RNA–Protein interactions for RNA: ENST00000488765.1

MCF2L-229, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 2

Gene MCF2L, Length 3,205 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-229ENST00000488765 PCLAFQ15004 111 aa16.51■□□□□ 0.23
MCF2L-229ENST00000488765 PTPN20Q4JDL3 420 aa16.51■□□□□ 0.23
MCF2L-229ENST00000488765 FAM47CQ5HY64 1035 aa16.51■□□□□ 0.23
MCF2L-229ENST00000488765 STRIP1Q5VSL9 837 aa16.51■□□□□ 0.23
MCF2L-229ENST00000488765 CHSY3Q70JA7 882 aa16.51■□□□□ 0.23
MCF2L-229ENST00000488765 SREK1IP1Q8N9Q2 155 aaPredicted RBP16.51■□□□□ 0.23
MCF2L-229ENST00000488765 NKD2Q969F2 451 aaPredicted RBP16.51■□□□□ 0.23
MCF2L-229ENST00000488765 ZDHHC15Q96MV8 337 aa16.51■□□□□ 0.23
MCF2L-229ENST00000488765 DGCR6LQ9BY27 220 aa16.51■□□□□ 0.23
MCF2L-229ENST00000488765 RABL2AQ9UBK7 228 aaPredicted RBP16.51■□□□□ 0.23
MCF2L-229ENST00000488765 C10orf71Q711Q0 1435 aa16.51■□□□□ 0.23
MCF2L-229ENST00000488765 CCNA2P20248 432 aa16.5■□□□□ 0.23
MCF2L-229ENST00000488765 HSPA13P48723 471 aa16.5■□□□□ 0.23
MCF2L-229ENST00000488765 NOMO3P69849 1222 aa16.5■□□□□ 0.23
MCF2L-229ENST00000488765 TNK2Q07912 1038 aa16.5■□□□□ 0.23
MCF2L-229ENST00000488765 ORC1Q13415 861 aa16.5■□□□□ 0.23
MCF2L-229ENST00000488765 PRR23CQ6ZRP0 262 aa16.5■□□□□ 0.23
MCF2L-229ENST00000488765 DPH6Q7L8W6 267 aa16.5■□□□□ 0.23
MCF2L-229ENST00000488765 TTC30AQ86WT1 665 aa16.5■□□□□ 0.23
MCF2L-229ENST00000488765 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP16.5■□□□□ 0.23
MCF2L-229ENST00000488765 ACCSQ96QU6 501 aa16.5■□□□□ 0.23
MCF2L-229ENST00000488765 SMARCAD1Q9H4L7 1026 aa16.5■□□□□ 0.23
MCF2L-229ENST00000488765 DHX35Q9H5Z1 703 aaKnown RBP16.5■□□□□ 0.23
MCF2L-229ENST00000488765 PARVAQ9NVD7 372 aa16.5■□□□□ 0.23
MCF2L-229ENST00000488765 ERVK-11Q9UQG0 969 aa16.5■□□□□ 0.23
MCF2L-229ENST00000488765 CARD8Q9Y2G2 431 aa16.5■□□□□ 0.23
MCF2L-229ENST00000488765 SQORQ9Y6N5 450 aa16.5■□□□□ 0.23
MCF2L-229ENST00000488765 KPNA4O00629 521 aaPredicted RBP16.5■□□□□ 0.23
MCF2L-229ENST00000488765 ZNF195O14628 629 aa16.5■□□□□ 0.23
MCF2L-229ENST00000488765 XYLBO75191 536 aa16.5■□□□□ 0.23
MCF2L-229ENST00000488765 VAPBO95292 243 aa16.5■□□□□ 0.23
MCF2L-229ENST00000488765 CYP3A7P24462 503 aa16.5■□□□□ 0.23
MCF2L-229ENST00000488765 ABCE1P61221 599 aaKnown RBP16.5■□□□□ 0.23
MCF2L-229ENST00000488765 ZIK1Q3SY52 487 aaPredicted RBP16.5■□□□□ 0.23
MCF2L-229ENST00000488765 PLA2G4FQ68DD2 849 aa16.5■□□□□ 0.23
MCF2L-229ENST00000488765 RWDD4Q6NW29 188 aaKnown RBP16.5■□□□□ 0.23
MCF2L-229ENST00000488765 FANCEQ9HB96 536 aa16.5■□□□□ 0.23
MCF2L-229ENST00000488765 AVENQ9NQS1 362 aaPredicted RBP16.5■□□□□ 0.23
MCF2L-229ENST00000488765 DUS2Q9NX74 493 aaKnown RBP16.5■□□□□ 0.23
MCF2L-229ENST00000488765 IP6K2Q9UHH9 426 aa16.5■□□□□ 0.23
MCF2L-229ENST00000488765 SORCS3Q9UPU3 1222 aa16.5■□□□□ 0.23
MCF2L-229ENST00000488765 TRAF6Q9Y4K3 522 aa16.5■□□□□ 0.23
MCF2L-229ENST00000488765 KCNU1A8MYU2 1149 aa16.49■□□□□ 0.23
MCF2L-229ENST00000488765 E7ESA3 106 aa16.49■□□□□ 0.23
MCF2L-229ENST00000488765 PSMA2P25787 234 aa16.49■□□□□ 0.23
MCF2L-229ENST00000488765 CRHR1P34998 444 aa16.49■□□□□ 0.23
MCF2L-229ENST00000488765 ACOT2P49753 483 aa16.49■□□□□ 0.23
MCF2L-229ENST00000488765 SEPHS1P49903 392 aa16.49■□□□□ 0.23
MCF2L-229ENST00000488765 TXNL4AP83876 142 aaKnown RBP16.49■□□□□ 0.23
MCF2L-229ENST00000488765 SP4Q02446 784 aa16.49■□□□□ 0.23
MCF2L-229ENST00000488765 STILQ15468 1287 aa16.49■□□□□ 0.23
MCF2L-229ENST00000488765 DLG2Q15700 870 aa16.49■□□□□ 0.23
MCF2L-229ENST00000488765 LSM12Q3MHD2 195 aaKnown RBP16.49■□□□□ 0.23
MCF2L-229ENST00000488765 FSCBQ5H9T9 825 aa16.49■□□□□ 0.23
MCF2L-229ENST00000488765 GK5Q6ZS86 529 aa16.49■□□□□ 0.23
MCF2L-229ENST00000488765 EEPD1Q7L9B9 569 aa16.49■□□□□ 0.23
MCF2L-229ENST00000488765 ELMO1Q92556 727 aa16.49■□□□□ 0.23
MCF2L-229ENST00000488765 LPGAT1Q92604 370 aa16.49■□□□□ 0.23
MCF2L-229ENST00000488765 AGO2Q9UKV8 859 aaKnown RBP16.49■□□□□ 0.23
MCF2L-229ENST00000488765 SCN7AQ01118 1682 aa16.49■□□□□ 0.23
MCF2L-229ENST00000488765 TAF4O00268 1085 aa16.49■□□□□ 0.23
MCF2L-229ENST00000488765 SPAG6O75602 509 aa16.49■□□□□ 0.23
MCF2L-229ENST00000488765 CHRNB1P11230 501 aa16.49■□□□□ 0.23
MCF2L-229ENST00000488765 WNT7BP56706 349 aa16.49■□□□□ 0.23
MCF2L-229ENST00000488765 LRRC8EQ6NSJ5 796 aa16.49■□□□□ 0.23
MCF2L-229ENST00000488765 HMBOX1Q6NT76 420 aa16.49■□□□□ 0.23
MCF2L-229ENST00000488765 ZNF597Q96LX8 424 aa16.49■□□□□ 0.23
MCF2L-229ENST00000488765 AMNQ9BXJ7 453 aa16.49■□□□□ 0.23
MCF2L-229ENST00000488765 GNPTGQ9UJJ9 305 aa16.49■□□□□ 0.23
MCF2L-229ENST00000488765 hCG_1984214I3L0E3 225 aa16.49■□□□□ 0.23
MCF2L-229ENST00000488765 ALDOAP04075 364 aaKnown RBP16.49■□□□□ 0.23
MCF2L-229ENST00000488765 COPZ1P61923 177 aa16.49■□□□□ 0.23
MCF2L-229ENST00000488765 CDO1Q16878 200 aa16.49■□□□□ 0.23
MCF2L-229ENST00000488765 CCDC58Q4VC31 144 aa16.49■□□□□ 0.23
MCF2L-229ENST00000488765 ZFP1Q6P2D0 407 aa16.49■□□□□ 0.23
MCF2L-229ENST00000488765 C16orf89Q6UX73 402 aa16.49■□□□□ 0.23
MCF2L-229ENST00000488765 KIAA0319LQ8IZA0 1049 aa16.49■□□□□ 0.23
MCF2L-229ENST00000488765 NACC1Q96RE7 527 aa16.49■□□□□ 0.23
MCF2L-229ENST00000488765 CAB39LQ9H9S4 337 aa16.49■□□□□ 0.23
MCF2L-229ENST00000488765 HACD3Q9P035 362 aa16.49■□□□□ 0.23
MCF2L-229ENST00000488765 KLRG2A4D1S0 409 aaPredicted RBP16.48■□□□□ 0.23
MCF2L-229ENST00000488765 TMEM114B3SHH9 223 aa16.48■□□□□ 0.23
MCF2L-229ENST00000488765 E7ENX8 843 aa16.48■□□□□ 0.23
MCF2L-229ENST00000488765 CCRL2O00421 344 aa16.48■□□□□ 0.23
MCF2L-229ENST00000488765 SERPINE1P05121 402 aa16.48■□□□□ 0.23
MCF2L-229ENST00000488765 RACK1P63244 317 aaKnown RBP16.48■□□□□ 0.23
MCF2L-229ENST00000488765 PRKCQQ04759 706 aa16.48■□□□□ 0.23
MCF2L-229ENST00000488765 PLD6Q8N2A8 252 aaKnown RBP16.48■□□□□ 0.23
MCF2L-229ENST00000488765 TDRD5Q8NAT2 981 aaKnown RBP16.48■□□□□ 0.23
MCF2L-229ENST00000488765 CANT1Q8WVQ1 401 aa16.48■□□□□ 0.23
MCF2L-229ENST00000488765 CCDC17Q96LX7 622 aa16.48■□□□□ 0.23
MCF2L-229ENST00000488765 FAM20AQ96MK3 541 aa16.48■□□□□ 0.23
MCF2L-229ENST00000488765 CGREF1Q99674 301 aa16.48■□□□□ 0.23
MCF2L-229ENST00000488765 CCDC68Q9H2F9 335 aa16.48■□□□□ 0.23
MCF2L-229ENST00000488765 CNGB3Q9NQW8 809 aa16.48■□□□□ 0.23
MCF2L-229ENST00000488765 DKK3Q9UBP4 350 aa16.48■□□□□ 0.23
MCF2L-229ENST00000488765 KLHL3Q9UH77 587 aa16.48■□□□□ 0.23
MCF2L-229ENST00000488765 GJA3Q9Y6H8 435 aa16.48■□□□□ 0.23
MCF2L-229ENST00000488765 SMCHD1A6NHR9 2005 aa16.48■□□□□ 0.23
MCF2L-229ENST00000488765 CCDC78A2IDD5 438 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms