919 BFSP1Q12934 665 aa11.86□□□□□ -0.51
BRCA1-222ENST00000493919 CNGA2Q16280 664 aa11.86□□□□□ -0.51
BRCA1-222ENST00000493919 TTI2Q6NXR4 508 aa11.86□□□□□ -0.51
BRCA1-222ENST00000493919 POMZP3Q6PJE2 187 aa11.86□□□□□ -0.51
BRCA1-222ENST00000493919 PRSS55Q6UWB4 352 aaPredicted RBP11.86□□□□□ -0.51
BRCA1-222ENST00000493919 CD300LGQ6UXG3 332 aa11.86□□□□□ -0.51
BRCA1-222ENST00000493919 IDO2Q6ZQW0 420 aa11.86□□□□□ -0.51
BRCA1-222ENST00000493919 RBM43Q6ZSC3 357 aaKnown RBP11.86□□□□□ -0.51
BRCA1-222ENST00000493919 TMEM174Q8WUU8 243 aa11.86□□□□□ -0.51
BRCA1-222ENST00000493919 STON2Q8WXE9 905 aa11.86□□□□□ -0.51
BRCA1-222ENST00000493919 CCDC106Q9BWC9 280 aa11.86□□□□□ -0.51
BRCA1-222ENST00000493919 IMPG2Q9BZV3 1241 aa11.86□□□□□ -0.51
BRCA1-222ENST00000493919 PITHD1Q9GZP4 211 aaPredicted RBP11.86□□□□□ -0.51
BRCA1-222ENST00000493919 TLE6Q9H808 572 aa11.86□□□□□ -0.51
BRCA1-222ENST00000493919 AMACRQ9UHK6 382 aa11.86□□□□□ -0.51
BRCA1-222ENST00000493919 DPP7Q9UHL4 492 aa11.86□□□□□ -0.51
BRCA1-222ENST00000493919 SCN1AP35498 2009 aa11.86□□□□□ -0.51
BRCA1-222ENST00000493919 SH3PXD2BA1X283 911 aa11.86□□□□□ -0.51
BRCA1-222ENST00000493919 C2orf71A6NGG8 1288 aa11.86□□□□□ -0.51
BRCA1-222ENST00000493919 PIRO00625 290 aa11.86□□□□□ -0.51
BRCA1-222ENST00000493919 ADAM23O75077 832 aa11.86□□□□□ -0.51
BRCA1-222ENST00000493919 VAV1P15498 845 aa11.86□□□□□ -0.51
BRCA1-222ENST00000493919 CCNFP41002 786 aa11.86□□□□□ -0.51
BRCA1-222ENST00000493919 CD86P42081 329 aa11.86□□□□□ -0.51
BRCA1-222ENST00000493919 STT3AP46977 705 aa11.86□□□□□ -0.51
BRCA1-222ENST00000493919 VAMP7P51809 220 aa11.86□□□□□ -0.51
BRCA1-222ENST00000493919 DSG1Q02413 1049 aa11.86□□□□□ -0.51
BRCA1-222ENST00000493919 PDE1CQ14123 709 aaPredicted RBP11.86□□□□□ -0.51
BRCA1-222ENST00000493919 PSMD5Q16401 504 aa11.86□□□□□ -0.51
BRCA1-222ENST00000493919 SV2CQ496J9 727 aa11.86□□□□□ -0.51
BRCA1-222ENST00000493919 LIN52Q52LA3 116 aa11.86□□□□□ -0.51
BRCA1-222ENST00000493919 PDE12Q6L8Q7 609 aaKnown RBP11.86□□□□□ -0.51
BRCA1-222ENST00000493919 LRRC8BQ6P9F7 803 aa11.86□□□□□ -0.51
BRCA1-222ENST00000493919 TRIM67Q6ZTA4 783 aa11.86□□□□□ -0.51
BRCA1-222ENST00000493919 BEND4Q6ZU67 534 aa11.86□□□□□ -0.51
BRCA1-222ENST00000493919 TRAPPC11Q7Z392 1133 aa11.86□□□□□ -0.51
BRCA1-222ENST00000493919 CYP2U1Q7Z449 544 aa11.86□□□□□ -0.51
BRCA1-222ENST00000493919 ZNF677Q86XU0 584 aa11.86□□□□□ -0.51
BRCA1-222ENST00000493919 CACNA2D3Q8IZS8 1091 aa11.86□□□□□ -0.51
BRCA1-222ENST00000493919 MRPL43Q8N983 215 aaKnown RBP11.86□□□□□ -0.51
BRCA1-222ENST00000493919 KCT2Q8NC54 265 aa11.86□□□□□ -0.51
BRCA1-222ENST00000493919 GALNT11Q8NCW6 608 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms