RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 CRYBB1P53674 252 aaPredicted RBP10.97□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 C21orf59P57076 290 aa10.97□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 MRPS15P82914 257 aaKnown RBP10.97□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 DPYSL3Q14195 570 aa10.97□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 FSCBQ5H9T9 825 aa10.97□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 HABP4Q5JVS0 413 aaKnown RBP10.97□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 RIPOR1Q6ZS17 1223 aa10.97□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 SAPCD2Q86UD0 394 aa10.97□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 RMDN1Q96DB5 314 aa10.97□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 PCYOX1Q9UHG3 505 aa10.97□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 CHKBQ9Y259 395 aa10.97□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 UBA6A0AVT1 1052 aaPredicted RBP10.97□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 YJEFN3A6XGL0 299 aa10.97□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 A8MX80 341 aa10.97□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 PRRG1O14668 218 aa10.97□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 BEST1O76090 585 aa10.97□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 MT-CO1P00395 513 aa10.97□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 PSMC3P17980 439 aa10.97□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 MGAT1P26572 445 aa10.97□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 WEE1P30291 646 aa10.97□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 CDKN2BP42772 138 aa10.97□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ACSBG2Q5FVE4 666 aa10.97□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ZDHHC24Q6UX98 284 aa10.97□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 GPR141Q7Z602 305 aa10.97□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 SIX5Q8N196 739 aa10.97□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ARRDC4Q8NCT1 418 aa10.97□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 PCED1BQ96HM7 432 aa10.97□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 EXOC2Q96KP1 924 aa10.97□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 LRRC19Q9H756 370 aa10.97□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 TLK1Q9UKI8 766 aa10.97□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ARHGAP26Q9UNA1 814 aa10.97□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 COL24A1Q17RW2 1714 aa10.97□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 DNAJC25-GNG10A0A024R161 153 aa10.97□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 RNF103O00237 685 aa10.97□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ASMTLO95671 621 aa10.97□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 PSMB4P28070 264 aa10.97□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 PTGIRP43119 386 aa10.97□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ALDH7A1P49419 539 aaKnown RBP10.97□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 GATMP50440 423 aa10.97□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ANO4Q32M45 955 aa10.97□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 CYP4X1Q8N118 509 aa10.97□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ATPAF2Q8N5M1 289 aa10.97□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 FBXO32Q969P5 355 aa10.97□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 EMID1Q96A84 441 aaPredicted RBP10.97□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 PLGRKTQ9HBL7 147 aa10.97□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 C20orf96Q9NUD7 363 aaPredicted RBP10.97□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 PAK5Q9P286 719 aa10.97□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 TAGLN3Q9UI15 199 aa10.97□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 HBS1LQ9Y450 684 aaKnown RBP10.97□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 LY75O60449 1722 aa10.96□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 MCM3APO60318 1980 aa10.96□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 SLC12A8A0AV02 714 aa10.96□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 TBX18O95935 607 aa10.96□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ADRA1DP25100 572 aa10.96□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 HMOX2P30519 316 aa10.96□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 HOXA11P31270 313 aaPredicted RBP10.96□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 COPAP53621 1224 aa10.96□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 FAAP100Q0VG06 881 aa10.96□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 CLNKQ7Z7G1 428 aa10.96□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 UNC5BQ8IZJ1 945 aa10.96□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ANKRD52Q8NB46 1076 aa10.96□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 RNF157Q96PX1 679 aa10.96□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 HMX1Q9NP08 348 aaPredicted RBP10.96□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ARL8BQ9NVJ2 186 aa10.96□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 SPATA7Q9P0W8 599 aa10.96□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 AK5Q9Y6K8 562 aa10.96□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 SMIM35A0A1B0GVV1 85 aa10.96□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 LTFP02788 710 aa10.96□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ERVK-10P10266 1014 aa10.96□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 DRG2P55039 364 aaKnown RBP10.96□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 CLVS1Q8IUQ0 354 aaPredicted RBP10.96□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 SPATA6LQ8N4H0 392 aa10.96□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 TTC39CQ8N584 583 aa10.96□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 CYLDQ9NQC7 956 aa10.96□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 FBXO6Q9NRD1 293 aaPredicted RBP10.96□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 PTTG2Q9NZH5 202 aa10.96□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ADA2Q9NZK5 511 aa10.96□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 OR12D3Q9UGF7 316 aa10.96□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 SLC39A10Q9ULF5 831 aa10.96□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 IGKV6D-21A0A0A0MT36 114 aa10.96□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 APOC4-APOC2K7ER74 178 aa10.96□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 AIM2O14862 343 aa10.96□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 COQ9O75208 318 aa10.96□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 KRT38O76015 456 aa10.96□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 APOC2P02655 101 aa10.96□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 STMN1P16949 149 aa10.96□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 RPA3P35244 121 aaPredicted RBP10.96□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 CXCR3P49682 368 aa10.96□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 CSE1LP55060 971 aaKnown RBP10.96□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 PDAP1Q13442 181 aaKnown RBP10.96□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 LPIN1Q14693 890 aa10.96□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 TIGD5Q53EQ6 642 aa10.96□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 FNBP1LQ5T0N5 605 aa10.96□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 DPY19L2P1Q6NXN4 242 aa10.96□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 NCCRP1Q6ZVX7 275 aaPredicted RBP10.96□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 TP53INP2Q8IXH6 220 aa10.96□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 PCSK9Q8NBP7 692 aaKnown RBP10.96□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 OXNAD1Q96HP4 312 aaPredicted RBP10.96□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 SNX27Q96L92 541 aa10.96□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 PCDH18Q9HCL0 1135 aa10.96□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 140.8 ms